View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF4091_low_1 (Length: 731)

Name: NF4091_low_1
Description: NF4091
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF4091_low_1
NF4091_low_1
[»] chr5 (1 HSPs)
chr5 (1-722)||(41628171-41628895)
[»] chr2 (24 HSPs)
chr2 (138-340)||(30394059-30394261)
chr2 (148-340)||(30383930-30384122)
chr2 (552-722)||(30393805-30393975)
chr2 (148-371)||(23767620-23767843)
chr2 (149-345)||(30475219-30475415)
chr2 (149-330)||(30436363-30436544)
chr2 (149-330)||(30482837-30483018)
chr2 (148-371)||(23796789-23797012)
chr2 (167-314)||(30424128-30424275)
chr2 (149-314)||(30468121-30468286)
chr2 (148-352)||(23784236-23784440)
chr2 (150-346)||(8380056-8380252)
chr2 (552-722)||(30383654-30383824)
chr2 (167-314)||(30430161-30430308)
chr2 (555-649)||(30467833-30467927)
chr2 (552-659)||(8381668-8381775)
chr2 (535-651)||(30429870-30429983)
chr2 (536-651)||(30423837-30423949)
chr2 (535-649)||(30436043-30436154)
chr2 (535-622)||(30482150-30482234)
chr2 (552-618)||(23767286-23767352)
chr2 (552-618)||(23784775-23784841)
chr2 (582-618)||(23796479-23796515)
chr2 (555-649)||(30474960-30475054)
[»] chr8 (3 HSPs)
chr8 (171-286)||(15852912-15853027)
chr8 (170-260)||(15846083-15846173)
chr8 (170-286)||(15860272-15860388)


Alignment Details
Target: chr5 (Bit Score: 658; Significance: 0; HSPs: 1)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 658; E-Value: 0
Query Start/End: Original strand, 1 - 722
Target Start/End: Original strand, 41628171 - 41628895
Alignment:
Q  1 tcgtgtaactggcctcctagtgattaattacaaatattagagacataaaaaatgaatagacttcaatagttaaacactatatatga---tataaagaata 97  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||   |||||||| ||    
T  41628171 tcgtgtaactggcctcctagtgattaattacaaatattagagacataaaaaatgaatagactttaatagttaaacactatatatgatgatataaagatta 41628270  T
Q  98 gtcttaattacctccatagaggaatgtaaaaattcatttgaacttttgtcataagttcagcttgctcaatttgaagttgaaatattcttcttccttcttc 197  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  41628271 gtcttaattacctccatagaggaatgtaaaaattcatttgaacttttgtcataagttcagcttgctcaatttgaagttgaaatattcttcttccttcttc 41628370  T
Q  198 ataactacttccgaatgttgttcgagaaataacatcactcgccaaattctgaagggaaggccatatgtctatttcacatgatccatctggagacaacatt 297  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||    
T  41628371 ataactacttccgaatgttgttcgagaaataacatcactcgccaaattctgaagggaaggccatatatctatttcacatgatccatctggagacaacatt 41628470  T
Q  298 tcctcccattttctaattaaatcgttgcaacttatgaagaaagttggtgtcataacctatagtataataaataataaagaaataaggaatagttcaaatt 397  Q
    ||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  41628471 tcctcccattttctaattaaatcgttgcaacttgtgaagaaagttggtgtcataacctatagtataataaataataaagaaataaggaatagttcaaatt 41628570  T
Q  398 ttgagtcaaacttagtgcataaacattcagatttaagagcatatatgttagcttataaacaaaactatgtagtttacagaaatgtactttgaaggccaaa 497  Q
    ||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  41628571 ttgagtcaaacttggtgcataaacattcagatttaagagcatatatgttagcttataaacaaaactatgtagtttacagaaatgtactttgaaggccaaa 41628670  T
Q  498 aatgaaggnnnnnnngcacaatttctaaatatttatttagtaaagggaaactattaaccttcaatttttctgaatggaaagcagggttgattagccttct 597  Q
    ||||||||       |||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||| |||||||||||||||||    
T  41628671 aatgaaggaaaaaaagcacaatttctaaatatttatttagtaaagggaaactaataaccttcaatttttctgaatggaaagcggggttgattagccttct 41628770  T
