View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF4091_low_59 (Length: 201)

Name: NF4091_low_59
Description: NF4091
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF4091_low_59
NF4091_low_59
[»] chr5 (16 HSPs)
chr5 (70-183)||(6281905-6282018)
chr5 (69-179)||(6282816-6282925)
chr5 (1-65)||(12278980-12279044)
chr5 (8-65)||(31680350-31680407)
chr5 (5-65)||(17332675-17332735)
chr5 (1-65)||(31501836-31501900)
chr5 (1-67)||(37254622-37254688)
chr5 (1-67)||(26283438-26283504)
chr5 (1-65)||(13817960-13818024)
chr5 (1-67)||(36293741-36293807)
chr5 (1-67)||(39434677-39434743)
chr5 (1-46)||(1776496-1776541)
chr5 (1-65)||(10033910-10033974)
chr5 (1-65)||(36291354-36291418)
chr5 (18-65)||(26543902-26543949)
chr5 (1-65)||(202622-202686)
[»] chr2 (14 HSPs)
chr2 (1-65)||(44084723-44084787)
chr2 (1-65)||(8147334-8147398)
chr2 (1-65)||(45418566-45418630)
chr2 (1-67)||(6403924-6403990)
chr2 (1-67)||(42439967-42440033)
chr2 (1-45)||(41251754-41251798)
chr2 (1-48)||(32127261-32127308)
chr2 (1-67)||(35962696-35962762)
chr2 (1-65)||(770977-771046)
chr2 (1-65)||(8059453-8059517)
chr2 (4-67)||(17445162-17445225)
chr2 (18-65)||(34523223-34523270)
chr2 (9-67)||(2958228-2958286)
chr2 (9-50)||(26237955-26237996)
[»] chr4 (32 HSPs)
chr4 (1-67)||(43143704-43143770)
chr4 (1-65)||(30216862-30216926)
chr4 (1-65)||(6690355-6690419)
chr4 (7-67)||(7769309-7769369)
chr4 (1-65)||(10353004-10353068)
chr4 (1-65)||(50205197-50205261)
chr4 (1-67)||(13012169-13012235)
chr4 (1-67)||(20129291-20129357)
chr4 (1-59)||(30109945-30110003)
chr4 (1-67)||(47500754-47500820)
chr4 (11-65)||(49908782-49908836)
chr4 (1-65)||(3293016-3293080)
chr4 (1-65)||(26448036-26448100)
chr4 (11-65)||(5517494-5517548)
chr4 (1-67)||(26439399-26439465)
chr4 (1-67)||(34407404-34407470)
chr4 (1-67)||(42333896-42333962)
chr4 (1-67)||(43355885-43355951)
chr4 (12-65)||(6212029-6212082)
chr4 (12-65)||(17554979-17555032)
chr4 (1-65)||(29996103-29996167)
chr4 (1-48)||(36382465-36382512)
chr4 (1-67)||(25930689-25930755)
chr4 (1-65)||(28877370-28877434)
chr4 (1-65)||(45194159-45194223)
chr4 (1-34)||(17511354-17511387)
chr4 (1-34)||(40529029-40529062)
chr4 (11-64)||(50720476-50720529)
chr4 (5-65)||(13392994-13393054)
chr4 (5-65)||(13396133-13396193)
chr4 (1-65)||(30077751-30077814)
chr4 (1-65)||(48989311-48989375)
[»] chr7 (14 HSPs)
chr7 (1-67)||(34389176-34389242)
chr7 (1-65)||(33685547-33685611)
chr7 (5-65)||(8867855-8867915)
chr7 (1-65)||(37002264-37002328)
chr7 (1-67)||(5555468-5555534)
chr7 (1-48)||(8394125-8394172)
chr7 (1-48)||(36630816-36630863)
chr7 (1-67)||(3114216-3114282)
chr7 (1-47)||(14777227-14777273)
chr7 (16-65)||(7002708-7002757)
chr7 (16-65)||(7048579-7048628)
chr7 (5-65)||(26624728-26624789)
chr7 (8-65)||(43184595-43184652)
chr7 (1-30)||(36658199-36658228)
[»] chr3 (17 HSPs)
chr3 (5-67)||(6503693-6503755)
chr3 (1-67)||(11018332-11018398)
chr3 (1-65)||(45182964-45183028)
chr3 (1-65)||(6931014-6931078)
chr3 (1-65)||(45335858-45335922)
chr3 (1-48)||(34084242-34084289)
chr3 (1-67)||(27935159-27935225)
chr3 (1-65)||(19565621-19565685)
chr3 (5-65)||(33040936-33040996)
chr3 (11-65)||(6890981-6891035)
chr3 (1-67)||(39771771-39771837)
chr3 (1-47)||(6269546-6269592)
chr3 (1-47)||(22968564-22968610)
chr3 (9-65)||(5354692-5354748)
chr3 (9-65)||(35514249-35514305)
chr3 (1-48)||(19390146-19390193)
chr3 (1-64)||(22922141-22922204)
[»] chr8 (11 HSPs)
chr8 (1-67)||(34136945-34137011)
chr8 (1-65)||(2729316-2729380)
chr8 (5-65)||(23402091-23402151)
chr8 (1-61)||(36408538-36408598)
chr8 (1-67)||(4403989-4404055)
chr8 (1-47)||(39914516-39914562)
chr8 (1-50)||(16788145-16788194)
chr8 (1-48)||(15838286-15838333)
chr8 (1-65)||(3648914-3648978)
chr8 (1-61)||(10397160-10397220)
chr8 (1-65)||(29728506-29728570)
[»] chr1 (9 HSPs)
chr1 (1-67)||(35907533-35907599)
chr1 (1-67)||(26144236-26144302)
chr1 (1-65)||(41972395-41972458)
chr1 (12-65)||(44352614-44352667)
chr1 (11-65)||(31866960-31867014)
chr1 (1-48)||(32982176-32982223)
chr1 (1-67)||(7433426-7433492)
chr1 (1-65)||(3828967-3829031)
chr1 (1-33)||(42311061-42311093)
[»] chr6 (9 HSPs)
chr6 (1-62)||(31028484-31028545)
chr6 (1-65)||(28996713-28996777)
chr6 (1-67)||(398598-398664)
chr6 (1-65)||(29743266-29743330)
chr6 (1-64)||(24697937-24698000)
chr6 (12-65)||(13647000-13647053)
chr6 (1-48)||(18339106-18339153)
chr6 (1-67)||(34948878-34948944)
chr6 (12-65)||(34385519-34385572)
[»] scaffold0002 (1 HSPs)
scaffold0002 (1-67)||(480577-480643)
[»] scaffold2142 (1 HSPs)
scaffold2142 (1-67)||(503-569)
[»] scaffold0154 (1 HSPs)
scaffold0154 (3-65)||(31463-31525)
[»] scaffold0502 (1 HSPs)
scaffold0502 (1-48)||(5230-5277)
[»] scaffold0769 (1 HSPs)
scaffold0769 (18-65)||(1260-1307)
[»] scaffold0069 (1 HSPs)
scaffold0069 (1-67)||(17823-17889)


Alignment Details
Target: chr5 (Bit Score: 94; Significance: 4e-46; HSPs: 16)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 94; E-Value: 4e-46
Query Start/End: Original strand, 70 - 183
Target Start/End: Original strand, 6281905 - 6282018
Alignment:
Q  70 tgaaaagaatccttatataattgacgatagttaatagatattcattttttatttgttcaatggaagtcttttatagattgatattgttgttaaataaata 169  Q
    |||||||||||||||||||||||||||||| ||||||||||||||||||| ||||||||||||||||| ||||||||||||| | |||||||||||||||    
T  6281905 tgaaaagaatccttatataattgacgatagctaatagatattcattttttctttgttcaatggaagtcgtttatagattgatgtcgttgttaaataaata 6282004  T
Q  170 actcttcattgaaa 183  Q
    ||||||||||||||    
T  6282005 actcttcattgaaa 6282018  T

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Target: chr5; HSP #2
Raw Score: 91; E-Value: 3e-44
Query Start/End: Original strand, 69 - 179
Target Start/End: Original strand, 6282816 - 6282925
Alignment:
Q  69 atgaaaagaatccttatataattgacgatagttaatagatattcattttttatttgttcaatggaagtcttttatagattgatattgttgttaaataaat 168  Q
    ||||||||||||||||||||||||||||||| ||||||||||||||||||  ||||||||||||||||| ||||||||||||||||||||||||||||||    
T  6282816 atgaaaagaatccttatataattgacgatagctaatagatattcatttttc-tttgttcaatggaagtcgtttatagattgatattgttgttaaataaat 6282914  T
Q  169 aactcttcatt 179  Q
    |||||||||||    
T  6282915 aactcttcatt 6282925  T

