View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF4091_low_21 (Length: 383)
Name: NF4091_low_21
Description: NF4091
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF4091_low_21 |
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Alignment Details
Target: chr3 (Bit Score: 280; Significance: 1e-157; HSPs: 6)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 280; E-Value: 1e-157
Query Start/End: Original strand, 22 - 373
Target Start/End: Original strand, 20386825 - 20387174
Alignment:
| Q |
22 |
ctttctattgaagaagcatggttttttgctttatacataacccagtgatgagatctcccgaaaattgatttgataccgaatgcaagatttataatcggtg |
121 |
Q |
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|||||| | |||||||||||||||| ||||||||||||||||||| |||||||||||||||||||||||||||||||| ||||| ||||||||||||||| |
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| T |
20386825 |
ctttctttcgaagaagcatggtttt-tgctttatacataacccagggatgagatctcccgaaaattgatttgataccgtatgcatgatttataatcggtg |
20386923 |
T |
|
| Q |
122 |
acgattcaagaatggatgatcccaatacacaacagattggtactagtttgttggtagatcggattgatttcttgttcggaactggattgtatctgtgatt |
221 |
Q |
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|||||||||||||||| ||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||| ||||||| |
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| T |
20386924 |
acgattcaagaatggaatatcccaatacacaacagattggtactagtttgttggttgatcggattgatttcttgttcggaactggattgtatttgtgatt |
20387023 |
T |
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| Q |
222 |
tgaaacgggtctctatgagggtatttctcttttatgatgctttactgaatataatttaaggttatgactactatatgtcacacctttggacaaagttttg |
321 |
Q |
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|||||||||||||| ||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||| |||||||||||| |
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| T |
20387024 |
tgaaacgggtctctctgagggtatttctcttttatgatgctttactgaatataatttagggttatgactactatatgtcacaccttt-gacaaagttttg |
20387122 |
T |
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| Q |
322 |
tttccttgctatctcgtgtcttgatgttcctaattttatgttctaatctgtg |
373 |
Q |
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||||||||||||||||||||||||| |||||| |||||||||||||| |||| |
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| T |
20387123 |
tttccttgctatctcgtgtcttgatattcctatttttatgttctaatttgtg |
20387174 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #2
Raw Score: 268; E-Value: 1e-149
Query Start/End: Original strand, 22 - 373
Target Start/End: Original strand, 20386057 - 20386406
Alignment:
| Q |
22 |
ctttctattgaagaagcatggttttttgctttatacataacccagtgatgagatctcccgaaaattgatttgataccgaatgcaagatttataatcggtg |
121 |
Q |
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| T |
20386057 |
ctttctattgaagaagcatggtttt-tgctttatacataacccagtgatgtgatctcccgaaaattgatttgatacagtatgcatgatttataatctgtg |
20386155 |
T |
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| Q |
122 |
acgattcaagaatggatgatcccaatacacaacagattggtactagtttgttggtagatcggattgatttcttgttcggaactggattgtatctgtgatt |
221 |
Q |
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| T |
20386156 |
atgattcaagaatggaatatcccaatacacaacagattggtactagtttgttggttgaccggattgatttcttgttcggaactggattgtatttgtgatt |
20386255 |
T |
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| Q |
222 |
tgaaacgggtctctatgagggtatttctcttttatgatgctttactgaatataatttaaggttatgactactatatgtcacacctttggacaaagttttg |
321 |
Q |
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|||||||||||||| |||||||||||||||||||||||||||||| |||||||||||| |||||||||||||||||||||||||||| |||||||||||| |
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| T |
20386256 |
tgaaacgggtctctttgagggtatttctcttttatgatgctttacagaatataatttagggttatgactactatatgtcacaccttt-gacaaagttttg |
20386354 |
T |
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| Q |
322 |
tttccttgctatctcgtgtcttgatgttcctaattttatgttctaatctgtg |
373 |
Q |
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||||||||||||||||||||||||| |||||| |||||||||||||| |||| |
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| T |
20386355 |
tttccttgctatctcgtgtcttgatattcctatttttatgttctaatttgtg |
20386406 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #3
Raw Score: 252; E-Value: 1e-140
Query Start/End: Original strand, 22 - 373
Target Start/End: Original strand, 20386441 - 20386790
Alignment:
| Q |
22 |
ctttctattgaagaagcatggttttttgctttatacataacccagtgatgagatctcccgaaaattgatttgataccgaatgcaagatttataatcggtg |
121 |
Q |
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|||||| | |||||||||||||||| ||||||||||||||||||| |||||||||||||||||||||||||||||| | ||||| ||||||||||| ||| |
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| T |
20386441 |
ctttctttcgaagaagcatggtttt-tgctttatacataacccagggatgagatctcccgaaaattgatttgatacagtatgcatgatttataatctgtg |