Q  598 atgcttgctccacttttctccctcaagacttgcaagaccactaactagtaacttgaaaatcttatgattattctttggaaagtcagagatattgttcaat 697  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  41628771 atgcttgctccacttttctccctcaagacttgcaagaccactaactagtaacttgaaaatcttatgattattctttggaaagtcagagatattgttcaat 41628870  T
Q  698 acatctatgatttgcacaggttctg 722  Q
    ||||||||||||||| |||||||||    
T  41628871 acatctatgatttgctcaggttctg 41628895  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2 (Bit Score: 127; Significance: 3e-65; HSPs: 24)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 127; E-Value: 3e-65
Query Start/End: Original strand, 138 - 340
Target Start/End: Complemental strand, 30394261 - 30394059
Alignment:
Q  138 aacttttgtcataagttcagcttgctcaatttgaagttgaaatattcttcttccttcttcataactacttccgaatgttgttcgagaaataacatcactc 237  Q
    |||| |||| |||||||||||||||||  |||||||||||||||||||| |||||||||||||||||||||| || |  |||||||||||| |||||||     
T  30394261 aactgttgttataagttcagcttgctctctttgaagttgaaatattctttttccttcttcataactacttccaaacgcagttcgagaaatagcatcactt 30394162  T
Q  238 gccaaattctgaagggaaggccatatgtctatttcacatgatccatctggagacaacatttcctcccattttctaattaaatcgttgcaacttatgaaga 337  Q
    ||||||||||| ||||||||||||| ||||||||||||||||||||||| ||||||||||||||||||||| ||||| | ||| ||||||||| ||||||    
T  30394161 gccaaattctgcagggaaggccatacgtctatttcacatgatccatctgaagacaacatttcctcccatttgctaatcatatcattgcaacttgtgaaga 30394062  T
Q  338 aag 340  Q
    |||    
T  30394061 aag 30394059  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #2
Raw Score: 117; E-Value: 3e-59
Query Start/End: Original strand, 148 - 340
Target Start/End: Complemental strand, 30384122 - 30383930
Alignment:
Q  148 ataagttcagcttgctcaatttgaagttgaaatattcttcttccttcttcataactacttccgaatgttgttcgagaaataacatcactcgccaaattct 247  Q
    |||||||||||||||||  |||||||||||||||||||| ||||||||||||| |||||||| ||||  |||||||||||| ||||||| |||||||| |    
T  30384122 ataagttcagcttgctctctttgaagttgaaatattctttttccttcttcatagctacttccaaatgcggttcgagaaatagcatcacttgccaaatttt 30384023  T
Q  248 gaagggaaggccatatgtctatttcacatgatccatctggagacaacatttcctcccattttctaattaaatcgttgcaacttatgaagaaag 340  Q
    | |||||||||||||| |||||||||||||||||||||| ||||||||||| |||||||||  |||| ||||| ||||||||| |||||||||    
T  30384022 gcagggaaggccatatatctatttcacatgatccatctgaagacaacattttctcccatttgttaatcaaatcattgcaacttgtgaagaaag 30383930  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #3
Raw Score: 103; E-Value: 7e-51
Query Start/End: Original strand, 552 - 722
Target Start/End: Complemental strand, 30393975 - 30393805
Alignment:
Q  552 taaccttcaatttttctgaatggaaagcagggttgattagccttctatgcttgctccacttttctccctcaagacttgcaagaccactaactagtaactt 651  Q
    |||||||||||| |||| |||||||||||||||||||||||||||||||||||||||| ||||||||| ||  ||| |||||||||||| ||||||||||    
T  30393975 taaccttcaattgttctaaatggaaagcagggttgattagccttctatgcttgctccatttttctcccccataactagcaagaccactagctagtaactt 30393876  T
Q  652 gaaaatcttatgattattctttggaaagtcagagatattgttcaatacatctatgatttgcacaggttctg 722  Q
    |||||||||||  ||| ||||||| |||||||| || ||||||||||||||| | |||||| |||||||||    
T  30393875 gaaaatcttatagttagtctttgggaagtcagacattttgttcaatacatcttttatttgctcaggttctg 30393805  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #4
Raw Score: 100; E-Value: 4e-49
Query Start/End: Original strand, 148 - 371
Target Start/End: Complemental strand, 23767843 - 23767620
Alignment:
Q  148 ataagttcagcttgctcaatttgaagttgaaatattcttcttccttcttcataactacttccgaatgttgttcgagaaataacatcactcgccaaattct 247  Q
    ||||||||| ||||||| |||||||||||||||| | ||||||||||||||||||||||||| ||||  |  ||||  ||||||||||| | |||  |||    
T  23767843 ataagttcaccttgctctatttgaagttgaaatacttttcttccttcttcataactacttccaaatgacgaacgagcgataacatcacttgtcaagctct 23767744  T
Q  248 gaagggaaggccatatgtctatttcacatgatccatctggagacaacatttcctcccattttctaattaaatcgttgcaacttatgaagaaagttggtgt 347  Q
    |||||||||||||||||||||||||| | ||||||| || ||||||| |||| ||||| || ||||| ||||||||||| ||| | ||||| ||||||||    
T  23767743 gaagggaaggccatatgtctatttcagaggatccatttgaagacaacgtttcttcccaattgctaatcaaatcgttgcagcttttcaagaatgttggtgt 23767644  T
Q  348 cataacctatagtataataaataa 371  Q
    ||||| |||| || ||||||||||    
T  23767643 cataatctatggtgtaataaataa 23767620  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #5
Raw Score: 97; E-Value: 3e-47
Query Start/End: Original strand, 149 - 345
Target Start/End: Complemental strand, 30475415 - 30475219
Alignment:
Q  149 taagttcagcttgctcaatttgaagttgaaatattcttcttccttcttcataactacttccgaatgttgttcgagaaataacatcactcgccaaattctg 248  Q
    |||||||||||||||| ||||||||||||||||||||| |||| ||||||||||||||||| |||| ||||| |||||||||||||||||||||||| ||    
T  30475415 taagttcagcttgctcgatttgaagttgaaatattctttttccctcttcataactacttccaaatgctgttctagaaataacatcactcgccaaattttg 30475316  T
Q  249 aagggaaggccatatgtctatttcacatgatccatctggagacaacatttcctcccattttctaattaaatcgttgcaacttatgaagaaagttggt 345  Q
    |||| ||||||| |  || | |||||||||||||||||  |||||||||  |||||||||  |||| ||||| |  |||||| |||||||| |||||    
T  30475315 aaggaaaggccaaacatccaattcacatgatccatctgatgacaacattctctcccatttggtaatcaaatcatcacaacttttgaagaaaattggt 30475219  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #6
Raw Score: 94; E-Value: 2e-45
Query Start/End: Original strand, 149 - 330
Target Start/End: Complemental strand, 30436544 - 30436363
Alignment:
Q  149 taagttcagcttgctcaatttgaagttgaaatattcttcttccttcttcataactacttccgaatgttgttcgagaaataacatcactcgccaaattctg 248  Q
    ||||||||||||| ||  |||||||||||||||||||| |||| ||||||||||||||||| || | || ||||||||||| |||||| |||||||| ||    
T  30436544 taagttcagcttgttcggtttgaagttgaaatattctttttccctcttcataactacttccaaacgctgctcgagaaataagatcactggccaaattttg 30436445  T
Q  249 aagggaaggccatatgtctatttcacatgatccatctggagacaacatttcctcccattttctaattaaatcgttgcaactt 330  Q
    |||| ||||||||| ||| |||||||||||||||||||  |||||||||| ||||||||| ||||| ||||| | |||||||    
T  30436444 aaggaaaggccatacgtccatttcacatgatccatctgacgacaacattttctcccatttgctaatcaaatcatcgcaactt 30436363  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #7
Raw Score: 94; E-Value: 2e-45
Query Start/End: Original strand, 149 - 330
Target Start/End: Complemental strand, 30483018 - 30482837
Alignment:
Q  149 taagttcagcttgctcaatttgaagttgaaatattcttcttccttcttcataactacttccgaatgttgttcgagaaataacatcactcgccaaattctg 248  Q
    ||||||||||||||||  ||||||||||||||||| || |||||||||||||||||||||| |||| |||||||| |||||||||||| |||||||| ||    
T  30483018 taagttcagcttgctccttttgaagttgaaatatttttattccttcttcataactacttccaaatgctgttcgagcaataacatcactagccaaattttg 30482919  T
Q  249 aagggaaggccatatgtctatttcacatgatccatctggagacaacatttcctcccattttctaattaaatcgttgcaactt 330  Q
    || |||||||||||  || ||||||||||||||||||   || |||||| |||||||||| ||||| | ||| |||||||||    
T  30482918 aatggaaggccatacatcaatttcacatgatccatctaatgataacattccctcccatttgctaatcatatcattgcaactt 30482837  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #8
