View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF4091_low_35 (Length: 311)
Name: NF4091_low_35
Description: NF4091
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF4091_low_35 |
 | |
|
Alignment Details
Target: chr4 (Bit Score: 220; Significance: 1e-121; HSPs: 4)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 220; E-Value: 1e-121
Query Start/End: Original strand, 25 - 295
Target Start/End: Complemental strand, 182862 - 182592
Alignment:
| Q |
25 |
ttagcacggcaaacatgaacaaaaacaatctgctacaacttagaaaggnnnnnnnnncgtcttttactaccttagtgaccctcctacgaaactcgtattt |
124 |
Q |
| |
|
|||||| |||||||||||||||||||||||||| |||||||||||||| ||||||||||||||||| ||||||||||||||||||||||||| |
|
|
| T |
182862 |
ttagcatggcaaacatgaacaaaaacaatctgccacaacttagaaaggaaaaaaaaacgtcttttactaccttaatgaccctcctacgaaactcgtattt |
182763 |
T |
|
| Q |
125 |
agcactcccatactgttgtatcaatgcttcacgaattggagcattacgacatgtttgccaggcacaaatcctgtccacctgcaatgttgcaagaaccatg |
224 |
Q |
| |
|
|||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
182762 |
agcactcccatactgttgcatcaatgcttcacgaattggagcattacgacatgtttgccaggcacaaatcctgtccacctgcaatgttgcaagaaccatg |
182663 |
T |
|
| Q |
225 |
tgacaaaactgagtaacctgaaagaacaaatataggaatttgaaagcagcgggtcataaaagtggaatagt |
295 |
Q |
| |
|
|||||||||||| |||||||||||||||||||| ||||||||||||||||||||||||||||||||||||| |
|
|
| T |
182662 |
tgacaaaactgaataacctgaaagaacaaatattggaatttgaaagcagcgggtcataaaagtggaatagt |
182592 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #2
Raw Score: 113; E-Value: 3e-57
Query Start/End: Original strand, 86 - 273
Target Start/End: Original strand, 593332 - 593520
Alignment:
| Q |
86 |
ttttactaccttagtgaccctcctacgaaactcgtatttagcactcccatactgttgtatcaatgcttcacgaattggagcattacgacatgtttgccag |
185 |
Q |
| |
|
||||||||||||| |||||||||||||||||| |||||||||||| ||||||| || |||||||||||||||||||||||||| ||||||||||||||| |
|
|
| T |
593332 |
ttttactaccttaacgaccctcctacgaaactcatatttagcactcgcatactgctgcatcaatgcttcacgaattggagcattgcgacatgtttgccag |
593431 |
T |
|
| Q |
186 |
gcacaaatcctgtccacctgcaatgttgcaagaaccatgtgacaaaactgagtaacct-gaaagaacaaatataggaatttgaaagcag |
273 |
Q |
| |
|
||||||||||| ||||||| ||||||||||| ||| ||||||||||||||||||| | ||||||||||||| ||| |||| |||||| |
|
|
| T |
593432 |
gcacaaatcctatccacctacaatgttgcaacaacagtgtgacaaaactgagtaacttataaagaacaaatattggattttgcaagcag |
593520 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #3
Raw Score: 34; E-Value: 0.0000000004
Query Start/End: Original strand, 25 - 70
Target Start/End: Original strand, 593274 - 593319
Alignment:
| Q |
25 |
ttagcacggcaaacatgaacaaaaacaatctgctacaacttagaaa |
70 |
Q |
| |
|
|||||||||| ||||||||||||||| |||||| |||||||||||| |
|
|
| T |
593274 |
ttagcacggcgaacatgaacaaaaactatctgccacaacttagaaa |
593319 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #4
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 144 - 232
Target Start/End: Original strand, 29220016 - 29220104
Alignment:
| Q |
144 |
atcaatgcttcacgaattggagcattacgacatgtttgccaggcacaaatcctgtccacctgcaatgttgcaagaaccatgtgacaaaa |
232 |
Q |
| |
|
|||| ||||| || ||||||||||||| ||||||||| |||| | |||| | ||||||||||| ||||||||||| |||||||||| |
|
|
| T |
29220016 |
atcactgctttacaaattggagcattaggacatgttttccagcgaggaatcatatccacctgcaaagttgcaagaacagtgtgacaaaa |
29220104 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1 (Bit Score: 47; Significance: 8e-18; HSPs: 2)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 47; E-Value: 8e-18
Query Start/End: Original strand, 149 - 243
Target Start/End: Complemental strand, 44605265 - 44605171
Alignment:
| Q |
149 |
tgcttcacgaattggagcattacgacatgtttgccaggcacaaatcctgtccacctgcaatgttgcaagaaccatgtgacaaaactgagtaacct |
243 |
Q |
| |
|
||||| ||||||||||||||| |||||||||| |||| || ||| |||||| |||| ||||||||||||||| |||||||||| |||| ||||| |
|
|
| T |
44605265 |
tgctttacgaattggagcattgcgacatgttttccagccataaagcctgtcaacctacaatgttgcaagaacagtgtgacaaaattgaggaacct |
44605171 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #2
Raw Score: 44; E-Value: 5e-16
Query Start/End: Original strand, 149 - 220
Target Start/End: Complemental strand, 44627036 - 44626965
Alignment:
| Q |
149 |
tgcttcacgaattggagcattacgacatgtttgccaggcacaaatcctgtccacctgcaatgttgcaagaac |
220 |
Q |
| |
|
||||| ||||||||||||||| |||||||||| |||| || ||| |||||| |||||||||||||||||||| |
|
|
| T |
44627036 |
tgctttacgaattggagcattgcgacatgttttccagccataaagcctgtcaacctgcaatgttgcaagaac |
44626965 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
© Oklahoma State University