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Target: chr5; HSP #3
Raw Score: 53; E-Value: 1e-21
Query Start/End: Original strand, 1 - 65
Target Start/End: Original strand, 12278980 - 12279044
Alignment:
Q  1 aatgtgcaaaaattatcgatcgagtccgggcgactgcccggggtcgccggacggtgaaaccgccc 65  Q
    |||||||||||||||||||||||||||||||||| ||||||| ||||||| ||||||||||||||    
T  12278980 aatgtgcaaaaattatcgatcgagtccgggcgaccgcccgggatcgccgggcggtgaaaccgccc 12279044  T

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Target: chr5; HSP #4
Raw Score: 46; E-Value: 2e-17
Query Start/End: Original strand, 8 - 65
Target Start/End: Complemental strand, 31680407 - 31680350
Alignment:
Q  8 aaaaattatcgatcgagtccgggcgactgcccggggtcgccggacggtgaaaccgccc 65  Q
    ||||||||||||||||| ||||||||| ||||||||||||||| ||||||||||||||    
T  31680407 aaaaattatcgatcgagcccgggcgaccgcccggggtcgccgggcggtgaaaccgccc 31680350  T

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Target: chr5; HSP #5
Raw Score: 45; E-Value: 8e-17
Query Start/End: Original strand, 5 - 65
Target Start/End: Original strand, 17332675 - 17332735
Alignment:
Q  5 tgcaaaaattatcgatcgagtccgggcgactgcccggggtcgccggacggtgaaaccgccc 65  Q
    |||||||||||||||||||| ||||||||  ||||||||||||||| ||||||||||||||    
T  17332675 tgcaaaaattatcgatcgagcccgggcgaacgcccggggtcgccgggcggtgaaaccgccc 17332735  T

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Target: chr5; HSP #6
Raw Score: 45; E-Value: 8e-17
Query Start/End: Original strand, 1 - 65
Target Start/End: Original strand, 31501836 - 31501900
Alignment:
Q  1 aatgtgcaaaaattatcgatcgagtccgggcgactgcccggggtcgccggacggtgaaaccgccc 65  Q
    |||||||||||||||||||||||| |||||| |  ||||||||||||||| ||||||||||||||    
T  31501836 aatgtgcaaaaattatcgatcgagcccgggcaatcgcccggggtcgccgggcggtgaaaccgccc 31501900  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #7
Raw Score: 43; E-Value: 0.000000000000001
Query Start/End: Original strand, 1 - 67
Target Start/End: Complemental strand, 37254688 - 37254622
Alignment:
Q  1 aatgtgcaaaaattatcgatcgagtccgggcgactgcccggggtcgccggacggtgaaaccgcccat 67  Q
    |||||||||||||||||||||||| | ||||||| ||| ||||||||||  ||||||||||||||||    
T  37254688 aatgtgcaaaaattatcgatcgagcctgggcgaccgcctggggtcgccgagcggtgaaaccgcccat 37254622  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #8
Raw Score: 39; E-Value: 0.0000000000003
Query Start/End: Original strand, 1 - 67
Target Start/End: Original strand, 26283438 - 26283504
Alignment:
Q  1 aatgtgcaaaaattatcgatcgagtccgggcgactgcccggggtcgccggacggtgaaaccgcccat 67  Q
    |||||||||||||||||||||||| ||||||||| ||||| ||||||   |||||| ||||||||||    
T  26283438 aatgtgcaaaaattatcgatcgagcccgggcgaccgcccgaggtcgctacacggtggaaccgcccat 26283504  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #9
Raw Score: 37; E-Value: 0.000000000004
Query Start/End: Original strand, 1 - 65
Target Start/End: Complemental strand, 13818024 - 13817960
Alignment:
Q  1 aatgtgcaaaaattatcgatcgagtccgggcgactgcccggggtcgccggacggtgaaaccgccc 65  Q
    |||||||||||||||||||||||| ||| ||||| |||||||||||||  |||||  ||||||||    
T  13818024 aatgtgcaaaaattatcgatcgagcccgagcgaccgcccggggtcgccatacggtagaaccgccc 13817960  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #10
Raw Score: 35; E-Value: 0.00000000007
Query Start/End: Original strand, 1 - 67
Target Start/End: Original strand, 36293741 - 36293807
Alignment:
Q  1 aatgtgcaaaaattatcgatcgagtccgggcgactgcccggggtcgccggacggtgaaaccgcccat 67  Q
    ||||| ||||||||||||||||||||||| |||| || ||||||||||  |||||  ||||||||||    
T  36293741 aatgtacaaaaattatcgatcgagtccggacgaccgctcggggtcgccacacggtagaaccgcccat 36293807  T

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Target: chr5; HSP #11
Raw Score: 35; E-Value: 0.00000000007
Query Start/End: Original strand, 1 - 67
Target Start/End: Complemental strand, 39434743 - 39434677
Alignment:
Q  1 aatgtgcaaaaattatcgatcgagtccgggcgactgcccggggtcgccggacggtgaaaccgcccat 67  Q
    |||||| ||||||||||||||||| ||||||||| |||| ||||||||  |||||  ||||||||||    
T  39434743 aatgtgaaaaaattatcgatcgagcccgggcgaccgcccagggtcgccacacggtagaaccgcccat 39434677  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #12
Raw Score: 34; E-Value: 0.0000000003
Query Start/End: Original strand, 1 - 46
Target Start/End: Original strand, 1776496 - 1776541
Alignment:
Q  1 aatgtgcaaaaattatcgatcgagtccgggcgactgcccggggtcg 46  Q
    ||||| |||||||||||||||||| ||||||||| |||||||||||    
T  1776496 aatgtacaaaaattatcgatcgagcccgggcgaccgcccggggtcg 1776541  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #13
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 1 - 65
Target Start/End: Complemental strand, 10033974 - 10033910
Alignment:
Q  1 aatgtgcaaaaattatcgatcgagtccgggcgactgcccggggtcgccggacggtgaaaccgccc 65  Q
    |||||||||||||||||||||||| ||||||||  | |||||||||||  |||||  ||||||||    
T  10033974 aatgtgcaaaaattatcgatcgagcccgggcgatcgtccggggtcgccatacggtagaaccgccc 10033910  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #14
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 1 - 65
Target Start/End: Complemental strand, 36291418 - 36291354
Alignment:
Q  1 aatgtgcaaaaattatcgatcgagtccgggcgactgcccggggtcgccggacggtgaaaccgccc 65  Q
    |||||||||||||||| ||||||  |||| |||| |||||| |||| ||| ||||||||||||||    
T  36291418 aatgtgcaaaaattattgatcgaacccggacgaccgcccggagtcggcgggcggtgaaaccgccc 36291354  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #15
Raw Score: 32; E-Value: 0.000000004
Query Start/End: Original strand, 18 - 65
Target Start/End: Original strand, 26543902 - 26543949
Alignment:
Q  18 gatcgagtccgggcgactgcccggggtcgccggacggtgaaaccgccc 65  Q
    ||||||| ||||||||| ||||||||||||||| |||| |||||||||    
T  26543902 gatcgagcccgggcgaccgcccggggtcgccgggcggtaaaaccgccc 26543949  T

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Target: chr5; HSP #16
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 1 - 65
Target Start/End: Complemental strand, 202686 - 202622
Alignment:
Q  1 aatgtgcaaaaattatcgatcgagtccgggcgactgcccggggtcgccggacggtgaaaccgccc 65  Q
    ||||| || ||||||||||||||| |||||||||  ||  |||||| ||| ||||||||||||||    
T  202686 aatgtacacaaattatcgatcgagcccgggcgaccacctagggtcgtcgggcggtgaaaccgccc 202622  T

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Target: chr2 (Bit Score: 57; Significance: 5e-24; HSPs: 14)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 57; E-Value: 5e-24
Query Start/End: Original strand, 1 - 65
Target Start/End: Original strand, 44084723 - 44084787
Alignment:
Q  1 aatgtgcaaaaattatcgatcgagtccgggcgactgcccggggtcgccggacggtgaaaccgccc 65  Q
    |||||||||||||||||||||||| ||||||||||||||||||||||||| ||||||||||||||    
T  44084723 aatgtgcaaaaattatcgatcgagcccgggcgactgcccggggtcgccgggcggtgaaaccgccc 44084787  T