Raw Score: 92; E-Value: 3e-44
Query Start/End: Original strand, 148 - 371
Target Start/End: Complemental strand, 23797012 - 23796789
Alignment:
Q  148 ataagttcagcttgctcaatttgaagttgaaatattcttcttccttcttcataactacttccgaatgttgttcgagaaataacatcactcgccaaattct 247  Q
    ||||||||| ||||||| |||||||||||||||| | ||||||||||||||||||||||||| ||||  |  ||||  ||||||||||| | |||  |||    
T  23797012 ataagttcaccttgctctatttgaagttgaaatacttttcttccttcttcataactacttccaaatgacgaacgagcgataacatcacttgtcaagctct 23796913  T
Q  248 gaagggaaggccatatgtctatttcacatgatccatctggagacaacatttcctcccattttctaattaaatcgttgcaacttatgaagaaagttggtgt 347  Q
    |||||||||||||||||||||||||| | | ||||  || ||||||| |||| ||||| || ||||| ||||||||||| ||| | ||||| ||||||||    
T  23796912 gaagggaaggccatatgtctatttcagaggctccacttgaagacaacgtttcttcccaattgctaatcaaatcgttgcagcttttcaagaatgttggtgt 23796813  T
Q  348 cataacctatagtataataaataa 371  Q
    ||||| |||| || ||||||||||    
T  23796812 cataatctatggtgtaataaataa 23796789  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #9
Raw Score: 92; E-Value: 3e-44
Query Start/End: Original strand, 167 - 314
Target Start/End: Complemental strand, 30424275 - 30424128
Alignment:
Q  167 tttgaagttgaaatattcttcttccttcttcataactacttccgaatgttgttcgagaaataacatcactcgccaaattctgaagggaaggccatatgtc 266  Q
    |||||||||||||||||||| |||| ||||||||||||||||| ||||  | ||||||||||||||||||||||||||| |||||| ||||||||| |||    
T  30424275 tttgaagttgaaatattctttttccctcttcataactacttccaaatgcagctcgagaaataacatcactcgccaaattttgaaggaaaggccatacgtc 30424176  T
Q  267 tatttcacatgatccatctggagacaacatttcctcccattttctaat 314  Q
     ||||||||||||||||||| || |||||||| ||||||||| |||||    
T  30424175 catttcacatgatccatctgaagccaacattttctcccatttgctaat 30424128  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #10
Raw Score: 90; E-Value: 4e-43
Query Start/End: Original strand, 149 - 314
Target Start/End: Complemental strand, 30468286 - 30468121
Alignment:
Q  149 taagttcagcttgctcaatttgaagttgaaatattcttcttccttcttcataactacttccgaatgttgttcgagaaataacatcactcgccaaattctg 248  Q
    ||||||||||||| ||  |||||||||||||||||||| |||| ||||||||||||||||| || | || |||||||||||||||||| || ||||| ||    
T  30468286 taagttcagcttgttcggtttgaagttgaaatattctttttccctcttcataactacttccaaacgctgctcgagaaataacatcactggcaaaattttg 30468187  T
Q  249 aagggaaggccatatgtctatttcacatgatccatctggagacaacatttcctcccattttctaat 314  Q
    |||| ||||||||| ||| |||||||||||||||||||  |||||||||| ||||||||| |||||    
T  30468186 aaggaaaggccatacgtccatttcacatgatccatctgacgacaacattttctcccatttgctaat 30468121  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #11
Raw Score: 89; E-Value: 2e-42
Query Start/End: Original strand, 148 - 352
Target Start/End: Original strand, 23784236 - 23784440
Alignment:
Q  148 ataagttcagcttgctcaatttgaagttgaaatattcttcttccttcttcataactacttccgaatgttgttcgagaaataacatcactcgccaaattct 247  Q
    ||||||||| ||||||| |||||||||||||||| | ||||||||||||||||||||||||| ||||  |  ||||  ||||||||||| | |||  |||    
T  23784236 ataagttcaccttgctctatttgaagttgaaatacttttcttccttcttcataactacttccaaatgacgaacgagcgataacatcacttgtcaagctct 23784335  T
Q  248 gaagggaaggccatatgtctatttcacatgatccatctggagacaacatttcctcccattttctaattaaatcgttgcaacttatgaagaaagttggtgt 347  Q
    ||||||||||||||| ||| |||||||||||||||| || |||||||||||  ||||| || ||||| ||||| ||||| ||| | ||||| ||||||||    
