View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF4091_low_46 (Length: 259)
Name: NF4091_low_46
Description: NF4091
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF4091_low_46 |
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Alignment Details
Target: chr8 (Bit Score: 220; Significance: 1e-121; HSPs: 7)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 220; E-Value: 1e-121
Query Start/End: Original strand, 13 - 240
Target Start/End: Complemental strand, 6424418 - 6424191
Alignment:
| Q |
13 |
aatatggagataacaccagcaccataaccaaagaacaattggagccaaacttgggcgggatcactgtagaacaggtaatgacacaagatattaatgtttt |
112 |
Q |
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| T |
6424418 |
aatatggagataacaccagcaccataaccaaagaacaattggagccaaacttgggcgggatcactgtagaacaggtaatgacacaagatattaatgtttt |
6424319 |
T |
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| Q |
113 |
tctagagaaatggttcatttttattcaaatgatgtacggtgactaaattatattttgttgattaggctatccaaaaccacaaactgtacatccttgatca |
212 |
Q |
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| T |
6424318 |
tctagagaaatggttcatttttattcaaatgatgtacggtgactaaattatattttgttgattaggctatccaaaacaacaaattgtacatccttgatca |
6424219 |
T |
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| Q |
213 |
ctatgacatagtatatccatatttgagg |
240 |
Q |
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| T |
6424218 |
ctatgacatagtatatccatatttgagg |
6424191 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #2
Raw Score: 47; E-Value: 6e-18
Query Start/End: Original strand, 21 - 95
Target Start/End: Complemental strand, 6352690 - 6352616
Alignment:
| Q |
21 |
gataacaccagcaccataaccaaagaacaattggagccaaacttgggcgggatcactgtagaacaggtaatgaca |
95 |
Q |
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| T |
6352690 |
gataataccagcaccataaccaaagaaaacttggagccaaacatgggtggggtcaccgtagaacaggtaatgaca |
6352616 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #3
Raw Score: 41; E-Value: 0.00000000000002
Query Start/End: Original strand, 152 - 240
Target Start/End: Complemental strand, 6321577 - 6321489
Alignment:
| Q |
152 |
tgactaaattatattttgttgattaggctatccaaaaccacaaactgtacatccttgatcactatgacatagtatatccatatttgagg |
240 |
Q |
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| T |
6321577 |
tgactaaattatattttgttcaataggctatccaaaacaacaggctttacatacttgatcaccatgactcaatatatccatatctgagg |
6321489 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #4
Raw Score: 41; E-Value: 0.00000000000002
Query Start/End: Original strand, 152 - 240
Target Start/End: Complemental strand, 6332082 - 6331994
Alignment:
| Q |
152 |
tgactaaattatattttgttgattaggctatccaaaaccacaaactgtacatccttgatcactatgacatagtatatccatatttgagg |
240 |
Q |
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| T |
6332082 |
tgactaaattatatttttttgaataggctatccaaaacaacaggctttacatacttgatcaccatgacccaatatttccatatttgagg |
6331994 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #5
Raw Score: 37; E-Value: 0.000000000006
Query Start/End: Original strand, 22 - 90
Target Start/End: Complemental strand, 6363489 - 6363421
Alignment:
| Q |
22 |
ataacaccagcaccataaccaaagaacaattggagccaaacttgggcgggatcactgtagaacaggtaa |
90 |
Q |
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| T |
6363489 |
ataataccagcaccataaccaaagaacatttgcagccaaacatggttggggtcacggtagaacaggtaa |
6363421 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #6
Raw Score: 37; E-Value: 0.000000000006
Query Start/End: Original strand, 14 - 98
Target Start/End: Complemental strand, 7459496 - 7459412
Alignment:
| Q |
14 |
atatggagataacaccagcaccataaccaaagaacaattggagccaaacttgggcgggatcactgtagaacaggtaatgacacaa |
98 |
Q |
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| T |
7459496 |
atatggtgataataccagcacaataaccattgatcacttggagccaaacatgggaggggtcacagtagaacaggtaatgtcacaa |
7459412 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #7
Raw Score: 32; E-Value: 0.000000006
Query Start/End: Original strand, 15 - 62
Target Start/End: Complemental strand, 6370392 - 6370345
Alignment:
| Q |
15 |
tatggagataacaccagcaccataaccaaagaacaattggagccaaac |
62 |
Q |
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| T |
6370392 |
tatggtgataataccagcacaataaccaaagaacacttggagccaaac |
6370345 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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