View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF4091_low_31 (Length: 327)
Name: NF4091_low_31
Description: NF4091
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF4091_low_31 |
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Alignment Details
Target: chr1 (Bit Score: 238; Significance: 1e-132; HSPs: 4)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 238; E-Value: 1e-132
Query Start/End: Original strand, 21 - 312
Target Start/End: Complemental strand, 26831705 - 26831415
Alignment:
| Q |
21 |
actcaattatcattttacagttgaacaagaagttggatcttcctcttacgccttctttggcttcaacggtaaaatccctaatctaatctcatcgcatggc |
120 |
Q |
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| T |
26831705 |
actcaattatcattttacagttgaacaagaagttggatcttcctcttacgccttctttggcttcaacggtaaaacccctaatctaatctcatcgcatggc |
26831606 |
T |
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| Q |
121 |
taaaacagtttcatccattttccttctaaattgtgattatagtcatagttatggttacgtacactgcaagctttgatactacaataatacaaacaaatgt |
220 |
Q |
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| T |
26831605 |
taaaacagtttcatccattttccttctgaattgtgattatagtcatagttatggttacatacgctgcaagctttgatactacgataatacaaacaaatgt |
26831506 |
T |
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| Q |
221 |
ggctgatatgcggccacaattatagctgtgatgtcgttgtagaaaccattaattaagatgnnnnnnnatataaattatgtgcatgacacagg |
312 |
Q |
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| T |
26831505 |
ggctgatatgcggccacaattatagctgtgatgtcattgtagaaaccattaattacgatg-ttttttatataaattatgtgcatgacacagg |
26831415 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #2
Raw Score: 43; E-Value: 0.000000000000002
Query Start/End: Original strand, 21 - 91
Target Start/End: Complemental strand, 26817955 - 26817885
Alignment:
| Q |
21 |
actcaattatcattttacagttgaacaagaagttggatcttcctcttacgccttctttggcttcaacggta |
91 |
Q |
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| T |
26817955 |
actcgattatcattttaaggtagaacaagaagtgggatcttccgcttacgccttctttggcttcaatggta |
26817885 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #3
Raw Score: 39; E-Value: 0.0000000000005
Query Start/End: Original strand, 26 - 92
Target Start/End: Complemental strand, 26785060 - 26784994
Alignment:
| Q |
26 |
attatcattttacagttgaacaagaagttggatcttcctcttacgccttctttggcttcaacggtaa |
92 |
Q |
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| T |
26785060 |
attatcattttacggttgaacaagaagtggggtcttctacttatgccttctttggcttcaatggtaa |
26784994 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #4
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 26 - 92
Target Start/End: Complemental strand, 26791263 - 26791197
Alignment:
| Q |
26 |
attatcattttacagttgaacaagaagttggatcttcctcttacgccttctttggcttcaacggtaa |
92 |
Q |
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|||| ||||||| || ||||||||||| || |||||| |||| ||||||||||||||||| ||||| |
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| T |
26791263 |
attaccattttaaggtggaacaagaagtagggtcttccacttatgccttctttggcttcaatggtaa |
26791197 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7 (Bit Score: 40; Significance: 0.0000000000001; HSPs: 1)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 40; E-Value: 0.0000000000001
Query Start/End: Original strand, 26 - 93
Target Start/End: Original strand, 41919522 - 41919589
Alignment:
| Q |
26 |
attatcattttacagttgaacaagaagttggatcttcctcttacgccttctttggcttcaacggtaaa |
93 |
Q |
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|||| |||||||| || ||||||||||| || |||||| |||| |||||||||||||||||||||||| |
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| T |
41919522 |
attaccattttactgtggaacaagaagtggggtcttccacttatgccttctttggcttcaacggtaaa |
41919589 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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