T  23784336 gaagggaaggccatacgtccatttcacatgatccatttgaagacaacattttttcccaattgctaatcaaatcattgcagcttttcaagaatgttggtgt 23784435  T
Q  348 cataa 352  Q
    |||||    
T  23784436 cataa 23784440  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #12
Raw Score: 85; E-Value: 4e-40
Query Start/End: Original strand, 150 - 346
Target Start/End: Original strand, 8380056 - 8380252
Alignment:
Q  150 aagttcagcttgctcaatttgaagttgaaatattcttcttccttcttcataactacttccgaatgttgttcgagaaataacatcactcgccaaattctga 249  Q
    ||||||| |||||||  ||||||| | |||||||||| |||||||||| ||||||||||| ||||   ||||||||||||||||||| | |||||||||     
T  8380056 aagttcaccttgctctctttgaagatcaaatattctttttccttcttcgtaactacttccaaatgcgtttcgagaaataacatcacttgtcaaattctgt 8380155  T
Q  250 agggaaggccatatgtctatttcacatgatccatctggagacaacatttcctcccattttctaattaaatcgttgcaacttatgaagaaagttggtg 346  Q
    ||||||||||||||||||||||||| |||||||||||  |||||| ||  ||||||||| ||||| | |||  |||||||| ||| |||| ||||||    
T  8380156 agggaaggccatatgtctatttcacctgatccatctgatgacaacgttgactcccatttgctaatcatatcaatgcaacttgtgaggaaacttggtg 8380252  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #13
Raw Score: 79; E-Value: 1e-36
Query Start/End: Original strand, 552 - 722
Target Start/End: Complemental strand, 30383824 - 30383654
Alignment:
Q  552 taaccttcaatttttctgaatggaaagcagggttgattagccttctatgcttgctccacttttctccctcaagacttgcaagaccactaactagtaactt 651  Q
    |||||||||| |||||| ||||||||||||||||||||||| |||||||||||||||||||||||||||||  | | |||||  || || ||||||||||    
T  30383824 taaccttcaacttttctaaatggaaagcagggttgattagctttctatgcttgctccacttttctccctcataattagcaagtgcattagctagtaactt 30383725  T
Q  652 gaaaatcttatgattattctttggaaagtcagagatattgttcaatacatctatgatttgcacaggttctg 722  Q
    ||||||||| | ||||  |||||| || ||||| || |||||||| |||||| | |||||| |||||||||    
T  30383724 gaaaatcttgtaattaggctttgggaattcagacatcttgttcaacacatcttttatttgctcaggttctg 30383654  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #14
Raw Score: 76; E-Value: 9e-35
Query Start/End: Original strand, 167 - 314
Target Start/End: Complemental strand, 30430308 - 30430161
Alignment:
Q  167 tttgaagttgaaatattcttcttccttcttcataactacttccgaatgttgttcgagaaataacatcactcgccaaattctgaagggaaggccatatgtc 266  Q
    |||||||||||||||||||| |||| ||||||||||||||||| ||||  | ||||||||||||||| || || ||||| |||||| |||||||||  ||    
T  30430308 tttgaagttgaaatattctttttccctcttcataactacttccaaatgcagctcgagaaataacatctcttgctaaattttgaaggaaaggccatacttc 30430209  T
Q  267 tatttcacatgatccatctggagacaacatttcctcccattttctaat 314  Q
     ||||||||||||||||||| || |||||||| ||||||||| |||||    
T  30430208 catttcacatgatccatctgaagccaacattttctcccatttgctaat 30430161  T

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Target: chr2; HSP #15
Raw Score: 55; E-Value: 3e-22
Query Start/End: Original strand, 555 - 649
Target Start/End: Complemental strand, 30467927 - 30467833
Alignment:
Q  555 ccttcaatttttctgaatggaaagcagggttgattagccttctatgcttgctccacttttctccctcaagacttgcaagaccactaactagtaac 649  Q
    |||||||||||||| ||||||| ||||| ||||||| | |||| ||||||||||||| |||||||||||||||| |||||||| || ||||||||    
T  30467927 ccttcaatttttctaaatggaatgcaggattgattatctttctgtgcttgctccactgttctccctcaagacttacaagaccattagctagtaac 30467833  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #16
Raw Score: 52; E-Value: 2e-20
Query Start/End: Original strand, 552 - 659
Target Start/End: Original strand, 8381668 - 8381775
Alignment:
