View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF4091_low_30 (Length: 334)
Name: NF4091_low_30
Description: NF4091
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF4091_low_30 |
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Alignment Details
Target: chr8 (Bit Score: 256; Significance: 1e-142; HSPs: 2)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 256; E-Value: 1e-142
Query Start/End: Original strand, 18 - 300
Target Start/End: Original strand, 45305900 - 45306182
Alignment:
| Q |
18 |
gatttgttattgggagtagagaatgaaaaacgacgtgacgatgatgagggttatcatgagcctcatcactcatttattgttctcttttacgtctcgtgcc |
117 |
Q |
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| T |
45305900 |
gatttgttattgggagtagagaatgaaaaacgacgtgacgatgatgagggttatcatgagcctcatcactcatttattgttctcttttacgtctcgtgcc |
45305999 |
T |
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| Q |
118 |
tttcacactaattctcaatccgaactgctccctctttcacccttttctttgtctattttgctgtccaatctccatgcatgtacggttcaactcgaatact |
217 |
Q |
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||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||| ||||||||| |
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| T |
45306000 |
tttcacactaattctcaatccgaactgctccctctttcacccttttctttgtctattttgctgtccaatctccttgcatgtacggttcaagtcgaatact |
45306099 |
T |
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| Q |
218 |
tctttcttttttcacctctacgatccgataataccatataa-gtatcttctttctcaataaaatacatacatacagtattatat |
300 |
Q |
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| T |
45306100 |
tc-ttcttttttcacctctacgatctgataataccatataatgtatcttctttctcaataaaatacatacatacagtattatat |
45306182 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #2
Raw Score: 36; E-Value: 0.00000000003
Query Start/End: Original strand, 296 - 331
Target Start/End: Original strand, 45306221 - 45306256
Alignment:
| Q |
296 |
tatatgaacaaagaaaataattaaataatatatatt |
331 |
Q |
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| T |
45306221 |
tatatgaacaaagaaaataattaaataatatatatt |
45306256 |
T |
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