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Target: chr2; HSP #2
Raw Score: 49; E-Value: 3e-19
Query Start/End: Original strand, 1 - 65
Target Start/End: Complemental strand, 8147398 - 8147334
Alignment:
Q  1 aatgtgcaaaaattatcgatcgagtccgggcgactgcccggggtcgccggacggtgaaaccgccc 65  Q
    |||||||||| ||||||||||||| ||||||||| ||||||||||||||| ||||||||||||||    
T  8147398 aatgtgcaaagattatcgatcgagcccgggcgaccgcccggggtcgccgggcggtgaaaccgccc 8147334  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #3
Raw Score: 49; E-Value: 3e-19
Query Start/End: Original strand, 1 - 65
Target Start/End: Complemental strand, 45418630 - 45418566
Alignment:
Q  1 aatgtgcaaaaattatcgatcgagtccgggcgactgcccggggtcgccggacggtgaaaccgccc 65  Q
    |||| ||||||||||||||||||| ||||||||| ||||||||||||||| ||||||||||||||    
T  45418630 aatgcgcaaaaattatcgatcgagcccgggcgaccgcccggggtcgccgggcggtgaaaccgccc 45418566  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #4
Raw Score: 43; E-Value: 0.000000000000001
Query Start/End: Original strand, 1 - 67
Target Start/End: Original strand, 6403924 - 6403990
Alignment:
Q  1 aatgtgcaaaaattatcgatcgagtccgggcgactgcccggggtcgccggacggtgaaaccgcccat 67  Q
    |||||||||||||||||||||||| ||||||||| ||||||||||||   |||||| ||||||||||    
T  6403924 aatgtgcaaaaattatcgatcgagcccgggcgaccgcccggggtcgctacacggtggaaccgcccat 6403990  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #5
Raw Score: 43; E-Value: 0.000000000000001
Query Start/End: Original strand, 1 - 67
Target Start/End: Complemental strand, 42440033 - 42439967
Alignment:
Q  1 aatgtgcaaaaattatcgatcgagtccgggcgactgcccggggtcgccggacggtgaaaccgcccat 67  Q
    |||||||||||||||||||||||| ||||||||| |||||||||||||  |||||  ||||||||||    
T  42440033 aatgtgcaaaaattatcgatcgagcccgggcgaccgcccggggtcgccatacggtagaaccgcccat 42439967  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #6
Raw Score: 37; E-Value: 0.000000000004
Query Start/End: Original strand, 1 - 45
Target Start/End: Original strand, 41251754 - 41251798
Alignment:
Q  1 aatgtgcaaaaattatcgatcgagtccgggcgactgcccggggtc 45  Q
    |||||||||||||||||||||||| ||||||||| ||||||||||    
T  41251754 aatgtgcaaaaattatcgatcgagcccgggcgaccgcccggggtc 41251798  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #7
Raw Score: 36; E-Value: 0.00000000002
Query Start/End: Original strand, 1 - 48
Target Start/End: Original strand, 32127261 - 32127308
Alignment:
Q  1 aatgtgcaaaaattatcgatcgagtccgggcgactgcccggggtcgcc 48  Q
    |||||||||||||||| ||||||| ||||||||| |||||||||||||    
T  32127261 aatgtgcaaaaattattgatcgagcccgggcgaccgcccggggtcgcc 32127308  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #8
Raw Score: 35; E-Value: 0.00000000007
Query Start/End: Original strand, 1 - 67
Target Start/End: Complemental strand, 35962762 - 35962696
Alignment:
Q  1 aatgtgcaaaaattatcgatcgagtccgggcgactgcccggggtcgccggacggtgaaaccgcccat 67  Q
    |||||||||||||||||||||||| |||| |||| ||| |||||||||  |||||  ||||||||||    
T  35962762 aatgtgcaaaaattatcgatcgagcccggacgaccgcctggggtcgccatacggtagaaccgcccat 35962696  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #9
Raw Score: 34; E-Value: 0.0000000003
Query Start/End: Original strand, 1 - 65
Target Start/End: Complemental strand, 771046 - 770977
Alignment:
Q  1 aatgtgcaaaaattatcgatcgagtccgggcgactgcccgg-----ggtcgccggacggtgaaaccgccc 65  Q
    ||||||||||| |||||||||||| ||||||||| ||||||     ||||||||| ||||||||||||||    
T  771046 aatgtgcaaaagttatcgatcgagcccgggcgaccgcccgggatccggtcgccgggcggtgaaaccgccc 770977  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #10
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 1 - 65
Target Start/End: Original strand, 8059453 - 8059517
Alignment:
Q  1 aatgtgcaaaaattatcgatcgagtccgggcgactgcccggggtcgccggacggtgaaaccgccc 65  Q
    |||||||||||||||||||| ||| | ||||||  | ||||||||| ||| ||||||||||||||    
T  8059453 aatgtgcaaaaattatcgattgagcctgggcgatcggccggggtcgtcgggcggtgaaaccgccc 8059517  T

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Target: chr2; HSP #11
Raw Score: 32; E-Value: 0.000000004
Query Start/End: Original strand, 4 - 67
Target Start/End: Original strand, 17445162 - 17445225
Alignment:
Q  4 gtgcaaaaattatcgatcgagtccgggcgactgcccggggtcgccggacggtgaaaccgcccat 67  Q
    |||||||||||||||||||||  |||||||| ||||| |||||||  |||||  ||||||||||    
T  17445162 gtgcaaaaattatcgatcgagctcgggcgaccgcccgaggtcgccacacggtagaaccgcccat 17445225  T

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Target: chr2; HSP #12
Raw Score: 32; E-Value: 0.000000004
Query Start/End: Original strand, 18 - 65
Target Start/End: Complemental strand, 34523270 - 34523223
Alignment:
Q  18 gatcgagtccgggcgactgcccggggtcgccggacggtgaaaccgccc 65  Q
    ||||||| ||||||||| ||||||||||||||| |||| |||||||||    
T  34523270 gatcgagcccgggcgaccgcccggggtcgccgggcggtaaaaccgccc 34523223  T

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Target: chr2; HSP #13
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 9 - 67
Target Start/End: Original strand, 2958228 - 2958286
Alignment:
Q  9 aaaattatcgatcgagtccgggcgactgcccggggtcgccggacggtgaaaccgcccat 67  Q
    |||||||||||||||| |||| |||| |||||||||||||  |||||  ||||||||||    
T  2958228 aaaattatcgatcgagcccggacgaccgcccggggtcgccatacggtagaaccgcccat 2958286  T

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Target: chr2; HSP #14
Raw Score: 30; E-Value: 0.00000007
Query Start/End: Original strand, 9 - 50
Target Start/End: Complemental strand, 26237996 - 26237955
Alignment:
Q  9 aaaattatcgatcgagtccgggcgactgcccggggtcgccgg 50  Q
    |||| ||||||||||| ||||||||| |||||||||||||||    
T  26237996 aaaaatatcgatcgagcccgggcgaccgcccggggtcgccgg 26237955  T

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Target: chr4 (Bit Score: 55; Significance: 8e-23; HSPs: 32)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 55; E-Value: 8e-23
Query Start/End: Original strand, 1 - 67
Target Start/End: Original strand, 43143704 - 43143770
Alignment:
Q  1 aatgtgcaaaaattatcgatcgagtccgggcgactgcccggggtcgccggacggtgaaaccgcccat 67  Q
    |||||||||||||||||||||||| ||||||||| ||||||||||| ||||||||||||||||||||    
T  43143704 aatgtgcaaaaattatcgatcgagcccgggcgaccgcccggggtcgtcggacggtgaaaccgcccat 43143770  T

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Target: chr4; HSP #2
Raw Score: 53; E-Value: 1e-21
Query Start/End: Original strand, 1 - 65
Target Start/End: Original strand, 30216862 - 30216926
Alignment:
Q  1 aatgtgcaaaaattatcgatcgagtccgggcgactgcccggggtcgccggacggtgaaaccgccc 65  Q
    |||||||||||||||||||||||| ||||||||| ||||||||||||||||||||||| ||||||    
T  30216862 aatgtgcaaaaattatcgatcgagcccgggcgaccgcccggggtcgccggacggtgaatccgccc 30216926  T

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Target: chr4; HSP #3
Raw Score: 49; E-Value: 3e-19
Query Start/End: Original strand, 1 - 65
Target Start/End: Original strand, 6690355 - 6690419
Alignment:
Q  1 aatgtgcaaaaattatcgatcgagtccgggcgactgcccggggtcgccggacggtgaaaccgccc 65  Q
    |||| ||||||||||||||||||| ||||||||| ||||||||||||||| ||||||||||||||    
T  6690355 aatgcgcaaaaattatcgatcgagcccgggcgaccgcccggggtcgccgggcggtgaaaccgccc 6690419  T

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Target: chr4; HSP #4
Raw Score: 49; E-Value: 3e-19
Query Start/End: Original strand, 7 - 67
Target Start/End: Complemental strand, 7769369 - 7769309
Alignment:
Q  7 caaaaattatcgatcgagtccgggcgactgcccggggtcgccggacggtgaaaccgcccat 67  Q
    |||||||||||||||||| ||||||||| ||| ||||||||||||||||||||||||||||    
T  7769369 caaaaattatcgatcgagcccgggcgaccgcctggggtcgccggacggtgaaaccgcccat 7769309  T

