View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF4091_high_52 (Length: 208)
Name: NF4091_high_52
Description: NF4091
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF4091_high_52 |
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| [»] chr3 (3 HSPs) |
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Alignment Details
Target: chr3 (Bit Score: 140; Significance: 2e-73; HSPs: 3)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 140; E-Value: 2e-73
Query Start/End: Original strand, 61 - 208
Target Start/End: Original strand, 20385861 - 20386008
Alignment:
| Q |
61 |
tacatggtctcattcagttaaagcccaaaaacaaatgtcaagccctaaccctaaacaagcctataaatctcatccccgaaactataatttccttcactgg |
160 |
Q |
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| T |
20385861 |
tacatggtctcattcagttaaagcccaaaaacaaatgtcaagccctaaccctaaacaagcctataaatctcatacccgaaactataatttccttcactgg |
20385960 |
T |
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| Q |
161 |
tagcgccgtagttctacattgcagtgctatctcgtgtcttgatgttcc |
208 |
Q |
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| T |
20385961 |
tagcgccgtagttctacattgcagtgctatctcatgtcttgatgttcc |
20386008 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #2
Raw Score: 34; E-Value: 0.0000000003
Query Start/End: Original strand, 80 - 142
Target Start/End: Complemental strand, 34874111 - 34874047
Alignment:
| Q |
80 |
aaagcccaaaaacaaatgtcaagccctaaccctaaacaagcc--tataaatctcatccccgaaac |
142 |
Q |
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| T |
34874111 |
aaagcccaaaaacaaatgtgacaacctaaccctaaataagcctatataaatctcatccccgaaac |
34874047 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #3
Raw Score: 30; E-Value: 0.00000007
Query Start/End: Original strand, 17 - 46
Target Start/End: Original strand, 20385832 - 20385861
Alignment:
| Q |
17 |
cactactgcgtgtgcatttagaaagcaact |
46 |
Q |
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| T |
20385832 |
cactactgcgtgtgcatttagaaagcaact |
20385861 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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