View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF4091_high_5 (Length: 504)
Name: NF4091_high_5
Description: NF4091
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF4091_high_5 |
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Alignment Details
Target: chr1 (Bit Score: 402; Significance: 0; HSPs: 3)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 402; E-Value: 0
Query Start/End: Original strand, 18 - 491
Target Start/End: Complemental strand, 2527480 - 2527005
Alignment:
| Q |
18 |
taaataagtttctagacgtagcaaatttaaatataacatttaaaattgaagttttcgtatgtagaaaatctaaatatcaatttttgtatgtgaaaaattc |
117 |
Q |
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||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||| |
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| T |
2527480 |
taaataagtttctagacgtagcaaatttaaatataacatttaaaattgaagttttcgtacgtagaaaatctaaatatcaatttttgtatgtgaaaaattc |
2527381 |
T |
|
| Q |
118 |
aaacatgacnnnnnnnn----ctacaacagtttttgaacctaattaaaatccaaatatagcgtcttaaaatagaagtttttcggatgcagaaattcaaat |
213 |
Q |
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| T |
2527380 |
aaacatgacaaaaaaaaaaaactacaacagtttttgaacctaattaaaatccaaatatagcgtcttaaaatagaagtttttcggatgcagaaattcaaat |
2527281 |
T |
|
| Q |
214 |
ttaaaatttcttatttccaatatagagtcttaaatatagcatatgtagttttacaaccattatatataatagccatcgttttgaaaggatgctacgcttg |
313 |
Q |
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|||||||||| |||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||| |
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| T |
2527280 |
ttaaaatttcgtatttccaatatagcgtcttaaatatagcatatgtagttttacaaccattatatataatagccatcgttttgaaaggaagctacgcttg |
2527181 |
T |
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| Q |
314 |
aaatcctcctggctgaaacttttctagaacggtcaccttcttcactttgattctgcattcaagaaaactgccaaccaccactcgatctcccccacttcca |
413 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
2527180 |
aaatcctcctggctgaaacttttctagaacggtcaccttcttcactttgattctgcattcaagaaaactgccaaccaccactcgatctcccccacttcca |
2527081 |
T |
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| Q |
414 |
ctttgtgtgcagttaccacctctcaaaattcttgacatcttcccactagcgctaagcttccaacgatgctcacaggtt |
491 |
Q |
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| T |
2527080 |
ctttgtgtgcagttaccac--ctcaaaattattgacatcttcccactagcgctaagcttccaacgatgctcaccggtt |
2527005 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #2
Raw Score: 44; E-Value: 8e-16
Query Start/End: Original strand, 159 - 218
Target Start/End: Complemental strand, 2577573 - 2577515
Alignment:
| Q |
159 |
aaaatccaaatatagcgtcttaaaatagaagtttttcggatgcagaaattcaaatttaaa |
218 |
Q |
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|||||||||||| |||||||||||||||||| ||||| |||||||||||||||||||||| |
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| T |
2577573 |
aaaatccaaatacagcgtcttaaaatagaag-ttttcagatgcagaaattcaaatttaaa |
2577515 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #3
Raw Score: 33; E-Value: 0.000000003
Query Start/End: Original strand, 79 - 123
Target Start/End: Complemental strand, 2577645 - 2577601
Alignment:
| Q |
79 |
tagaaaatctaaatatcaatttttgtatgtgaaaaattcaaacat |
123 |
Q |
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| T |
2577645 |
tagaaaatctatatatcaatatttgtatgtgaaaagttcaaacat |
2577601 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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