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Target: chr4; HSP #5
Raw Score: 49; E-Value: 3e-19
Query Start/End: Original strand, 1 - 65
Target Start/End: Original strand, 10353004 - 10353068
Alignment:
Q  1 aatgtgcaaaaattatcgatcgagtccgggcgactgcccggggtcgccggacggtgaaaccgccc 65  Q
    |||||||||||||||||||| ||| ||||||||| ||| ||||||||||||||||||||||||||    
T  10353004 aatgtgcaaaaattatcgattgagcccgggcgaccgccaggggtcgccggacggtgaaaccgccc 10353068  T

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Target: chr4; HSP #6
Raw Score: 49; E-Value: 3e-19
Query Start/End: Original strand, 1 - 65
Target Start/End: Original strand, 50205197 - 50205261
Alignment:
Q  1 aatgtgcaaaaattatcgatcgagtccgggcgactgcccggggtcgccggacggtgaaaccgccc 65  Q
    ||||||||||||||||||||||||  |||||||| ||||||| ||||||||||||||||||||||    
T  50205197 aatgtgcaaaaattatcgatcgagctcgggcgaccgcccgggatcgccggacggtgaaaccgccc 50205261  T

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Target: chr4; HSP #7
Raw Score: 43; E-Value: 0.000000000000001
Query Start/End: Original strand, 1 - 67
Target Start/End: Complemental strand, 13012235 - 13012169
Alignment:
Q  1 aatgtgcaaaaattatcgatcgagtccgggcgactgcccggggtcgccggacggtgaaaccgcccat 67  Q
    |||||||||||||||||||||||| ||||||||| ||||||||||||   |||||| ||||||||||    
T  13012235 aatgtgcaaaaattatcgatcgagcccgggcgaccgcccggggtcgctacacggtggaaccgcccat 13012169  T

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Target: chr4; HSP #8
Raw Score: 43; E-Value: 0.000000000000001
Query Start/End: Original strand, 1 - 67
Target Start/End: Complemental strand, 20129357 - 20129291
Alignment:
Q  1 aatgtgcaaaaattatcgatcgagtccgggcgactgcccggggtcgccggacggtgaaaccgcccat 67  Q
    |||||||||||||||||||||||| ||||||||| ||||||||||||   |||||| ||||||||||    
T  20129357 aatgtgcaaaaattatcgatcgagcccgggcgaccgcccggggtcgctacacggtggaaccgcccat 20129291  T

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Target: chr4; HSP #9
Raw Score: 43; E-Value: 0.000000000000001
Query Start/End: Original strand, 1 - 59
Target Start/End: Complemental strand, 30110003 - 30109945
Alignment:
Q  1 aatgtgcaaaaattatcgatcgagtccgggcgactgcccggggtcgccggacggtgaaa 59  Q
    |||||||||||||||||||||||||||||||||| | ||||||||| ||| ||||||||    
T  30110003 aatgtgcaaaaattatcgatcgagtccgggcgaccgtccggggtcgtcgggcggtgaaa 30109945  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #10
Raw Score: 43; E-Value: 0.000000000000001
Query Start/End: Original strand, 1 - 67
Target Start/End: Complemental strand, 47500820 - 47500754
Alignment:
Q  1 aatgtgcaaaaattatcgatcgagtccgggcgactgcccggggtcgccggacggtgaaaccgcccat 67  Q
    |||||||||||||||||||||||| ||||||||| ||||||||||||   |||||| ||||||||||    
T  47500820 aatgtgcaaaaattatcgatcgagcccgggcgaccgcccggggtcgctacacggtggaaccgcccat 47500754  T

