View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF4091_low_23 (Length: 380)
Name: NF4091_low_23
Description: NF4091
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF4091_low_23 |
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| [»] chr6 (5 HSPs) |
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Alignment Details
Target: chr6 (Bit Score: 60; Significance: 2e-25; HSPs: 5)
Name: chr6
Description:
Target: chr6; HSP #1
Raw Score: 60; E-Value: 2e-25
Query Start/End: Original strand, 275 - 380
Target Start/End: Original strand, 14027895 - 14028006
Alignment:
| Q |
275 |
aacgtagaagacttta-gagtctttcatca-----aaaacaaaagaaatataatcaaccataattaatattcatatgattcttcgatttttccttggtaa |
368 |
Q |
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| T |
14027895 |
aacgtagaagactttaagagtctttcataaaaaacaaaacaaaagaaatataatcaaccataattaataattatatgattcgtcgatttttcctttgtaa |
14027994 |
T |
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| Q |
369 |
tatttttctttt |
380 |
Q |
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| T |
14027995 |
tctttttctttt |
14028006 |
T |
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Target: chr6; HSP #2
Raw Score: 44; E-Value: 6e-16
Query Start/End: Original strand, 265 - 312
Target Start/End: Original strand, 14113298 - 14113345
Alignment:
| Q |
265 |
gagtaaagataacgtagaagactttagagtctttcatcaaaaacaaaa |
312 |
Q |
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| T |
14113298 |
gagtaaagataacgtagaagactttagagtctttcataaaaaacaaaa |
14113345 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #3
Raw Score: 37; E-Value: 0.000000000009
Query Start/End: Original strand, 165 - 233
Target Start/End: Original strand, 14108345 - 14108413
Alignment:
| Q |
165 |
ctttcctcacctccttgctggcttagaaatggatcttttgcatgtctttatcgattctcatgttgatgt |
233 |
Q |
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| T |
14108345 |
ctttactcacctccttgatggcttagaagtgggtctttttactgcctttatcgattctcatgttgatgt |
14108413 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #4
Raw Score: 36; E-Value: 0.00000000003
Query Start/End: Original strand, 265 - 312
Target Start/End: Original strand, 14107138 - 14107185
Alignment:
| Q |
265 |
gagtaaagataacgtagaagactttagagtctttcatcaaaaacaaaa |
312 |
Q |
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| T |
14107138 |
gagtaaagataacgttgaagactttatagtctttcataaaaaacaaaa |
14107185 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #5
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 173 - 229
Target Start/End: Original strand, 14020162 - 14020218
Alignment:
| Q |
173 |
acctccttgctggcttagaaatggatcttttgcatgtctttatcgattctcatgttg |
229 |
Q |
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| T |
14020162 |
acctccttgctggcttagaagtgggtctcttggctgtctttgtcgattctcatgttg |
14020218 |
T |
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