View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF4091_low_17 (Length: 407)
Name: NF4091_low_17
Description: NF4091
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF4091_low_17 |
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Alignment Details
Target: chr1 (Bit Score: 229; Significance: 1e-126; HSPs: 5)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 229; E-Value: 1e-126
Query Start/End: Original strand, 11 - 276
Target Start/End: Complemental strand, 47714204 - 47713923
Alignment:
| Q |
11 |
atgaagggaggaagaaggaagaatggggtaatggttttgttggcttttcaattggcagcgaatattatgatctcttcaataccacttacttgcaatttta |
110 |
Q |
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| T |
47714204 |
atgaagggaggaagaaggaagaatggggtaatggttttgttggcttttcaattggcagcgaatattatgatctcttcaataccacttacttgcaatttta |
47714105 |
T |
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| Q |
111 |
accattaagtttactcctttggcataagtggtccatccctcaattgtgacaacgctgacgcacatgtgacatatcattaa----------------atgc |
194 |
Q |
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| T |
47714104 |
accattaagtttactcctttggcataagtggtccatccctcaattgtgacaacgctgacgcacatgtgacatatcattaagtaactaggatgacacatgc |
47714005 |
T |
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| Q |
195 |
ggtatgaatgcaggctatagttttgacgacataaaatcttcataataataagttgtgtgatgattaacaaagcgttgctttc |
276 |
Q |
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| T |
47714004 |
ggtatgaatgcaggctatagttttgacgacataaaatcttcataataataagttgtgtgatgattaacaaagcgttgctttc |
47713923 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #2
Raw Score: 79; E-Value: 8e-37
Query Start/End: Original strand, 11 - 93
Target Start/End: Complemental strand, 47721352 - 47721270
Alignment:
| Q |
11 |
atgaagggaggaagaaggaagaatggggtaatggttttgttggcttttcaattggcagcgaatattatgatctcttcaatacc |
93 |
Q |
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| T |
47721352 |
atgaagggaggaagaaggaagaatggggtaatggttttgttggcttttcaattggcagcgaatactatgatctcttcaatacc |
47721270 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #3
Raw Score: 79; E-Value: 8e-37
Query Start/End: Original strand, 11 - 93
Target Start/End: Complemental strand, 47728344 - 47728262
Alignment:
| Q |
11 |
atgaagggaggaagaaggaagaatggggtaatggttttgttggcttttcaattggcagcgaatattatgatctcttcaatacc |
93 |
Q |
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| T |
47728344 |
atgaagggaggaagaaggaagaatggggtaatggttttgttggcttttcaattggcagcgaatactatgatctcttcaatacc |
47728262 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #4
Raw Score: 51; E-Value: 4e-20
Query Start/End: Original strand, 341 - 391
Target Start/End: Complemental strand, 47713858 - 47713808
Alignment:
| Q |
341 |
tgcaagccattagtcataagtgttttgattataaaaattagatgttactag |
391 |
Q |
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| T |
47713858 |
tgcaagccattagtcataagtgttttgattataaaaattagatgttactag |
47713808 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #5
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 195 - 251
Target Start/End: Complemental strand, 47745072 - 47745015
Alignment:
| Q |
195 |
ggtatgaatgcaggctatagttttgacgacataaaatct---tcataataataagttgtg |
251 |
Q |
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| T |
47745072 |
ggtatgaatgcagg--ataattttgacgacataaaatctacttcataataataagttgtg |
47745015 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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