View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF4091_low_52 (Length: 238)

Name: NF4091_low_52
Description: NF4091
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF4091_low_52
NF4091_low_52
[»] chr4 (2 HSPs)
chr4 (10-107)||(40012141-40012238)
chr4 (152-238)||(40012009-40012095)
[»] scaffold0245 (1 HSPs)
scaffold0245 (192-236)||(5659-5703)
[»] scaffold0229 (1 HSPs)
scaffold0229 (192-236)||(5989-6033)
[»] chr1 (2 HSPs)
chr1 (192-236)||(1279981-1280025)
chr1 (183-234)||(35120173-35120224)
[»] chr8 (1 HSPs)
chr8 (188-238)||(25487649-25487699)
[»] chr5 (1 HSPs)
chr5 (183-237)||(17358519-17358573)
[»] chr7 (2 HSPs)
chr7 (189-238)||(7465266-7465315)
chr7 (190-238)||(45429322-45429370)
[»] chr3 (1 HSPs)
chr3 (189-238)||(35970437-35970486)
[»] chr2 (2 HSPs)
chr2 (183-223)||(1465829-1465869)
chr2 (190-238)||(13056662-13056710)


Alignment Details
Target: chr4 (Bit Score: 94; Significance: 5e-46; HSPs: 2)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 94; E-Value: 5e-46
Query Start/End: Original strand, 10 - 107
Target Start/End: Complemental strand, 40012238 - 40012141
Alignment:
Q  10 catcatcaactgaccctccgtgaaagacaatccagacagcttcatcaacctcgaaaatttccaatccttagccccaatttccttatcacacaacctac 107  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||    
T  40012238 catcatcaactgaccctccgtgaaagacaatccagacagcttcatcaacctcgaaaatttccaatccttagccctaatttccttatcacacaacctac 40012141  T

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Target: chr4; HSP #2
Raw Score: 87; E-Value: 8e-42
Query Start/End: Original strand, 152 - 238
Target Start/End: Complemental strand, 40012095 - 40012009
Alignment:
Q  152 tcaatcaagtttaattttcgtaaactaacattgtaaaattattttacacatgcactcaatgatgtgtttccatgtcaattaatgaat 238  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  40012095 tcaatcaagtttaattttcgtaaactaacattgtaaaattattttacacatgcactcaatgatgtgtttccatgtcaattaatgaat 40012009  T

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Target: scaffold0245 (Bit Score: 33; Significance: 0.000000001; HSPs: 1)
Name: scaffold0245
Description:

Target: scaffold0245; HSP #1
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 192 - 236
Target Start/End: Original strand, 5659 - 5703
Alignment:
Q  192 attttacacatgcactcaatgatgtgtttccatgtcaattaatga 236  Q
    ||||||||||||||| |||||||||||| ||| ||||||||||||    
T  5659 attttacacatgcacccaatgatgtgttgccacgtcaattaatga 5703  T

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Target: scaffold0229 (Bit Score: 33; Significance: 0.000000001; HSPs: 1)
Name: scaffold0229
Description:

Target: scaffold0229; HSP #1
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 192 - 236
Target Start/End: Original strand, 5989 - 6033
Alignment:
Q  192 attttacacatgcactcaatgatgtgtttccatgtcaattaatga 236  Q
    ||||||||||||||| |||||||||||| ||| ||||||||||||    
T  5989 attttacacatgcacccaatgatgtgttgccacgtcaattaatga 6033  T

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Target: chr1 (Bit Score: 33; Significance: 0.000000001; HSPs: 2)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 192 - 236
Target Start/End: Original strand, 1279981 - 1280025
Alignment:
Q  192 attttacacatgcactcaatgatgtgtttccatgtcaattaatga 236  Q
    ||||||||||||||| |||||||||||| ||| ||||||||||||    
T  1279981 attttacacatgcacccaatgatgtgttgccacgtcaattaatga 1280025  T

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Target: chr1; HSP #2
Raw Score: 32; E-Value: 0.000000005
Query Start/End: Original strand, 183 - 234
Target Start/End: Complemental strand, 35120224 - 35120173
Alignment:
Q  183 tgtaaaattattttacacatgcactcaatgatgtgtttccatgtcaattaat 234  Q
    |||||| ||||||||||||||||  ||||||||| || ||||||||||||||    
T  35120224 tgtaaagttattttacacatgcatccaatgatgtattgccatgtcaattaat 35120173  T

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Target: chr8 (Bit Score: 31; Significance: 0.00000002; HSPs: 1)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 188 - 238
Target Start/End: Complemental strand, 25487699 - 25487649
Alignment:
Q  188 aattattttacacatgcactcaatgatgtgtttccatgtcaattaatgaat 238  Q
    |||||||||||||||  | ||||||||||||| ||| ||||||||||||||    
T  25487699 aattattttacacatatattcaatgatgtgttgccacgtcaattaatgaat 25487649  T

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Target: chr5 (Bit Score: 31; Significance: 0.00000002; HSPs: 1)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 183 - 237
Target Start/End: Original strand, 17358519 - 17358573
Alignment:
Q  183 tgtaaaattattttacacatgcactcaatgatgtgtttccatgtcaattaatgaa 237  Q
    |||||| ||||||||||||||||  | ||||||||| | ||||||||||||||||    
T  17358519 tgtaaagttattttacacatgcatactatgatgtgtcttcatgtcaattaatgaa 17358573  T

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Target: chr7 (Bit Score: 30; Significance: 0.00000008; HSPs: 2)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 189 - 238
Target Start/End: Original strand, 7465266 - 7465315
Alignment:
Q  189 attattttacacatgcactcaatgatgtgtttccatgtcaattaatgaat 238  Q
    ||||||||||||||| | ||||| ||||||||  ||||||||||||||||    
T  7465266 attattttacacatggattcaattatgtgtttttatgtcaattaatgaat 7465315  T

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Target: chr7; HSP #2
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 190 - 238
Target Start/End: Complemental strand, 45429370 - 45429322
Alignment:
Q  190 ttattttacacatgcactcaatgatgtgtttccatgtcaattaatgaat 238  Q
    ||||||||||||||||   |||||| |||| ||||||||||||||||||    
T  45429370 ttattttacacatgcatcaaatgatttgttgccatgtcaattaatgaat 45429322  T

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Target: chr3 (Bit Score: 30; Significance: 0.00000008; HSPs: 1)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 189 - 238
Target Start/End: Original strand, 35970437 - 35970486
Alignment:
Q  189 attattttacacatgcactcaatgatgtgtttccatgtcaattaatgaat 238  Q
    ||||||||||||||||| ||||| |||||||  || ||||||||||||||    
T  35970437 attattttacacatgcattcaatcatgtgttgtcacgtcaattaatgaat 35970486  T

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Target: chr2 (Bit Score: 29; Significance: 0.0000003; HSPs: 2)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 183 - 223
Target Start/End: Complemental strand, 1465869 - 1465829
Alignment:
Q  183 tgtaaaattattttacacatgcactcaatgatgtgtttcca 223  Q
    |||| ||||||||||||||||||  ||||||||||||||||    
T  1465869 tgtacaattattttacacatgcatccaatgatgtgtttcca 1465829  T

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Target: chr2; HSP #2
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 190 - 238
Target Start/End: Complemental strand, 13056710 - 13056662
Alignment:
Q  190 ttattttacacatgcactcaatgatgtgtttccatgtcaattaatgaat 238  Q
    |||||||||||||||| ||||||||||||| |||  ||||| |||||||    
T  13056710 ttattttacacatgcattcaatgatgtgttgccacatcaatgaatgaat 13056662  T

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