View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF4091_low_54 (Length: 227)
Name: NF4091_low_54
Description: NF4091
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF4091_low_54 |
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| [»] chr3 (3 HSPs) |
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Alignment Details
Target: chr3 (Bit Score: 195; Significance: 1e-106; HSPs: 3)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 195; E-Value: 1e-106
Query Start/End: Original strand, 1 - 227
Target Start/End: Complemental strand, 43181262 - 43181036
Alignment:
| Q |
1 |
aaacattaaagtaaaaagacaaactaaaccctttttataaattaaaatcacaattgaccttgtagattatcaaactagcttccgttcttacaattttgta |
100 |
Q |
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| T |
43181262 |
aaacattaaagtaaaaagacaaactaaaccctttttataaattaaaatcacaattgaccttgtagattatcaaactagcttccgttcttacaattttgta |
43181163 |
T |
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| Q |
101 |
aatgaagtnnnnnnnncataataaaactaagacaatacacgaccttcgcaagtacccataattaaaatgacaattcaaacatgtttaacaacttattttg |
200 |
Q |
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| T |
43181162 |
aatgaagtaaaaaaaacataataaaactaagacaatacacgaccttcggaagtacccataattaaaatgacaattcaaacatgtttaacaacttattttg |
43181063 |
T |
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| Q |
201 |
cgcacacttgcacacacatctatataa |
227 |
Q |
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| T |
43181062 |
cacacacttgcacacacatctatataa |
43181036 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #2
Raw Score: 40; E-Value: 0.00000000000008
Query Start/End: Original strand, 125 - 204
Target Start/End: Complemental strand, 43190465 - 43190386
Alignment:
| Q |
125 |
aactaagacaatacacgaccttcgcaagtacccataattaaaatgacaattcaaacatgtttaacaacttattttgcgca |
204 |
Q |
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| T |
43190465 |
aactaagacaatacaagaccctcggaagcacacataattaaaatgataatcaaaacttgcttaacaacttattttgcgca |
43190386 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #3
Raw Score: 34; E-Value: 0.0000000003
Query Start/End: Original strand, 29 - 106
Target Start/End: Complemental strand, 43195585 - 43195508
Alignment:
| Q |
29 |
ccctttttataaattaaaatcacaattgaccttgtagattatcaaactagcttccgttcttacaattttgtaaatgaa |
106 |
Q |
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| T |
43195585 |
ccctttttataaattaaaatcacaaacgtacttgtagatcatgaaaccaatctcctttcttacaattttgtaaatgaa |
43195508 |
T |
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