View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF4091_low_3 (Length: 563)
Name: NF4091_low_3
Description: NF4091
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF4091_low_3 |
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Alignment Details
Target: chr2 (Bit Score: 152; Significance: 3e-80; HSPs: 4)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 152; E-Value: 3e-80
Query Start/End: Original strand, 20 - 214
Target Start/End: Original strand, 5569317 - 5569512
Alignment:
| Q |
20 |
tggtcaaatatagaataaagatagagtctgcagtgaacataaaaagagtcacaatcatcact-aaaagacaattttgtaaggatggatgtgacttagtat |
118 |
Q |
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| T |
5569317 |
tggtcaaatatagaataaagatagagtctgcagtgaacataaaaagagtcacaatcatcacttaaaagacaattttgtaagaatgggtgtgactcagtat |
5569416 |
T |
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| Q |
119 |
aaaaatataatatggtattaaataatatttgtgtcacctacaatttagactcacgcaccaaactcgataatgttggtgtagacgggcggtgtattg |
214 |
Q |
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| T |
5569417 |
aaaaatataatatggtattaaataatatttgtgtcacctacaatttagattcacacatcaaactggataatgttggtgtagacggacggtatattg |
5569512 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #2
Raw Score: 108; E-Value: 6e-54
Query Start/End: Original strand, 401 - 547
Target Start/End: Original strand, 5569695 - 5569831
Alignment:
| Q |
401 |
caataattaacaaatgagcttgtaatggtgcctataattgttaccaattatgtcaatttccgttgccccattggtaactcttccggttgggccttcttga |
500 |
Q |
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| T |
5569695 |
caataattaacaaatgagcttgtaatggtgcctataattgttaccaattatgtcaatttccgttgccccattggtaaatcttccggttgggcctt----- |
5569789 |
T |
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| Q |
501 |
aagtcgacgccatacgggttgtaattagcttttgcagtggttggaag |
547 |
Q |
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| T |
5569790 |
-----gacgccatacgggttgtaattagcttttgcagtggttggaag |
5569831 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #3
Raw Score: 44; E-Value: 9e-16
Query Start/End: Original strand, 468 - 547
Target Start/End: Original strand, 5615932 - 5616011
Alignment:
| Q |
468 |
ccattggtaactcttccggttgggccttcttgaaagtcgacgccatacgggttgtaattagcttttgcagtggttggaag |
547 |
Q |
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| T |
5615932 |
ccattggtaaatcttcccgtcggaccttcttgaaagtcgacgccgtacggattgtaattagattttgcattggttcgaag |
5616011 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #4
Raw Score: 38; E-Value: 0.000000000003
Query Start/End: Original strand, 282 - 334
Target Start/End: Original strand, 5569575 - 5569628
Alignment:
| Q |
282 |
cattgcttatctttcatacttgtttt-ataagaatgagttagatccaatataat |
334 |
Q |
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| T |
5569575 |
cattgcttatttttcatacttatttttataagaatgagttagatccaatataat |
5569628 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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