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Target: chr4; HSP #11
Raw Score: 43; E-Value: 0.000000000000001
Query Start/End: Original strand, 11 - 65
Target Start/End: Original strand, 49908782 - 49908836
Alignment:
Q  11 aattatcgatcgagtccgggcgactgcccggggtcgccggacggtgaaaccgccc 65  Q
    |||||||||||||| ||||||||| ||||||||||||||| ||||||||||||||    
T  49908782 aattatcgatcgagcccgggcgaccgcccggggtcgccgggcggtgaaaccgccc 49908836  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #12
Raw Score: 41; E-Value: 0.00000000000002
Query Start/End: Original strand, 1 - 65
Target Start/End: Original strand, 3293016 - 3293080
Alignment:
Q  1 aatgtgcaaaaattatcgatcgagtccgggcgactgcccggggtcgccggacggtgaaaccgccc 65  Q
    |||| ||||||||||||||||||| ||||||||| |||||||||| | || ||||||||||||||    
T  3293016 aatgggcaaaaattatcgatcgagcccgggcgaccgcccggggtcactgggcggtgaaaccgccc 3293080  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #13
Raw Score: 41; E-Value: 0.00000000000002
Query Start/End: Original strand, 1 - 65
Target Start/End: Complemental strand, 26448100 - 26448036
Alignment:
Q  1 aatgtgcaaaaattatcgatcgagtccgggcgactgcccggggtcgccggacggtgaaaccgccc 65  Q
    ||||||||||||||||||||||||||||| |||  || ||| |||||||| ||||||||||||||    
T  26448100 aatgtgcaaaaattatcgatcgagtccggacgatcgcacggagtcgccgggcggtgaaaccgccc 26448036  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #14
Raw Score: 39; E-Value: 0.0000000000003
Query Start/End: Original strand, 11 - 65
Target Start/End: Original strand, 5517494 - 5517548
Alignment:
Q  11 aattatcgatcgagtccgggcgactgcccggggtcgccggacggtgaaaccgccc 65  Q
    |||||||||||||| || |||||| ||||||||||||||| ||||||||||||||    
T  5517494 aattatcgatcgagcccaggcgaccgcccggggtcgccgggcggtgaaaccgccc 5517548  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #15
Raw Score: 39; E-Value: 0.0000000000003
Query Start/End: Original strand, 1 - 67
Target Start/End: Original strand, 26439399 - 26439465
Alignment:
Q  1 aatgtgcaaaaattatcgatcgagtccgggcgactgcccggggtcgccggacggtgaaaccgcccat 67  Q
    ||||||||||||||||||| |||| ||||||||| ||||||||||||   |||||| ||||||||||    
T  26439399 aatgtgcaaaaattatcgaccgagcccgggcgaccgcccggggtcgctacacggtggaaccgcccat 26439465  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #16
Raw Score: 39; E-Value: 0.0000000000003
Query Start/End: Original strand, 1 - 67
Target Start/End: Original strand, 34407404 - 34407470
Alignment:
Q  1 aatgtgcaaaaattatcgatcgagtccgggcgactgcccggggtcgccggacggtgaaaccgcccat 67  Q
    ||||||||||||||||||| |||| ||||||||| ||||||||||||   |||||| ||||||||||    
T  34407404 aatgtgcaaaaattatcgaccgagcccgggcgaccgcccggggtcgctacacggtggaaccgcccat 34407470  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #17
Raw Score: 39; E-Value: 0.0000000000003
Query Start/End: Original strand, 1 - 67
Target Start/End: Original strand, 42333896 - 42333962
Alignment:
Q  1 aatgtgcaaaaattatcgatcgagtccgggcgactgcccggggtcgccggacggtgaaaccgcccat 67  Q
    |||||||||||||||||||| ||| |||| |||| ||||||| |||| |||||||||||||| ||||    
T  42333896 aatgtgcaaaaattatcgattgagcccggacgaccgcccgggatcgctggacggtgaaaccgtccat 42333962  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #18
Raw Score: 39; E-Value: 0.0000000000003
Query Start/End: Original strand, 1 - 67
Target Start/End: Complemental strand, 43355951 - 43355885
Alignment:
Q  1 aatgtgcaaaaattatcgatcgagtccgggcgactgcccggggtcgccggacggtgaaaccgcccat 67  Q
    ||||||||||||||||||| |||| ||||||||||||| ||||||||   |||||| ||||||||||    
T  43355951 aatgtgcaaaaattatcgaccgagcccgggcgactgcctggggtcgctacacggtggaaccgcccat 43355885  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #19
Raw Score: 38; E-Value: 0.000000000001
Query Start/End: Original strand, 12 - 65
Target Start/End: Original strand, 6212029 - 6212082
Alignment:
Q  12 attatcgatcgagtccgggcgactgcccggggtcgccggacggtgaaaccgccc 65  Q
    |||||||||||||  |||||||| ||||| ||||||||||||||||||||||||    
T  6212029 attatcgatcgagctcgggcgaccgcccgaggtcgccggacggtgaaaccgccc 6212082  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #20
Raw Score: 38; E-Value: 0.000000000001
Query Start/End: Original strand, 12 - 65
Target Start/End: Complemental strand, 17555032 - 17554979
Alignment:
Q  12 attatcgatcgagtccgggcgactgcccggggtcgccggacggtgaaaccgccc 65  Q
    ||||||||||||| |||||||||  |||||||||| ||||||||||||||||||    
T  17555032 attatcgatcgagcccgggcgaccacccggggtcgtcggacggtgaaaccgccc 17554979  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #21
Raw Score: 37; E-Value: 0.000000000004
Query Start/End: Original strand, 1 - 65
Target Start/End: Original strand, 29996103 - 29996167
Alignment:
Q  1 aatgtgcaaaaattatcgatcgagtccgggcgactgcccggggtcgccggacggtgaaaccgccc 65  Q
    ||||| ||||||||||||||||||||||| |||| | ||||| ||| ||| ||||||||||||||    
T  29996103 aatgtacaaaaattatcgatcgagtccggacgaccgtccgggatcgtcgggcggtgaaaccgccc 29996167  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #22
Raw Score: 36; E-Value: 0.00000000002
Query Start/End: Original strand, 1 - 48
Target Start/End: Original strand, 36382465 - 36382512
Alignment:
Q  1 aatgtgcaaaaattatcgatcgagtccgggcgactgcccggggtcgcc 48  Q
    |||||||||||||||| ||||||| ||||||||| |||||||||||||    
T  36382465 aatgtgcaaaaattatggatcgagcccgggcgaccgcccggggtcgcc 36382512  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #23
Raw Score: 35; E-Value: 0.00000000007
Query Start/End: Original strand, 1 - 67
Target Start/End: Complemental strand, 25930755 - 25930689
Alignment:
Q  1 aatgtgcaaaaattatcgatcgagtccgggcgactgcccggggtcgccggacggtgaaaccgcccat 67  Q
    |||||||||||||||| ||||||| ||||||||| |||| ||||||||  |||||  ||||||||||    
T  25930755 aatgtgcaaaaattatagatcgagcccgggcgaccgcccagggtcgccatacggtagaaccgcccat 25930689  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #24
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 1 - 65
Target Start/End: Original strand, 28877370 - 28877434
Alignment:
Q  1 aatgtgcaaaaattatcgatcgagtccgggcgactgcccggggtcgccggacggtgaaaccgccc 65  Q
    ||||||||||||||||||||| || ||  ||||| || |||||||  ||||||||||||||||||    
T  28877370 aatgtgcaaaaattatcgatctagcccaagcgaccgcacggggtcatcggacggtgaaaccgccc 28877434  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #25
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 1 - 65
Target Start/End: Complemental strand, 45194223 - 45194159
Alignment:
Q  1 aatgtgcaaaaattatcgatcgagtccgggcgactgcccggggtcgccggacggtgaaaccgccc 65  Q
    |||||||||||||||| |||||||||||||| |  ||| ||||||| ||| ||||||||| ||||    
T  45194223 aatgtgcaaaaattattgatcgagtccgggcaatcgcctggggtcgtcgggcggtgaaactgccc 45194159  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #26
Raw Score: 30; E-Value: 0.00000007
Query Start/End: Original strand, 1 - 34
Target Start/End: Original strand, 17511354 - 17511387
Alignment:
Q  1 aatgtgcaaaaattatcgatcgagtccgggcgac 34  Q
    |||||||||||||||||||||||||| |||||||    
T  17511354 aatgtgcaaaaattatcgatcgagtctgggcgac 17511387  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #27
Raw Score: 30; E-Value: 0.00000007
Query Start/End: Original strand, 1 - 34
Target Start/End: Complemental strand, 40529062 - 40529029
Alignment:
Q  1 aatgtgcaaaaattatcgatcgagtccgggcgac 34  Q
    ||||||||||||||||||||||||||||| ||||    
T  40529062 aatgtgcaaaaattatcgatcgagtccggacgac 40529029  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #28
Raw Score: 30; E-Value: 0.00000007
Query Start/End: Original strand, 11 - 64
Target Start/End: Original strand, 50720476 - 50720529
Alignment:
Q  11 aattatcgatcgagtccgggcgactgcccggggtcgccggacggtgaaaccgcc 64  Q
    |||||| ||| ||| ||||||||| ||||| ||||||||| |||||||||||||    
T  50720476 aattattgattgagcccgggcgaccgcccgaggtcgccgggcggtgaaaccgcc 50720529  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #29
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 5 - 65
Target Start/End: Original strand, 13392994 - 13393054
Alignment:
Q  5 tgcaaaaattatcgatcgagtccgggcgactgcccggggtcgccggacggtgaaaccgccc 65  Q
    ||||||| | |||||| ||| ||||||||| | |||||||||| || ||||||||||||||    
T  13392994 tgcaaaagtcatcgattgagcccgggcgaccgtccggggtcgctgggcggtgaaaccgccc 13393054  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #30
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 5 - 65
Target Start/End: Original strand, 13396133 - 13396193
Alignment:
Q  5 tgcaaaaattatcgatcgagtccgggcgactgcccggggtcgccggacggtgaaaccgccc 65  Q
    ||||||| | |||||| ||| ||||||||| | |||||||||| || ||||||||||||||    
T  13396133 tgcaaaagtcatcgattgagcccgggcgaccgtccggggtcgctgggcggtgaaaccgccc 13396193  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #31
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 1 - 65
Target Start/End: Original strand, 30077751 - 30077814
Alignment:
Q  1 aatgtgcaaaaattatcgatcgagtccgggcgactgcccggggtcgccggacggtgaaaccgccc 65  Q
    ||||||||||| |||||||| ||| | ||||||| ||||| ||||| ||| ||||||||||||||    
T  30077751 aatgtgcaaaatttatcgattgagcctgggcgaccgcccgaggtcg-cgggcggtgaaaccgccc 30077814  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #32
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 1 - 65
Target Start/End: Complemental strand, 48989375 - 48989311
Alignment:
Q  1 aatgtgcaaaaattatcgatcgagtccgggcgactgcccggggtcgccggacggtgaaaccgccc 65  Q
    |||||||||||||||||||||||  ||||  ||| |||||| |||| ||| ||||||||| ||||    
T  48989375 aatgtgcaaaaattatcgatcgaacccggttgaccgcccggagtcgtcgggcggtgaaactgccc 48989311  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7 (Bit Score: 51; Significance: 2e-20; HSPs: 14)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 51; E-Value: 2e-20
Query Start/End: Original strand, 1 - 67
