View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF4091_low_43 (Length: 270)
Name: NF4091_low_43
Description: NF4091
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF4091_low_43 |
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Alignment Details
Target: chr7 (Bit Score: 220; Significance: 1e-121; HSPs: 2)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 220; E-Value: 1e-121
Query Start/End: Original strand, 28 - 259
Target Start/End: Complemental strand, 29727906 - 29727675
Alignment:
| Q |
28 |
tccttattatcaaagagaactccgaaaaccaacaggagtgtagataatgtgagaaacaccgaaacccagttgatttcaatttcagaagaataagtaacac |
127 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||| ||||||||||||||||||||||||||||| |
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| T |
29727906 |
tccttattatcaaagagaactccgaaaaccaacaggagtgtagataatatgagaaacaccgaaacccagtcgatttcaatttcagaagaataagtaacac |
29727807 |
T |
|
| Q |
128 |
gtacaaaatcatgatgatcaatgcctagtccttcttgtgctttctctaacttcctctcaaaagaatccacacttccaatcttaaaataatatttatattt |
227 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||| |
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| T |
29727806 |
gtacaaaatcatgatgatcaatgcctagtccttcttgtgctttctctaacttcctctcaaaagaatccacacttccaatcttaacataatatttatattt |
29727707 |
T |
|
| Q |
228 |
tgcaggaggatgggttcctacttcactttcat |
259 |
Q |
| |
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|||||||||||||||||||||||||||||||| |
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| T |
29727706 |
tgcaggaggatgggttcctacttcactttcat |
29727675 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #2
Raw Score: 39; E-Value: 0.0000000000004
Query Start/End: Original strand, 104 - 226
Target Start/End: Original strand, 38514640 - 38514762
Alignment:
| Q |
104 |
caatttcagaagaataagtaacacgtacaaaatcatgatgatcaatgcctagtccttcttgtgctttctctaacttcctctcaaaagaatccacacttcc |
203 |
Q |
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|||||||||||||||| |||||| ||||| |||||||||| |||||||| ||| || ||| ||| ||||||| ||| |||||||| | ||| | || |
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| T |
38514640 |
caatttcagaagaataggtaacaggtacataatcatgatggtcaatgcccagtgctatttgagctctctctaatttctcctcaaaagcaaagacattccc |
38514739 |
T |
|
| Q |
204 |
aatcttaaaataatatttatatt |
226 |
Q |
| |
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||| || |||||||||||||||| |
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| T |
38514740 |
aatattgaaataatatttatatt |
38514762 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1 (Bit Score: 121; Significance: 5e-62; HSPs: 1)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 121; E-Value: 5e-62
Query Start/End: Original strand, 28 - 230
Target Start/End: Complemental strand, 16837448 - 16837262
Alignment:
| Q |
28 |
tccttattatcaaagagaactccgaaaaccaacaggagtgtagataatgtgagaaacaccgaaacccagttgatttcaatttcagaagaataagtaacac |
127 |
Q |
| |
|
|||||||||| |||||||||||||||| |||||||||||||||||||| ||||||||||||||||||||| | ||||| |||||||||||||||| |
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| T |
16837448 |
tccttattatgaaagagaactccgaaagccaacaggagtgtagataatatgagaaacaccgaaacccagtcggtttca------gaagaataagtaacac |
16837355 |
T |
|
| Q |
128 |
gtacaaaatcatgatgatcaatgcctagtccttcttgtgctttctctaacttcctctcaaaagaatccacacttccaatcttaaaataatatttatattt |
227 |
Q |
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||||||||||||||||||||||||||||||||||||| | ||||||||||||||||||||||||||||||||||||||||||||||||||| |
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|
| T |
16837354 |
gtacaaaatcatgatgatcaatgcctagtccttcttg----------agcttcctctcaaaagaatccacacttccaatcttaaaataatatttatattt |
16837265 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6 (Bit Score: 84; Significance: 5e-40; HSPs: 1)
Name: chr6
Description:
Target: chr6; HSP #1
Raw Score: 84; E-Value: 5e-40
Query Start/End: Original strand, 107 - 230
Target Start/End: Original strand, 20478978 - 20479101
Alignment:
| Q |
107 |
tttcagaagaataagtaacacgtacaaaatcatgatgatcaatgcctagtccttcttgtgctttctctaacttcctctcaaaagaatccacacttccaat |
206 |
Q |
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|||| |||||||| ||||||||||||||||||||||| | |||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||| |
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| T |
20478978 |
tttcggaagaatacgtaacacgtacaaaatcatgatgttgaatgcctagtccttcttgtgctttctctaacttcctctcaaaagaatcaacacttccaat |
20479077 |
T |
|
| Q |
207 |
cttaaaataatatttatattttgc |
230 |
Q |
| |
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|| ||| |||||| |||| |||| |
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| T |
20479078 |
attgaaaaaatattcatatcttgc |
20479101 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4 (Bit Score: 41; Significance: 0.00000000000003; HSPs: 1)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 41; E-Value: 0.00000000000003
Query Start/End: Original strand, 106 - 206
Target Start/End: Complemental strand, 24003320 - 24003220
Alignment:
| Q |
106 |
atttcagaagaataagtaacacgtacaaaatcatgatgatcaatgcctagtccttcttgtgctttctctaacttcctctcaaaagaatccacacttccaa |
205 |
Q |
| |
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|||||||||||||| |||||| ||||||||| ||| |||| ||||||| ||||||| |||| |||||||||| ||||||||| || |||||||||| |
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| T |
24003320 |
atttcagaagaatatgtaacaggtacaaaattgtgagagtcaacgcctagtgcttcttgcgcttcctctaacttctcctcaaaagactcgacacttccaa |
24003221 |
T |
|
| Q |
206 |
t |
206 |
Q |
| |
|
| |
|
|
| T |
24003220 |
t |
24003220 |
T |
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