View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF4091_low_22 (Length: 381)
Name: NF4091_low_22
Description: NF4091
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF4091_low_22 |
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Alignment Details
Target: chr5 (Bit Score: 267; Significance: 1e-149; HSPs: 2)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 267; E-Value: 1e-149
Query Start/End: Original strand, 92 - 366
Target Start/End: Original strand, 41172399 - 41172673
Alignment:
| Q |
92 |
gaagcgggtggtggagtcgacctggttttggaaaagcaggacattcttcttaagggtgaaggcaagtatggcggcgaaaaacaaacaaatggaggataat |
191 |
Q |
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| T |
41172399 |
gaagcgggtggtggagtcgacctggttttggaaaagcaggacattcttcttaagggtgaaggcaagtatggcggcgaaaaacaaacaaatggaggataat |
41172498 |
T |
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| Q |
192 |
attgagaagatgacaatgggagagaaagcatgtgtgtttagaaaaagggtgaataggtaagtcgttggacccatggccataagcgtgcttatcttctgca |
291 |
Q |
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| T |
41172499 |
attgagaagatgacaatgggagagaaagcatgtgtgtttagaagaagggtgaataggtaagtcgttggacccatggccataagcgtgcttatcttctgca |
41172598 |
T |
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| Q |
292 |
tcctgtctaaagcataaatgtagtcttctggtggatagttgagaatcattgttacgttgaaacctataatgaaac |
366 |
Q |
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| T |
41172599 |
tcctgtctaaagcataaatgtagtcttctggtggatagttgagaaccattgttacgttgaaacctataatgaaac |
41172673 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #2
Raw Score: 95; E-Value: 2e-46
Query Start/End: Original strand, 1 - 95
Target Start/End: Original strand, 41172263 - 41172357
Alignment:
| Q |
1 |
taagaaagaaaatatcaatgagaatgagctgatacgtcttgagatggtgaagcaagaagaagggaatgaaatgataattcgcaaagaagaagaag |
95 |
Q |
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| T |
41172263 |
taagaaagaaaatatcaatgagaatgagctgatacgtcttgagatggtgaagcaagaagaagggaatgaaatgataattcgcaaagaagaagaag |
41172357 |
T |
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