Target Start/End: Original strand, 34389176 - 34389242
Alignment:
Q  1 aatgtgcaaaaattatcgatcgagtccgggcgactgcccggggtcgccggacggtgaaaccgcccat 67  Q
    |||||||||||||||||||||||| ||||||||| ||||||||||||||| |||||||| |||||||    
T  34389176 aatgtgcaaaaattatcgatcgagcccgggcgaccgcccggggtcgccgggcggtgaaatcgcccat 34389242  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #2
Raw Score: 49; E-Value: 3e-19
Query Start/End: Original strand, 1 - 65
Target Start/End: Complemental strand, 33685611 - 33685547
Alignment:
Q  1 aatgtgcaaaaattatcgatcgagtccgggcgactgcccggggtcgccggacggtgaaaccgccc 65  Q
    |||||||||||||||||||||||| ||| ||||||||| ||||||||||| ||||||||||||||    
T  33685611 aatgtgcaaaaattatcgatcgagcccgagcgactgcctggggtcgccgggcggtgaaaccgccc 33685547  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #3
Raw Score: 45; E-Value: 8e-17
Query Start/End: Original strand, 5 - 65
Target Start/End: Original strand, 8867855 - 8867915
Alignment:
Q  5 tgcaaaaattatcgatcgagtccgggcgactgcccggggtcgccggacggtgaaaccgccc 65  Q
    |||||||||||||||||||| ||||||||| ||||||||||||||| ||||||||| ||||    
T  8867855 tgcaaaaattatcgatcgagcccgggcgaccgcccggggtcgccgggcggtgaaactgccc 8867915  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #4
Raw Score: 45; E-Value: 8e-17
Query Start/End: Original strand, 1 - 65
Target Start/End: Original strand, 37002264 - 37002328
Alignment:
Q  1 aatgtgcaaaaattatcgatcgagtccgggcgactgcccggggtcgccggacggtgaaaccgccc 65  Q
    |||||||||||||||||||||||| |||  |||| ||||||||||||||| ||||||||||||||    
T  37002264 aatgtgcaaaaattatcgatcgagaccgaacgaccgcccggggtcgccgggcggtgaaaccgccc 37002328  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #5
Raw Score: 43; E-Value: 0.000000000000001
Query Start/End: Original strand, 1 - 67
Target Start/End: Complemental strand, 5555534 - 5555468
Alignment:
Q  1 aatgtgcaaaaattatcgatcgagtccgggcgactgcccggggtcgccggacggtgaaaccgcccat 67  Q
    |||||||||||||||||||||||| ||||||||| |||||||||||||  |||||  ||||||||||    
T  5555534 aatgtgcaaaaattatcgatcgagcccgggcgaccgcccggggtcgccatacggtagaaccgcccat 5555468  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #6
Raw Score: 40; E-Value: 0.00000000000007
Query Start/End: Original strand, 1 - 48
Target Start/End: Complemental strand, 8394172 - 8394125
Alignment:
Q  1 aatgtgcaaaaattatcgatcgagtccgggcgactgcccggggtcgcc 48  Q
    |||||||||||||||||||||||| ||||||||| |||||||||||||    
T  8394172 aatgtgcaaaaattatcgatcgagcccgggcgaccgcccggggtcgcc 8394125  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #7
Raw Score: 36; E-Value: 0.00000000002
Query Start/End: Original strand, 1 - 48
Target Start/End: Complemental strand, 36630863 - 36630816
Alignment:
Q  1 aatgtgcaaaaattatcgatcgagtccgggcgactgcccggggtcgcc 48  Q
    |||||||||||||||||||||||| ||||||||| | |||||||||||    
T  36630863 aatgtgcaaaaattatcgatcgagcccgggcgaccgtccggggtcgcc 36630816  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #8
Raw Score: 35; E-Value: 0.00000000007
Query Start/End: Original strand, 1 - 67
Target Start/End: Original strand, 3114216 - 3114282
Alignment:
Q  1 aatgtgcaaaaattatcgatcgagtccgggcgactgcccggggtcgccggacggtgaaaccgcccat 67  Q
    |||||||||||||||||||||||| ||||||||| | |||||||| ||  |||||  ||||||||||    
T  3114216 aatgtgcaaaaattatcgatcgagcccgggcgaccgtccggggtcaccatacggtagaaccgcccat 3114282  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #9
Raw Score: 35; E-Value: 0.00000000007
Query Start/End: Original strand, 1 - 47
Target Start/End: Original strand, 14777227 - 14777273
Alignment:
Q  1 aatgtgcaaaaattatcgatcgagtccgggcgactgcccggggtcgc 47  Q
    |||||||||||||||||||||||| ||||||||| ||||||| ||||    
T  14777227 aatgtgcaaaaattatcgatcgagcccgggcgaccgcccgggatcgc 14777273  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #10
Raw Score: 34; E-Value: 0.0000000003
Query Start/End: Original strand, 16 - 65
Target Start/End: Complemental strand, 7002757 - 7002708
Alignment:
Q  16 tcgatcgagtccgggcgactgcccggggtcgccggacggtgaaaccgccc 65  Q
    ||||||||| ||||||||| || |||||||||||| ||||||||||||||    
T  7002757 tcgatcgagcccgggcgaccgctcggggtcgccgggcggtgaaaccgccc 7002708  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #11
Raw Score: 34; E-Value: 0.0000000003
Query Start/End: Original strand, 16 - 65
Target Start/End: Complemental strand, 7048628 - 7048579
Alignment:
Q  16 tcgatcgagtccgggcgactgcccggggtcgccggacggtgaaaccgccc 65  Q
    ||||||||| ||||||||| || |||||||||||| ||||||||||||||    
T  7048628 tcgatcgagcccgggcgaccgctcggggtcgccgggcggtgaaaccgccc 7048579  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #12
Raw Score: 34; E-Value: 0.0000000003
Query Start/End: Original strand, 5 - 65
Target Start/End: Complemental strand, 26624789 - 26624728
Alignment:
Q  5 tgcaaaaattatcga-tcgagtccgggcgactgcccggggtcgccggacggtgaaaccgccc 65  Q
    ||||||||||||||| ||||| || |||||| ||||||||| ||||| ||||||||||||||    
T  26624789 tgcaaaaattatcgaatcgagcccaggcgaccgcccggggttgccgggcggtgaaaccgccc 26624728  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #13
Raw Score: 34; E-Value: 0.0000000003
Query Start/End: Original strand, 8 - 65
Target Start/End: Original strand, 43184595 - 43184652
Alignment:
Q  8 aaaaattatcgatcgagtccgggcgactgcccggggtcgccggacggtgaaaccgccc 65  Q
    ||||||||||||||||| ||| ||||| ||||||  ||||||| ||||||||||||||    
T  43184595 aaaaattatcgatcgagcccgagcgaccgcccggaatcgccgggcggtgaaaccgccc 43184652  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #14
Raw Score: 30; E-Value: 0.00000007
Query Start/End: Original strand, 1 - 30
Target Start/End: Complemental strand, 36658228 - 36658199
Alignment:
Q  1 aatgtgcaaaaattatcgatcgagtccggg 30  Q
    ||||||||||||||||||||||||||||||    
T  36658228 aatgtgcaaaaattatcgatcgagtccggg 36658199  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3 (Bit Score: 51; Significance: 2e-20; HSPs: 17)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 51; E-Value: 2e-20
Query Start/End: Original strand, 5 - 67
Target Start/End: Original strand, 6503693 - 6503755
Alignment:
Q  5 tgcaaaaattatcgatcgagtccgggcgactgcccggggtcgccggacggtgaaaccgcccat 67  Q
    ||||||||| |||||||||| ||||||||| ||||||||||||||||||||||||||||||||    
T  6503693 tgcaaaaataatcgatcgagcccgggcgaccgcccggggtcgccggacggtgaaaccgcccat 6503755  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #2
Raw Score: 51; E-Value: 2e-20
Query Start/End: Original strand, 1 - 67
Target Start/End: Original strand, 11018332 - 11018398
Alignment:
Q  1 aatgtgcaaaaattatcgatcgagtccgggcgactgcccggggtcgccggacggtgaaaccgcccat 67  Q
    |||||||||||||||||||||||| | ||||||| |||||| |||||||||||||||||||||||||    
T  11018332 aatgtgcaaaaattatcgatcgagcctgggcgaccgcccggagtcgccggacggtgaaaccgcccat 11018398  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #3
Raw Score: 49; E-Value: 3e-19
Query Start/End: Original strand, 1 - 65
Target Start/End: Complemental strand, 45183028 - 45182964
Alignment:
Q  1 aatgtgcaaaaattatcgatcgagtccgggcgactgcccggggtcgccggacggtgaaaccgccc 65  Q
    |||| ||||||||||||||||||| ||||||||| ||||||||||||||| ||||||||||||||    
T  45183028 aatgcgcaaaaattatcgatcgagcccgggcgaccgcccggggtcgccgggcggtgaaaccgccc 45182964  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #4
Raw Score: 45; E-Value: 8e-17
Query Start/End: Original strand, 1 - 65
Target Start/End: Original strand, 6931014 - 6931078
Alignment:
Q  1 aatgtgcaaaaattatcgatcgagtccgggcgactgcccggggtcgccggacggtgaaaccgccc 65  Q
    |||| ||||||||||||||||||| ||||||||| | ||||||||||||| ||||||||||||||    
T  6931014 aatgcgcaaaaattatcgatcgagcccgggcgaccgtccggggtcgccgggcggtgaaaccgccc 6931078  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #5
Raw Score: 45; E-Value: 8e-17
Query Start/End: Original strand, 1 - 65
Target Start/End: Complemental strand, 45335922 - 45335858
Alignment:
Q  1 aatgtgcaaaaattatcgatcgagtccgggcgactgcccggggtcgccggacggtgaaaccgccc 65  Q
    |||||| ||||||||||||| ||||||||||||| ||||| ||||||||| ||||||||||||||    
T  45335922 aatgtgtaaaaattatcgattgagtccgggcgaccgcccgaggtcgccgggcggtgaaaccgccc 45335858  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #6
Raw Score: 44; E-Value: 3e-16
Query Start/End: Original strand, 1 - 48
Target Start/End: Original strand, 34084242 - 34084289
Alignment:
Q  1 aatgtgcaaaaattatcgatcgagtccgggcgactgcccggggtcgcc 48  Q
    |||||||||||||||||||||||||||||||||| |||||||||||||    
T  34084242 aatgtgcaaaaattatcgatcgagtccgggcgaccgcccggggtcgcc 34084289  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #7
Raw Score: 43; E-Value: 0.000000000000001
Query Start/End: Original strand, 1 - 67
Target Start/End: Complemental strand, 27935225 - 27935159
Alignment:
Q  1 aatgtgcaaaaattatcgatcgagtccgggcgactgcccggggtcgccggacggtgaaaccgcccat 67  Q
    |||||||||||||||||||||||| |||||||||||||| |||| ||| | |||||||||| |||||    
T  27935225 aatgtgcaaaaattatcgatcgagcccgggcgactgcccagggttgccaggcggtgaaaccacccat 27935159  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #8
Raw Score: 41; E-Value: 0.00000000000002
Query Start/End: Original strand, 1 - 65
Target Start/End: Original strand, 19565621 - 19565685
Alignment:
Q  1 aatgtgcaaaaattatcgatcgagtccgggcgactgcccggggtcgccggacggtgaaaccgccc 65  Q
    |||||||||||||||||||| ||  ||||||||| ||||||| ||||||| ||||||||||||||    
T  19565621 aatgtgcaaaaattatcgattgaacccgggcgaccgcccgggatcgccgggcggtgaaaccgccc 19565685  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #9
Raw Score: 41; E-Value: 0.00000000000002
Query Start/End: Original strand, 5 - 65
Target Start/End: Complemental strand, 33040996 - 33040936
Alignment:
Q  5 tgcaaaaattatcgatcgagtccgggcgactgcccggggtcgccggacggtgaaaccgccc 65  Q
    ||||||||||||| |||||| ||| ||||| ||||||||||||||| ||||||||||||||    