20386539 |
T |
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| Q |
122 |
acgattcaagaatggatgatcccaatacacaacagattggtactagtttgttggtagatcggattgatttcttgttcggaactggattgtatctgtgatt |
221 |
Q |
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| |||||||||||||| ||||||||||||||||||||||||||||||||||||| || ||||||||||||||||||||||||||||||||| ||||||| |
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| T |
20386540 |
atgattcaagaatggaatatcccaatacacaacagattggtactagtttgttggttgaccggattgatttcttgttcggaactggattgtatttgtgatt |
20386639 |
T |
|
| Q |
222 |
tgaaacgggtctctatgagggtatttctcttttatgatgctttactgaatataatttaaggttatgactactatatgtcacacctttggacaaagttttg |
321 |
Q |
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||||| |||||||| |||||||||||||||||||||||||||||| |||||||||||| ||||||||||||||||||||||| |||| |||||||||||| |
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| T |
20386640 |
tgaaatgggtctctctgagggtatttctcttttatgatgctttacagaatataatttagggttatgactactatatgtcacaacttt-gacaaagttttg |
20386738 |
T |
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| Q |
322 |
tttccttgctatctcgtgtcttgatgttcctaattttatgttctaatctgtg |
373 |
Q |
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||||||||||||||||||||||||| |||||| |||||||||||||| |||| |
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| T |
20386739 |
tttccttgctatctcgtgtcttgatattcctatttttatgttctaatttgtg |
20386790 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #4
Raw Score: 227; E-Value: 1e-125
Query Start/End: Original strand, 22 - 320
Target Start/End: Original strand, 20387209 - 20387504
Alignment:
| Q |
22 |
ctttctattgaagaagcatggttttttgctttatacataacccagtgatgagatctcccgaaaattgatttgataccgaatgcaagatttataatcggtg |
121 |
Q |
| |
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|||||| | ||||||||||||||||| | ||||||||||||||||||||||||||||||||||||||||||||||||| ||||| ||||||||||||||| |
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| T |
20387209 |
ctttctttcgaagaagcatggttttt-gttttatacataacccagtgatgagatctcccgaaaattgatttgataccgtatgcatgatttataatcggtg |
20387307 |
T |
|
| Q |
122 |
acgattcaagaatggatgatcccaatacacaacagattggtactagtttgttggtagatcggattgatttcttgttcggaactggattgtatctgtgatt |
221 |
Q |
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|||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||| |
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| T |
20387308 |
acgattcaagaatggaatatcccaatacacaacagattggtactagtttgttggtagatcggattgatttcttgttcggaactggattgtatatgtgatt |
20387407 |
T |
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| Q |
222 |
tgaaacgggtctctatgagggtatttctcttttatgatgctttactgaatataatttaaggttatgactactatatgtcacacctttggacaaagtttt |
320 |
Q |
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||||| |||||||| ||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||| |||||||| ||||||||| |||| |
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| T |
20387408 |
tgaaatgggtctctctgagggtatttctcttttatgatgctttactgaatataatttagggttatgactactata-gtcacacc-ttggacaaattttt |
20387504 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #5
Raw Score: 58; E-Value: 3e-24
Query Start/End: Original strand, 44 - 204
Target Start/End: Original strand, 20387671 - 20387839
Alignment:
| Q |
44 |
tttttgctttatacataacccagtgatgagatctcccgaaaattgatttgataccgaatgcaagatt---------tataatcggtgacgattcaagaat |
134 |
Q |
| |
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|||||||||| ||||||||||| | ||||||| |||| |||||||||| ||| ||| ||||| |||| |||||||||||||||||||||||| |
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| T |
20387671 |
tttttgctttttacataacccattaatgagatatcccaaaaattgattggatgccgtatgcatgatttatatgatttataatcggtgacgattcaagaat |
20387770 |
T |
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| Q |
135 |
ggatgatcccaatacacaacagattggtactagtttgttggtagatcggattgatttcttgttcggaact |
204 |
Q |
| |
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|||| |||||||||||||||| |||| |||| |||||||| | ||||||| |||||||||| |||||| |
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| T |
20387771 |
ggat-atcccaatacacaacaaattgatactcgtttgttgttttatcggataaatttcttgtttggaact |
20387839 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #6
Raw Score: 34; E-Value: 0.0000000005
Query Start/End: Original strand, 328 - 373
Target Start/End: Original strand, 20385985 - 20386030
Alignment:
| Q |
328 |
tgctatctcgtgtcttgatgttcctaattttatgttctaatctgtg |
373 |
Q |
| |
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||||||||| |||||||||||||||| |||||||||||||| |||| |
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| T |
20385985 |
tgctatctcatgtcttgatgttcctatttttatgttctaatttgtg |
20386030 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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