View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF4091_low_28 (Length: 354)
Name: NF4091_low_28
Description: NF4091
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF4091_low_28 |
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Alignment Details
Target: chr7 (Bit Score: 319; Significance: 1e-180; HSPs: 1)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 319; E-Value: 1e-180
Query Start/End: Original strand, 19 - 345
Target Start/End: Complemental strand, 45891841 - 45891515
Alignment:
| Q |
19 |
aagatgcaactaattaataccttgaatataacttcgtcataggaaccaggtgaaatttgaagagctttataacctccatcattgaaggcccatgttcttg |
118 |
Q |
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| T |
45891841 |
aagatgcaactaattaataccttgaatataacttcgtcataggaaccaggtgaaatttgaagagctttataacctccatcattgaaggcccatgttcttg |
45891742 |
T |
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| Q |
119 |
ccaagtttaaaccattttgggaagcttcttgaaaagttgtagtaactttagacattgttgatgggtctgatgctacaatcattaaaaaatacgaattgaa |
218 |
Q |
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| T |
45891741 |
ccaagtttaaaccattttgggaagcttcttgaaaagttgtagtaactttagacattgttgatgggtctgatgctacaatcattaaaaaatacgaattgaa |
45891642 |
T |
|
| Q |
219 |
cccattcaagtacaaaggttttccgttcagaacaaaactagtttcctttcgttgaacgaaaccactttcataaagagttttattattgcctaagtgagtg |
318 |
Q |
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| T |
45891641 |
cccattcaagtacaaaggttttccgttcagaacaaaactagtttcctttcgttgaacgaaaccattttcgtaaagagttttattattgcctaagtgagtg |
45891542 |
T |
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| Q |
319 |
tgtgagttacgatgatgttgatgatga |
345 |
Q |
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| T |
45891541 |
tgtgagttacgatgatgttgatgatga |
45891515 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1 (Bit Score: 57; Significance: 9e-24; HSPs: 4)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 57; E-Value: 9e-24
Query Start/End: Original strand, 55 - 155
Target Start/End: Original strand, 38085969 - 38086069
Alignment:
| Q |
55 |
tcataggaaccaggtgaaatttgaagagctttataacctccatcattgaaggcccatgttcttgccaagtttaaaccattttgggaagcttcttgaaaag |
154 |
Q |
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| T |
38085969 |
tcataagaaccaggagagatttgaagagctttataacctccatcattgaaagcccatgttcttcctacatttaaaccatgttgagaagcttgttgaaaag |
38086068 |
T |
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| Q |
155 |
t |
155 |
Q |
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| T |
38086069 |
t |
38086069 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #2
Raw Score: 47; E-Value: 9e-18
Query Start/End: Original strand, 62 - 152
Target Start/End: Original strand, 38091556 - 38091646
Alignment:
| Q |
62 |
aaccaggtgaaatttgaagagctttataacctccatcattgaaggcccatgttcttgccaagtttaaaccattttgggaagcttcttgaaa |
152 |
Q |
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| T |
38091556 |
aaccaggagaaatttgaagggctttatagcctccatcattgaaagcccatgttcttcctacatttaaaccatgttgtgaagcttgttgaaa |
38091646 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #3
Raw Score: 47; E-Value: 9e-18
Query Start/End: Original strand, 55 - 153
Target Start/End: Original strand, 38156084 - 38156182
Alignment:
| Q |
55 |
tcataggaaccaggtgaaatttgaagagctttataacctccatcattgaaggcccatgttcttgccaagtttaaaccattttgggaagcttcttgaaaa |
153 |
Q |
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| T |
38156084 |
tcataagaaccaggagaaatttgaagaggtttagaatctccatcgttgaaagcccatgttcttcccacatttaaaccatgttgagaagcttgttgaaaa |
38156182 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #4
Raw Score: 43; E-Value: 0.000000000000002
Query Start/End: Original strand, 76 - 226
Target Start/End: Original strand, 38111810 - 38111960
Alignment:
| Q |
76 |
tgaagagctttataacctccatcattgaaggcccatgttcttgccaagtttaaaccattttgggaagcttcttgaaaagttgtagtaactttagacattg |
175 |
Q |
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| T |
38111810 |
tgaagagctttataacctccatcgttgcaagcccatgttcttcctacatttaaaccatgtcgagaagcttgttggaaatttgaagtgaccttagaacttg |
38111909 |
T |
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| Q |
176 |
ttgatgggtctgatgctacaatcattaaaaaatacgaattgaacccattca |
226 |
Q |
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| T |
38111910 |
tagatgggtcagatgccatgatcattaaccaataggaattgaatccattca |
38111960 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2 (Bit Score: 30; Significance: 0.0000001; HSPs: 1)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 63 - 116
Target Start/End: Original strand, 38521722 - 38521775
Alignment:
| Q |
63 |
accaggtgaaatttgaagagctttataacctccatcattgaaggcccatgttct |
116 |
Q |
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| T |
38521722 |
accaggtgaaatttgaagagcattataatgaccatcattgaaagcccaagttct |
38521775 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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