View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF4091_low_25 (Length: 361)
Name: NF4091_low_25
Description: NF4091
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF4091_low_25 |
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Alignment Details
Target: chr4 (Bit Score: 247; Significance: 1e-137; HSPs: 1)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 247; E-Value: 1e-137
Query Start/End: Original strand, 25 - 354
Target Start/End: Original strand, 55544683 - 55545012
Alignment:
| Q |
25 |
ttaaacgagtgatacaaactagaatgaaagatgattagaatattttgatcttctttcattctaggaccaatataccaatttattcttattttctttctaa |
124 |
Q |
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| T |
55544683 |
ttaaacgagtgatacaaactagaatgaaagatgattagaatattttgatcttctttcattctagcaccaatataccaatttattcttattttctttctaa |
55544782 |
T |
|
| Q |
125 |
taacttcatacttttattttnnnnnnntataaggnnnnnnnnnnnnnncttgcggggctagagccctatttcacaacacacagacccacccccaggagaa |
224 |
Q |
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| T |
55544783 |
taacttcatacttttatttttaaaaaatataaggtttttttcttttttcttgcggggctagagccctatttcgcaacacacagacccactcccaggagaa |
55544882 |
T |
|
| Q |
225 |
agattgttgaaagtagcaccaacttaaacgatatataaaggaatgtaagtagtacaaatgacacaaaaggatgcggtgaactatcctcaaaacttctcta |
324 |
Q |
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|| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||| |
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| T |
55544883 |
agtttgttgaaagtagcaccaacttaaacgatatataaaggaatgtaagtagtacaaatgacacaaaaggatgtggtgaactatcctcaaaacttctcta |
55544982 |
T |
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| Q |
325 |
aaagaacacactaattgcaaacttcacctt |
354 |
Q |
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|||||||||||||||||||||||||||||| |
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| T |
55544983 |
aaagaacacactaattgcaaacttcacctt |
55545012 |
T |
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