T  33040996 tgcaaaaattatcaatcgagcccgagcgaccgcccggggtcgccgggcggtgaaaccgccc 33040936  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #10
Raw Score: 39; E-Value: 0.0000000000003
Query Start/End: Original strand, 11 - 65
Target Start/End: Complemental strand, 6891035 - 6890981
Alignment:
Q  11 aattatcgatcgagtccgggcgactgcccggggtcgccggacggtgaaaccgccc 65  Q
    |||||||||||||| ||||||||| |||||| |||||||| ||||||||||||||    
T  6891035 aattatcgatcgagcccgggcgaccgcccggtgtcgccgggcggtgaaaccgccc 6890981  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #11
Raw Score: 39; E-Value: 0.0000000000003
Query Start/End: Original strand, 1 - 67
Target Start/End: Complemental strand, 39771837 - 39771771
Alignment:
Q  1 aatgtgcaaaaattatcgatcgagtccgggcgactgcccggggtcgccggacggtgaaaccgcccat 67  Q
    ||||||||||||||||||| |||| ||||||||| ||||||||||||   |||||| ||||||||||    
T  39771837 aatgtgcaaaaattatcgaccgagcccgggcgaccgcccggggtcgctacacggtggaaccgcccat 39771771  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #12
Raw Score: 35; E-Value: 0.00000000007
Query Start/End: Original strand, 1 - 47
Target Start/End: Original strand, 6269546 - 6269592
Alignment:
Q  1 aatgtgcaaaaattatcgatcgagtccgggcgactgcccggggtcgc 47  Q
    ||||||||||||||||||||||||||||| |||| ||||||| ||||    
T  6269546 aatgtgcaaaaattatcgatcgagtccggacgaccgcccgggatcgc 6269592  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #13
Raw Score: 35; E-Value: 0.00000000007
Query Start/End: Original strand, 1 - 47
Target Start/End: Original strand, 22968564 - 22968610
Alignment:
Q  1 aatgtgcaaaaattatcgatcgagtccgggcgactgcccggggtcgc 47  Q
    |||||||||||||||||||||||| |||| |||| ||||||||||||    
T  22968564 aatgtgcaaaaattatcgatcgagcccggacgaccgcccggggtcgc 22968610  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #14
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 9 - 65
Target Start/End: Complemental strand, 5354748 - 5354692
Alignment:
Q  9 aaaattatcgatcgagtccgggcgactgcccggggtcgccggacggtgaaaccgccc 65  Q
    |||||||  ||||||| ||||||||| ||||||||||||||| ||||||||| ||||    
T  5354748 aaaattaaggatcgagcccgggcgaccgcccggggtcgccgggcggtgaaactgccc 5354692  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #15
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 9 - 65
Target Start/End: Complemental strand, 35514305 - 35514249
Alignment:
Q  9 aaaattatcgatcgagtccgggcgactgcccggggtcgccggacggtgaaaccgccc 65  Q
    |||||||||||||||| |||| |||| | ||||||||||||| ||||||||| ||||    
T  35514305 aaaattatcgatcgagcccggacgaccgtccggggtcgccgggcggtgaaactgccc 35514249  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #16
Raw Score: 32; E-Value: 0.000000004
Query Start/End: Original strand, 1 - 48
Target Start/End: Complemental strand, 19390193 - 19390146
Alignment:
Q  1 aatgtgcaaaaattatcgatcgagtccgggcgactgcccggggtcgcc 48  Q
    |||||||||||||||||||||||  |||| |||| |||||||||||||    
T  19390193 aatgtgcaaaaattatcgatcgaacccggacgaccgcccggggtcgcc 19390146  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #17
Raw Score: 32; E-Value: 0.000000004
Query Start/End: Original strand, 1 - 64
Target Start/End: Complemental strand, 22922204 - 22922141
Alignment:
Q  1 aatgtgcaaaaattatcgatcgagtccgggcgactgcccggggtcgccggacggtgaaaccgcc 64  Q
    ||||||||||||| |||||||||| ||| ||||| ||||||| |||||  |||||| |||||||    
T  22922204 aatgtgcaaaaatgatcgatcgagcccgagcgaccgcccgggatcgccatacggtggaaccgcc 22922141  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8 (Bit Score: 47; Significance: 5e-18; HSPs: 11)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 47; E-Value: 5e-18
Query Start/End: Original strand, 1 - 67
Target Start/End: Original strand, 34136945 - 34137011
Alignment:
Q  1 aatgtgcaaaaattatcgatcgagtccgggcgactgcccggggtcgccggacggtgaaaccgcccat 67  Q
    |||||||||||||||||||||||| ||||||||| || |||||||||| |||||||||||| |||||    
T  34136945 aatgtgcaaaaattatcgatcgagcccgggcgaccgctcggggtcgccagacggtgaaaccacccat 34137011  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #2
Raw Score: 45; E-Value: 8e-17
Query Start/End: Original strand, 1 - 65
Target Start/End: Original strand, 2729316 - 2729380
Alignment:
Q  1 aatgtgcaaaaattatcgatcgagtccgggcgactgcccggggtcgccggacggtgaaaccgccc 65  Q
    |||||| ||||||||||||||||| ||||||| | ||||||||||||||| ||||||||||||||    
T  2729316 aatgtgtaaaaattatcgatcgagcccgggcgtccgcccggggtcgccgggcggtgaaaccgccc 2729380  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #3
Raw Score: 45; E-Value: 8e-17
Query Start/End: Original strand, 5 - 65
Target Start/End: Complemental strand, 23402151 - 23402091
Alignment:
Q  5 tgcaaaaattatcgatcgagtccgggcgactgcccggggtcgccggacggtgaaaccgccc 65  Q
    |||||| ||||||||||||| ||||||||| ||||||||||||||| ||||||||||||||    
T  23402151 tgcaaagattatcgatcgagcccgggcgaccgcccggggtcgccgggcggtgaaaccgccc 23402091  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #4
Raw Score: 45; E-Value: 8e-17
Query Start/End: Original strand, 1 - 61
Target Start/End: Complemental strand, 36408598 - 36408538
Alignment:
Q  1 aatgtgcaaaaattatcgatcgagtccgggcgactgcccggggtcgccggacggtgaaacc 61  Q
    |||||||||||||||||||||||| ||||||||| ||||| ||||||||| ||||||||||    
T  36408598 aatgtgcaaaaattatcgatcgagcccgggcgaccgcccgaggtcgccgggcggtgaaacc 36408538  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #5
Raw Score: 43; E-Value: 0.000000000000001
Query Start/End: Original strand, 1 - 67
Target Start/End: Complemental strand, 4404055 - 4403989
Alignment:
Q  1 aatgtgcaaaaattatcgatcgagtccgggcgactgcccggggtcgccggacggtgaaaccgcccat 67  Q
    |||||||||||||||||||||||| ||||||||| ||| ||||||||||| | ||||||||| ||||    
T  4404055 aatgtgcaaaaattatcgatcgagcccgggcgaccgcctggggtcgccggccagtgaaaccgtccat 4403989  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #6
Raw Score: 39; E-Value: 0.0000000000003
Query Start/End: Original strand, 1 - 47
Target Start/End: Complemental strand, 39914562 - 39914516
Alignment:
Q  1 aatgtgcaaaaattatcgatcgagtccgggcgactgcccggggtcgc 47  Q
    |||||||||||||||||||||||| ||||||||| ||||||||||||    
T  39914562 aatgtgcaaaaattatcgatcgagcccgggcgaccgcccggggtcgc 39914516  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #7
Raw Score: 38; E-Value: 0.000000000001
Query Start/End: Original strand, 1 - 50
Target Start/End: Original strand, 16788145 - 16788194
Alignment:
Q  1 aatgtgcaaaaattatcgatcgagtccgggcgactgcccggggtcgccgg 50  Q
    |||||||||||||||||||||||| ||||||||| ||||||||| |||||    
T  16788145 aatgtgcaaaaattatcgatcgagcccgggcgaccgcccggggttgccgg 16788194  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #8
Raw Score: 32; E-Value: 0.000000004
Query Start/End: Original strand, 1 - 48
Target Start/End: Complemental strand, 15838333 - 15838286
Alignment:
Q  1 aatgtgcaaaaattatcgatcgagtccgggcgactgcccggggtcgcc 48  Q
    ||||||||||||||||| |||||| ||||| ||| |||||||||||||    
T  15838333 aatgtgcaaaaattatcaatcgagcccgggtgaccgcccggggtcgcc 15838286  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #9
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 1 - 65
Target Start/End: Original strand, 3648914 - 3648978
Alignment:
Q  1 aatgtgcaaaaattatcgatcgagtccgggcgactgcccggggtcgccggacggtgaaaccgccc 65  Q
    |||||| ||||||||||||||||| ||||||||||| || || |||||  |||||  ||||||||    
T  3648914 aatgtgaaaaaattatcgatcgagcccgggcgactgtcccggatcgccatacggtagaaccgccc 3648978  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #10
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 1 - 61
Target Start/End: Original strand, 10397160 - 10397220
Alignment:
Q  1 aatgtgcaaaaattatcgatcgagtccgggcgactgcccggggtcgccggacggtgaaacc 61  Q
    |||||| | ||||||||||| ||| |||||||| ||||||| |||||||| ||||| ||||    
T  10397160 aatgtgaagaaattatcgattgagcccgggcgagtgcccggagtcgccgggcggtgtaacc 10397220  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #11
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 1 - 65
Target Start/End: Original strand, 29728506 - 29728570
Alignment:
Q  1 aatgtgcaaaaattatcgatcgagtccgggcgactgcccggggtcgccggacggtgaaaccgccc 65  Q
    ||||||||||| ||||||||||||  |||||||| | |||||||||||  |||||  ||||||||    
T  29728506 aatgtgcaaaatttatcgatcgagcacgggcgaccgtccggggtcgccatacggtagaaccgccc 29728570  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1 (Bit Score: 47; Significance: 5e-18; HSPs: 9)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 47; E-Value: 5e-18
Query Start/End: Original strand, 1 - 67
Target Start/End: Complemental strand, 35907599 - 35907533
Alignment:
Q  1 aatgtgcaaaaattatcgatcgagtccgggcgactgcccggggtcgccggacggtgaaaccgcccat 67  Q
    ||||||||||||||||||||| || ||||||||| ||||| ||||||||| ||||||||||||||||    
T  35907599 aatgtgcaaaaattatcgatcaagcccgggcgaccgcccgaggtcgccgggcggtgaaaccgcccat 35907533  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #2
Raw Score: 43; E-Value: 0.000000000000001
Query Start/End: Original strand, 1 - 67
Target Start/End: Complemental strand, 26144302 - 26144236
Alignment:
Q  1 aatgtgcaaaaattatcgatcgagtccgggcgactgcccggggtcgccggacggtgaaaccgcccat 67  Q
    |||||||||||||||||||||||| ||||||||| ||||||||||||   |||||| ||||||||||    
T  26144302 aatgtgcaaaaattatcgatcgagcccgggcgaccgcccggggtcgctacacggtggaaccgcccat 26144236  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #3
Raw Score: 41; E-Value: 0.00000000000002
Query Start/End: Original strand, 1 - 65
Target Start/End: Original strand, 41972395 - 41972458
Alignment:
Q  1 aatgtgcaaaaattatcgatcgagtccgggcgactgcccggggtcgccggacggtgaaaccgccc 65  Q
    |||||||||||||||||||||||| || |||||| |||||||||||| |||||||| ||||||||    
T  41972395 aatgtgcaaaaattatcgatcgag-ccaggcgaccgcccggggtcgctggacggtggaaccgccc 41972458  T

