View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF4091_low_19 (Length: 390)

Name: NF4091_low_19
Description: NF4091
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF4091_low_19
NF4091_low_19
[»] chr6 (1 HSPs)
chr6 (1-390)||(4916194-4916583)
[»] chr8 (10 HSPs)
chr8 (115-390)||(2930101-2930364)
chr8 (121-390)||(3012415-3012672)
chr8 (3-111)||(3012789-3012897)
chr8 (143-389)||(37795609-37795858)
chr8 (1-111)||(2929880-2929990)
chr8 (126-386)||(2946750-2946998)
chr8 (23-109)||(37795382-37795468)
chr8 (141-390)||(2920725-2920977)
chr8 (27-109)||(2920504-2920586)
chr8 (1-109)||(2946518-2946626)
[»] chr3 (2 HSPs)
chr3 (122-390)||(1506727-1507001)
chr3 (1-111)||(1507122-1507232)
[»] chr2 (2 HSPs)
chr2 (141-390)||(28024602-28024854)
chr2 (23-109)||(28024389-28024475)


Alignment Details
Target: chr6 (Bit Score: 370; Significance: 0; HSPs: 1)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 370; E-Value: 0
Query Start/End: Original strand, 1 - 390
Target Start/End: Complemental strand, 4916583 - 4916194
Alignment:
Q  1 accccttctcaacttcactaaagacacctattgcattgagttctttctggaaagatgcaattttaggtccataccaattctcatcaataaaaggtccatc 100  Q
    |||||||||||||||||| || ||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  4916583 accccttctcaacttcaccaatgacccctattgcattgagttctttctggaaagatgcaattttaggtccataccaattctcatcaataaaaggtccatc 4916484  T
Q  101 agttggattcagaagcaagtttgtgatcttgcattagaactcggatgcatcccagaaaagaaaacacacttttaggcttaatagtggagggttttgaagg 200  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  4916483 agttggattcagaagcaagtttgtgatcttgcattagaactcggatgcatcccagaaaagaaaacacacttttaggcttaatagtggagggttttgaagg 4916384  T
Q  201 aaattttagacattcggacgcaaacttcactccatctttcaattgagtaacaacgccaaagctcttcagctctgccttgtactcatgcattctcatacca 300  Q
    ||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  4916383 aaattttagacattcggacacaaacttcactccatctttcaattgagtaacaacgccaaagctcttcagctctgccttgtactcatgcattctcatacca 4916284  T
Q  301 cgtttcgtactgtaatcaatgaaagggagacaagttatagaagatattgattcccactccggaccatataaaatgcattctcttgggcac 390  Q
    |||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  4916283 cgtttcgtaccgtaatcaatgaaagggagacaagttatagaagatattgattcccactccggaccatataaaatgcattctcttgggcac 4916194  T

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Target: chr8 (Bit Score: 83; Significance: 3e-39; HSPs: 10)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 83; E-Value: 3e-39
Query Start/End: Original strand, 115 - 390
Target Start/End: Original strand, 2930101 - 2930364
Alignment:
Q  115 gcaagtttgtgatcttgcattagaactcggatgcatcccagaaaagaaaacacacttttaggcttaatagtggagggttttgaaggaaattttagacatt 214  Q
    ||||| |||| |||||| ||||||| | |||||||| |||  |||||||||||||||| |||  |||| |||||||| ||||||||||| || |||||||    
T  2930101 gcaaggttgttatcttgtattagaagttggatgcattccaataaagaaaacacactttcaggactaatggtggagggatttgaaggaaaattcagacatt 2930200  T
Q  215 cggacgcaaacttcactccatctttcaattgagtaacaacgccaaagctcttcagctctgccttgtactcatgcattctcataccacgtttcgtactgta 314  Q
    | | | ||||| |||  || |||||||||| ||||||||| |||| |||||||||||||||||||||  |            ||||| |||   ||| ||    
T  2930201 cagccacaaacctcaacccgtctttcaattcagtaacaacaccaatgctcttcagctctgccttgtaacc------------accacatttgtcactata 2930288  T
Q  315 atcaatgaaagggagacaagttatagaagatattgattcccactccggaccatataaaatgcattctcttgggcac 390  Q
    ||||||||||||||||| ||||||||||||||||||||||||||||||||  ||||||||||| | | ||||||||    
T  2930289 atcaatgaaagggagacgagttatagaagatattgattcccactccggactgtataaaatgcaattttttgggcac 2930364  T