Q  552 taaccttcaatttttctgaatggaaagcagggttgattagccttctatgcttgctccacttttctccctcaagacttgcaagaccactaactagtaactt 651  Q
    ||||||||||||||||| | |||||||||| ||| |||| |||||||||||| |||||||||||||||||  || ||  ||||||||||| ||| || ||    
T  8381668 taaccttcaatttttctaactggaaagcagcgttcattaaccttctatgctttctccacttttctccctcgtgaattataagaccactaaatagaaattt 8381767  T
Q  652 gaaaatct 659  Q
    ||||||||    
T  8381768 gaaaatct 8381775  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #17
Raw Score: 51; E-Value: 8e-20
Query Start/End: Original strand, 535 - 651
Target Start/End: Complemental strand, 30429983 - 30429870
Alignment:
Q  535 tagtaaagggaaactattaaccttcaatttttctgaatggaaagcagggttgattagccttctatgcttgctccacttttctccctcaagacttgcaaga 634  Q
    ||||||||||||||| |   ||||||||||||||  |||||| ||||||||||| | | |||| ||||||||||||| |||||||||| ||||||||||     
T  30429983 tagtaaagggaaacttt---ccttcaatttttctacatggaatgcagggttgataatctttctgtgcttgctccactgttctccctcatgacttgcaagg 30429887  T
Q  635 ccactaactagtaactt 651  Q
    ||| || ||||||||||    
T  30429886 ccattagctagtaactt 30429870  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #18
Raw Score: 50; E-Value: 3e-19
Query Start/End: Original strand, 536 - 651
Target Start/End: Complemental strand, 30423949 - 30423837
Alignment:
Q  536 agtaaagggaaactattaaccttcaatttttctgaatggaaagcagggttgattagccttctatgcttgctccacttttctccctcaagacttgcaagac 635  Q
    |||||||||||||| |   |||||||||||||| ||||||| ||||||||||| | | |||| ||||||||||||| |||||||||| |||||  |||||    
T  30423949 agtaaagggaaacttt---ccttcaatttttctaaatggaatgcagggttgataatctttctgtgcttgctccactgttctccctcatgacttataagac 30423853  T
Q  636 cactaactagtaactt 651  Q
    || || ||||||||||    
T  30423852 cattagctagtaactt 30423837  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #19
Raw Score: 49; E-Value: 1e-18
Query Start/End: Original strand, 535 - 649
Target Start/End: Complemental strand, 30436154 - 30436043
Alignment:
Q  535 tagtaaagggaaactattaaccttcaatttttctgaatggaaagcagggttgattagccttctatgcttgctccacttttctccctcaagacttgcaaga 634  Q
    |||||||||||||||    ||||||||||||||| ||||||| ||||| || |||| | |||| ||||||||||||| |||||||||||||| | |||||    
T  30436154 tagtaaagggaaactt---accttcaatttttctaaatggaatgcaggatttattatctttctgtgcttgctccactgttctccctcaagacatacaaga 30436058  T
Q  635 ccactaactagtaac 649  Q
    |||| | ||||||||    
T  30436057 ccacaacctagtaac 30436043  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #20
Raw Score: 46; E-Value: 7e-17
Query Start/End: Original strand, 535 - 622
Target Start/End: Complemental strand, 30482234 - 30482150
Alignment:
Q  535 tagtaaagggaaactattaaccttcaatttttctgaatggaaagcagggttgattagccttctatgcttgctccacttttctccctca 622  Q
    ||||||||||||||||   ||||||||||||||| ||||||| ||||| || |||| | |||||||||||||||||||||| ||||||    
T  30482234 tagtaaagggaaacta---accttcaatttttctaaatggaatgcaggatttattatctttctatgcttgctccacttttcaccctca 30482150  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #21
Raw Score: 39; E-Value: 0.000000000001
Query Start/End: Original strand, 552 - 618
Target Start/End: Complemental strand, 23767352 - 23767286
Alignment:
Q  552 taaccttcaatttttctgaatggaaagcagggttgattagccttctatgcttgctccacttttctcc 618  Q
    ||||||||||||||||    || |||||||||||||||| ||||||||||||| |||||||||||||    
T  23767352 taaccttcaatttttccatgtgaaaagcagggttgattatccttctatgcttggtccacttttctcc 23767286  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #22
