View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF4091_low_55 (Length: 212)
Name: NF4091_low_55
Description: NF4091
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF4091_low_55 |
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Alignment Details
Target: chr1 (Bit Score: 150; Significance: 2e-79; HSPs: 2)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 150; E-Value: 2e-79
Query Start/End: Original strand, 14 - 197
Target Start/End: Complemental strand, 38230207 - 38230027
Alignment:
| Q |
14 |
cagagatacgggagacaacgtcaggatacgagtacttaacatcattatacatttcaagtatttttggacttgtactttacctctctgacccaaaggtttc |
113 |
Q |
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| T |
38230207 |
cagagacacgggagacaacgtcatgatac---tacttaacatcattatacatttcaagtatttttggacttgtactttacctctctgacccaaaggtttc |
38230111 |
T |
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| Q |
114 |
gctgttttgaaatttaaatttgtttagcgagtatgatataatgaagttaactctcattattgctcaggttcttttcaatgtatt |
197 |
Q |
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| T |
38230110 |
gttgttttgaaatttaaatttgtttagcgagtatgatataatgaagttaattctcattattgctcacgttcttttcaatgtatt |
38230027 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #2
Raw Score: 52; E-Value: 5e-21
Query Start/End: Original strand, 59 - 178
Target Start/End: Original strand, 15625043 - 15625162
Alignment:
| Q |
59 |
tatacatttcaagtatttttggacttgtactttacctctctgacccaaaggtttcgctgttttgaaatttaaatttgtttagcgagtatgatataatgaa |
158 |
Q |
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| T |
15625043 |
tatacatttcatgtattgttggacatgtattttacctgtttgacccaaaagtttcactattttgggatataaatttgtttagtgagtatgatatagcgaa |
15625142 |
T |
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| Q |
159 |
gttaactctcattattgctc |
178 |
Q |
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| T |
15625143 |
gttaactcacattcttgctc |
15625162 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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