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Target: chr8; HSP #2
Raw Score: 73; E-Value: 3e-33
Query Start/End: Original strand, 121 - 390
Target Start/End: Complemental strand, 3012672 - 3012415
Alignment:
Q  121 ttgtgatcttgcattagaactcggatgcatcccagaaaagaaaacacacttttaggcttaatagtggagggttttgaaggaaattttagacattcggacg 220  Q
    |||| |||| ||||||||| | |||||| | |||| |||| ||||||||||| |||  ||||  ||||||| |||||||||||  | |||||||| | |     
T  3012672 ttgttatctagcattagaagttggatgctttccagcaaagcaaacacactttcaggactaatgatggagggatttgaaggaaacatcagacattcagcca 3012573  T
Q  221 caaacttcactccatctttcaattgagtaacaacgccaaagctcttcagctctgccttgtactcatgcattctcataccacgtttcgtactgtaatcaat 320  Q
    ||||  |||  || |||||||||| ||||||||| |||| |||||||||||||||||| ||  ||            | || |||   ||| ||||||||    
T  3012572 caaaactcaacccgtctttcaattcagtaacaacaccaatgctcttcagctctgccttataacca------------caacatttgtcactataatcaat 3012485  T
Q  321 gaaagggagacaagttatagaagatattgattcccactccggaccatataaaatgcattctcttgggcac 390  Q
    |||||||||||||||||||||||||||||||| |||||||||||||||||||||||||| ||||||||||    
T  3012484 gaaagggagacaagttatagaagatattgatttccactccggaccatataaaatgcattttcttgggcac 3012415  T

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Target: chr8; HSP #3
Raw Score: 69; E-Value: 7e-31
Query Start/End: Original strand, 3 - 111
Target Start/End: Complemental strand, 3012897 - 3012789
Alignment:
Q  3 cccttctcaacttcactaaagacacctattgcattgagttctttctggaaagatgcaattttaggtccataccaattctcatcaataaaaggtccatcag 102  Q
    ||||||||||||||||||  ||| ||||||||||| |||||||||||||||  ||||||||||||||||||  | ||||||||||||||||| |||||||    
T  3012897 cccttctcaacttcactagtgacccctattgcattcagttctttctggaaaattgcaattttaggtccataaaatttctcatcaataaaaggcccatcag 3012798  T
Q  103 ttggattca 111  Q
    |||||||||    
T  3012797 ttggattca 3012789  T

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Target: chr8; HSP #4
Raw Score: 68; E-Value: 3e-30
Query Start/End: Original strand, 143 - 389
Target Start/End: Original strand, 37795609 - 37795858
Alignment:
Q  143 ggatgcatcccagaaaagaaaacacacttttaggcttaatagtggagggttttgaaggaaattttagacattcggacgcaaacttcactccatctttcaa 242  Q
    |||||||| |||| |||||||||||||||| |||  |||| |||||||| | ||||||||| || |||||||  | | ||||| |||| |||| ||||||    
T  37795609 ggatgcattccagcaaagaaaacacactttcaggagtaatggtggagggatctgaaggaaaattcagacatttaggcacaaacctcacaccatgtttcaa 37795708  T
Q  243 ttgagtaacaacgccaaagctcttcagctctgccttgtactcatgcattctcataccacg---tttcgtactgtaatcaatgaaagggagacaagttata 339  Q
    || ||||||||| |||| | ||||||| ||| ||||||| ||||| ||   | |||||     |||   |||||  |||||||||||||||||||| ||     
T  37795709 ttcagtaacaacaccaaggttcttcagttcttccttgtattcatgtatagccgtaccataaaatttgtcactgtcgtcaatgaaagggagacaagtaatc 37795808  T
Q  340 gaagatattgattcccactccggaccatataaaatgcattctcttgggca 389  Q
    |||||||| |||| |||||||||||||||||||||||||| | |||||||    
T  37795809 gaagatatagatttccactccggaccatataaaatgcattgttttgggca 37795858  T

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Target: chr8; HSP #5
Raw Score: 67; E-Value: 1e-29
Query Start/End: Original strand, 1 - 111
Target Start/End: Original strand, 2929880 - 2929990
Alignment:
Q  1 accccttctcaacttcactaaagacacctattgcattgagttctttctggaaagatgcaattttaggtccataccaattctcatcaataaaaggtccatc 100  Q
    ||||||| ||||||||||||| ||| ||||| || |||||||||||||||||| ||||||| || ||||||||  |||||||||| ||||||||||||||    
T  2929880 accccttttcaacttcactaatgacccctatcgcgttgagttctttctggaaaaatgcaatatttggtccataaaaattctcatctataaaaggtccatc 2929979  T
Q  101 agttggattca 111  Q
    |||||||||||    
T  2929980 agttggattca 2929990  T