Raw Score: 35; E-Value: 0.0000000003
Query Start/End: Original strand, 552 - 618
Target Start/End: Original strand, 23784775 - 23784841
Alignment:
Q  552 taaccttcaatttttctgaatggaaagcagggttgattagccttctatgcttgctccacttttctcc 618  Q
    ||||||||||||||||    || || |||||||||||||  ||||||||||||||||||||||||||    
T  23784775 taaccttcaatttttccatgtgaaacgcagggttgattattcttctatgcttgctccacttttctcc 23784841  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #23
Raw Score: 33; E-Value: 0.000000004
Query Start/End: Original strand, 582 - 618
Target Start/End: Complemental strand, 23796515 - 23796479
Alignment:
Q  582 ggttgattagccttctatgcttgctccacttttctcc 618  Q
    ||||||||| |||||||||||||||||||||||||||    
T  23796515 ggttgattatccttctatgcttgctccacttttctcc 23796479  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #24
Raw Score: 31; E-Value: 0.00000007
Query Start/End: Original strand, 555 - 649
Target Start/End: Complemental strand, 30475054 - 30474960
Alignment:
Q  555 ccttcaatttttctgaatggaaagcagggttgattagccttctatgcttgctccacttttctccctcaagacttgcaagaccactaactagtaac 649  Q
    ||||||||||||||  || ||| || || || |||||| |||| ||||||||||||||||| ||||| ||  || |||||||| || ||||||||    
T  30475054 ccttcaatttttctatattgaatgccggattaattagctttctgtgcttgctccacttttcgccctcgaggtttacaagaccattagctagtaac 30474960  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8 (Bit Score: 36; Significance: 0.00000000007; HSPs: 3)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 36; E-Value: 0.00000000007
Query Start/End: Original strand, 171 - 286
Target Start/End: Original strand, 15852912 - 15853027
Alignment:
Q  171 aagttgaaatattcttcttccttcttcataactacttccgaatgttgttcgagaaataacatcactcgccaaattctgaagggaaggccatatgtctatt 270  Q
    ||||||||||| | || |||||||| | || || ||||| |||| ||| |||||||| ||||||| || ||||||||||||| ||||||| |  || ||     
T  15852912 aagttgaaatagttttgttccttctgcgtagctgcttccaaatgctgtccgagaaattacatcacacgtcaaattctgaaggaaaggccaaacatcaatc 15853011  T
Q  271 tcacatgatccatctg 286  Q
    ||||||| ||||||||    
T  15853012 tcacatgttccatctg 15853027  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #2
Raw Score: 35; E-Value: 0.0000000003
Query Start/End: Original strand, 170 - 260
Target Start/End: Original strand, 15846083 - 15846173
Alignment:
Q  170 gaagttgaaatattcttcttccttcttcataactacttccgaatgttgttcgagaaataacatcactcgccaaattctgaagggaaggcca 260  Q
    |||||||||||||| ||  ||||||| |||| || ||||| |||| ||||| |||||| |||||||  | ||||||||||||| |||||||    
T  15846083 gaagttgaaatatttttgctccttctgcatagctgcttccaaatgctgttctagaaattacatcacaggtcaaattctgaaggaaaggcca 15846173  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #3
Raw Score: 33; E-Value: 0.000000004
Query Start/End: Original strand, 170 - 286
Target Start/End: Original strand, 15860272 - 15860388
Alignment:
Q  170 gaagttgaaatattcttcttccttcttcataactacttccgaatgttgttcgagaaataacatcactcgccaaattctgaagggaaggccatatgtctat 269  Q
    |||||||||||| | || |||||||| | || || ||||| |||| ||| |||||||| |||||||  |  |||||||||||||||||||| |  || ||    
T  15860272 gaagttgaaatagttttgttccttctgcgtagctgcttccaaatgctgtccgagaaattacatcacaggtaaaattctgaagggaaggccaaacatcaat 15860371  T
Q  270 ttcacatgatccatctg 286  Q
     ||||||| ||||||||    
T  15860372 ctcacatgttccatctg 15860388  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]



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