View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF4091_low_37 (Length: 302)
Name: NF4091_low_37
Description: NF4091
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF4091_low_37 |
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Alignment Details
Target: chr6 (Bit Score: 273; Significance: 1e-152; HSPs: 1)
Name: chr6
Description:
Target: chr6; HSP #1
Raw Score: 273; E-Value: 1e-152
Query Start/End: Original strand, 6 - 286
Target Start/End: Original strand, 3217461 - 3217741
Alignment:
| Q |
6 |
agaagcaaaggcaaattataccaaatcatactttgcaagaaaataatctgaggtagtagaaaatcagattcatctttatacatagccttcatgagtggaa |
105 |
Q |
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|||| |||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
3217461 |
agaaacaaaagcaaattataccaaatcatactttgcaagaaaataatctgaggtagtagaaaatcagattcatctttatacatagccttcatgagtggaa |
3217560 |
T |
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| Q |
106 |
ttccaaggatcaaagtattaggaagtgttgataatgaaagaccagttataatccatttcaaacctcctctaatatcactaatcttaataataacaatcaa |
205 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
3217561 |
ttccaaggatcaaagtattaggaagtgttgataatgaaagaccagttataatccatttcaaacctcctctaatatcactaatcttaataataacaatcaa |
3217660 |
T |
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| Q |
206 |
gactaaaaatgcaagaaatttttgaacacaatctgcatatataagtttaagactcattttgtaaatgttatttgaagatat |
286 |
Q |
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||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
3217661 |
gactaaaaatgcaagaaatttttgaacacaatctgcatatataagtttaagactcattttgtaaatgttatttgaagatat |
3217741 |
T |
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Target: chr7 (Bit Score: 76; Significance: 4e-35; HSPs: 1)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 76; E-Value: 4e-35
Query Start/End: Original strand, 16 - 196
Target Start/End: Original strand, 2035734 - 2035911
Alignment:
| Q |
16 |
gcaaattataccaaatcatactttgcaagaaaataatctgaggtagta-gaaaatcagattcatctttatacatagccttcatgagtggaattccaagga |
114 |
Q |
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||||||| ||||||||||||||||||||||||| |||||||| || | || ||| || |||||| |||||||| || || | | |||||||||||| | |
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| T |
2035734 |
gcaaattgtaccaaatcatactttgcaagaaaacaatctgagctaacaagacaat-agcttcatccttatacattgcttttaacaatggaattccaagaa |
2035832 |
T |
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| Q |
115 |
tcaaagtattaggaagtgttgataatgaaagaccagttataatccatttcaaacctcctctaatatcactaatcttaataat |
196 |
Q |
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|||||||||||||||||||||||||||||| |||||||||||||||||||||||| ||| || |||||||||||||||| |
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| T |
2035833 |
tcaaagtattaggaagtgttgataatgaaaaaccagttataatccatttcaaaccacct---ttaccactaatcttaataat |
2035911 |
T |
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