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Target: chr8; HSP #6
Raw Score: 60; E-Value: 2e-25
Query Start/End: Original strand, 126 - 386
Target Start/End: Original strand, 2946750 - 2946998
Alignment:
Q  126 atcttgcattagaactcggatgcatcccagaaaagaaaacacacttttaggcttaatagtggagggttttgaaggaaattttagacattcggacgcaaac 225  Q
    |||||||||||||| |||||||||| |||  |||||| ||||||||| |||  |||||||||| || || |||||||| || ||| |||| |   ||||     
T  2946750 atcttgcattagaagtcggatgcattccatcaaagaacacacactttcaggagtaatagtggatggattggaaggaaaattcagagattcaggtacaaat 2946849  T
Q  226 ttcactccatctttcaattgagtaacaacgccaaagctcttcagctctgccttgtactcatgcattctcataccacgtttcgtactgtaatcaatgaaag 325  Q
     |||||||||||||||||| ||||||||| |||| |  | | ||||||  ||||||||  || ||||||            ||||| |  ||||||||||    
T  2946850 gtcactccatctttcaattcagtaacaacaccaatgtgcataagctcttgcttgtacttgtgtattctc------------gtactatcgtcaatgaaag 2946937  T
Q  326 ggagacaagttatagaagatattgattcccactccggaccatataaaatgcattctcttgg 386  Q
    |||||||||| || ||||| || ||| ||||||||||||||||||||||||||||||||||    
T  2946938 ggagacaagtaattgaagaaatagatccccactccggaccatataaaatgcattctcttgg 2946998  T

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Target: chr8; HSP #7
Raw Score: 55; E-Value: 2e-22
Query Start/End: Original strand, 23 - 109
Target Start/End: Original strand, 37795382 - 37795468
Alignment:
Q  23 gacacctattgcattgagttctttctggaaagatgcaattttaggtccataccaattctcatcaataaaaggtccatcagttggatt 109  Q
    |||||| |||||||||| |||||||||||||||||| ||||||||||||||  ||||  ||||||||||||| ||||||||||||||    
T  37795382 gacaccgattgcattgaattctttctggaaagatgctattttaggtccataaaaatttgcatcaataaaaggcccatcagttggatt 37795468  T

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Target: chr8; HSP #8
Raw Score: 51; E-Value: 4e-20
Query Start/End: Original strand, 141 - 390
Target Start/End: Original strand, 2920725 - 2920977
Alignment:
Q  141 tcggatgcatcccagaaaagaaaacacacttttaggcttaatagtggagggttttgaaggaaattttagacattcggacgcaaacttcactccatctttc 240  Q
    ||||||||||  ||| |||||||||||||| | |||  |||| |||||||| | ||||||||| || | ||||   | | ||||| ||||||||| ||||    
T  2920725 tcggatgcatttcagcaaagaaaacacactgtcaggactaatggtggagggatctgaaggaaaattcaaacatgtaggcacaaacctcactccatttttc 2920824  T
Q  241 aattgagtaacaacgccaaagctcttcagctctgccttgtactcatgcattctcatacc---acgtttcgtactgtaatcaatgaaagggagacaagtta 337  Q
    |||| ||||||||| |||| ||||||||| ||| | ||||| ||||| ||   ||||||   |  |||   |||||  |||||||||||||||| ||| |    
T  2920825 aattcagtaacaacaccaatgctcttcagatcttctttgtattcatgtatagccataccataaaatttgtcactgtcgtcaatgaaagggagacgagtaa 2920924  T
Q  338 tagaagatattgattcccactccggaccatataaaatgcattctcttgggcac 390  Q
      |||||||| |||| |||||||||||| ||||||||||| | ||||||||||    
T  2920925 ccgaagatatagatttccactccggaccgtataaaatgcaatatcttgggcac 2920977  T

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Target: chr8; HSP #9
Raw Score: 43; E-Value: 0.000000000000002
Query Start/End: Original strand, 27 - 109
Target Start/End: Original strand, 2920504 - 2920586
Alignment:
Q  27 cctattgcattgagttctttctggaaagatgcaattttaggtccataccaattctcatcaataaaaggtccatcagttggatt 109  Q
    |||||||||  ||||||||||||||||||||| || |||  ||||||  |||| ||||||||||||||||| |||||||||||    
T  2920504 cctattgcaccgagttctttctggaaagatgctatcttaattccataaaaattttcatcaataaaaggtccgtcagttggatt 2920586  T

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Target: chr8; HSP #10
Raw Score: 37; E-Value: 0.000000000009
Query Start/End: Original strand, 1 - 109
Target Start/End: Original strand, 2946518 - 2946626
Alignment:
Q  1 accccttctcaacttcactaaagacacctattgcattgagttctttctggaaagatgcaattttaggtccataccaattctcatcaataaaaggtccatc 100  Q
    |||| |||||||||||||||| ||| ||||| |||  ||||||||| ||| ||    |||||| |||||||||  || |||||||||||||||| ||||     
T  2946518 accctttctcaacttcactaatgacccctatggcagcgagttctttatggtaaaggacaatttcaggtccataaaaactctcatcaataaaaggcccatt 2946617  T
Q  101 agttggatt 109  Q
    |||||||||    
T  2946618 agttggatt 2946626  T

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Target: chr3 (Bit Score: 79; Significance: 8e-37; HSPs: 2)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 79; E-Value: 8e-37
Query Start/End: Original strand, 122 - 390
Target Start/End: Complemental strand, 1507001 - 1506727
Alignment:
Q  122 tgtgatcttgcattagaactcggatgcatcccagaaaagaaaacacacttttaggcttaatagtggagggttttgaaggaaattttagacattcggacgc 221  Q
    |||||| ||||||||||| | |||| ||| |||| |||||||||||||||| |||  |||| ||||| || || ||||||||  | | |||||| | |      
T  1507001 tgtgattttgcattagaagttggatccattccagcaaagaaaacacactttcaggagtaatggtggaaggattggaaggaaaactcaaacattcaggcaa 1506902  T
Q  222 aaacttcactccatctttcaattgagtaacaacgccaaagctcttcagctctgccttgtactcatgcattctcataccac---gtttcgtactgt---aa 315  Q
    |||| || ||||||||||||||| ||||||||| |||| ||||| ||||||| |||||||||| |  |||| |||||||    ||||   |||||   ||    
T  1506901 aaacctcgctccatctttcaattcagtaacaacaccaatgctctccagctcttccttgtactcgtatattcccataccagactgtttgtcactgttataa 1506802  T
Q  316 tcaatgaaagggagacaagttatagaagatattgattcccactccggaccatataaaatgcattctcttgggcac 390  Q
    | ||||||||||||||||||||| |||||||||||||||||||| ||||||||||||||||| | | ||||||||    
T  1506801 tgaatgaaagggagacaagttatggaagatattgattcccactctggaccatataaaatgcactttgttgggcac 1506727  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #2
Raw Score: 55; E-Value: 2e-22
Query Start/End: Original strand, 1 - 111
Target Start/End: Complemental strand, 1507232 - 1507122
Alignment:
Q  1 accccttctcaacttcactaaagacacctattgcattgagttctttctggaaagatgcaattttaggtccataccaattctcatcaataaaaggtccatc 100  Q
    ||||||||||||||||||||  ||| |||||||||||||||||||||||| ||  ||||||||||||||| ||  ||| |||||  |||||||| |||||    
T  1507232 accccttctcaacttcactagtgacccctattgcattgagttctttctggtaaattgcaattttaggtccgtagaaatactcattgataaaaggcccatc 1507133  T
Q  101 agttggattca 111  Q
     ||||||||||    
T  1507132 ggttggattca 1507122  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2 (Bit Score: 55; Significance: 2e-22; HSPs: 2)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 55; E-Value: 2e-22
Query Start/End: Original strand, 141 - 390
Target Start/End: Original strand, 28024602 - 28024854
Alignment:
Q  141 tcggatgcatcccagaaaagaaaacacacttttaggcttaatagtggagggttttgaaggaaattttagacattcggacgcaaacttcactccatctttc 240  Q
    |||||||||| |||| |||||||||||||||| |||  |||| |||| ||| | ||||||||| || |||||||| | | ||||  ||||||||| |||     
T  28024602 tcggatgcattccagcaaagaaaacacactttcaggagtaatggtggtgggatctgaaggaaaattcagacattcaggcacaaatctcactccatgtttg 28024701  T
Q  241 aattgagtaacaacgccaaagctcttcagctctgccttgtactcatgcattctcataccacgt---ttcgtactgtaatcaatgaaagggagacaagtta 337  Q
     ||| ||||||||| |||  ||| ||||||||  |||||||  |||| |||  ||| |||      ||   |||||  |||||||||||||||||||| |    
T  28024702 tattcagtaacaacaccagtgcttttcagctcgtccttgtaaccatgtattgccatgccataaaaatttacactgtcgtcaatgaaagggagacaagtaa 28024801  T
Q  338 tagaagatattgattcccactccggaccatataaaatgcattctcttgggcac 390  Q
    | ||||||||  ||| |||||| ||||||||||||||||||||||||||||||    
T  28024802 ttgaagatataaatttccactcgggaccatataaaatgcattctcttgggcac 28024854  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #2
Raw Score: 39; E-Value: 0.0000000000006
Query Start/End: Original strand, 23 - 109
Target Start/End: Original strand, 28024389 - 28024475
Alignment:
Q  23 gacacctattgcattgagttctttctggaaagatgcaattttaggtccataccaattctcatcaataaaaggtccatcagttggatt 109  Q
    ||||||||||||||||| |||||||||||||||||| ||| |||| |||||  ||||  ||||||  ||||| ||||||||| ||||    
T  28024389 gacacctattgcattgaattctttctggaaagatgctattgtaggaccataaaaatttgcatcaacgaaaggcccatcagtttgatt 28024475  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]



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