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Target: chr1; HSP #4
Raw Score: 38; E-Value: 0.000000000001
Query Start/End: Original strand, 12 - 65
Target Start/End: Original strand, 44352614 - 44352667
Alignment:
Q  12 attatcgatcgagtccgggcgactgcccggggtcgccggacggtgaaaccgccc 65  Q
    ||||||||||||| |||||||||  ||||||||||||||| |||||||||||||    
T  44352614 attatcgatcgagcccgggcgacctcccggggtcgccggatggtgaaaccgccc 44352667  T

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Target: chr1; HSP #5
Raw Score: 35; E-Value: 0.00000000007
Query Start/End: Original strand, 11 - 65
Target Start/End: Complemental strand, 31867014 - 31866960
Alignment:
Q  11 aattatcgatcgagtccgggcgactgcccggggtcgccggacggtgaaaccgccc 65  Q
    |||||||| ||||  ||||||||| ||||||||||||||| ||||||||||||||    
T  31867014 aattatcggtcgaacccgggcgaccgcccggggtcgccgggcggtgaaaccgccc 31866960  T

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Target: chr1; HSP #6
Raw Score: 32; E-Value: 0.000000004
Query Start/End: Original strand, 1 - 48
Target Start/End: Original strand, 32982176 - 32982223
Alignment:
Q  1 aatgtgcaaaaattatcgatcgagtccgggcgactgcccggggtcgcc 48  Q
    |||||||||||||||||||||| | ||| ||||| |||||||||||||    
T  32982176 aatgtgcaaaaattatcgatcgggcccgcgcgaccgcccggggtcgcc 32982223  T

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Target: chr1; HSP #7
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 1 - 67
Target Start/End: Complemental strand, 7433492 - 7433426
Alignment:
Q  1 aatgtgcaaaaattatcgatcgagtccgggcgactgcccggggtcgccggacggtgaaaccgcccat 67  Q
    |||||||||||||||| |||||||  |||||||| ||||||||| |||  |||||  ||||||||||    
T  7433492 aatgtgcaaaaattatagatcgagctcgggcgaccgcccggggttgccatacggtagaaccgcccat 7433426  T

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Target: chr1; HSP #8
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 1 - 65
Target Start/End: Complemental strand, 3829031 - 3828967
Alignment:
Q  1 aatgtgcaaaaattatcgatcgagtccgggcgactgcccggggtcgccggacggtgaaaccgccc 65  Q
    |||||||||||||||||||||||  ||| ||||| | ||||||| |||||  | |||||||||||    
T  3829031 aatgtgcaaaaattatcgatcgaacccgagcgaccgtccggggttgccgggtgatgaaaccgccc 3828967  T

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Target: chr1; HSP #9
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 1 - 33
Target Start/End: Original strand, 42311061 - 42311093
Alignment:
Q  1 aatgtgcaaaaattatcgatcgagtccgggcga 33  Q
    |||||||||||||||||||||||| ||||||||    
T  42311061 aatgtgcaaaaattatcgatcgagcccgggcga 42311093  T

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Target: chr6 (Bit Score: 46; Significance: 2e-17; HSPs: 9)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 46; E-Value: 2e-17
Query Start/End: Original strand, 1 - 62
Target Start/End: Original strand, 31028484 - 31028545
Alignment:
Q  1 aatgtgcaaaaattatcgatcgagtccgggcgactgcccggggtcgccggacggtgaaaccg 62  Q
    ||||||||||||||||||||||||||||||| || || |||||||||||| |||||||||||    
T  31028484 aatgtgcaaaaattatcgatcgagtccgggcaaccgctcggggtcgccgggcggtgaaaccg 31028545  T

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Target: chr6; HSP #2
Raw Score: 45; E-Value: 8e-17
Query Start/End: Original strand, 1 - 65
Target Start/End: Complemental strand, 28996777 - 28996713
Alignment:
Q  1 aatgtgcaaaaattatcgatcgagtccgggcgactgcccggggtcgccggacggtgaaaccgccc 65  Q
    |||| |||||||||||||||||||  |||||||| ||||||||||||||| ||||||||||||||    
T  28996777 aatgcgcaaaaattatcgatcgagctcgggcgaccgcccggggtcgccgggcggtgaaaccgccc 28996713  T

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Target: chr6; HSP #3
Raw Score: 43; E-Value: 0.000000000000001
Query Start/End: Original strand, 1 - 67
Target Start/End: Complemental strand, 398664 - 398598
Alignment:
Q  1 aatgtgcaaaaattatcgatcgagtccgggcgactgcccggggtcgccggacggtgaaaccgcccat 67  Q
    |||||||||||||||||||||||| ||||||||| ||||||||||||   |||||| ||||||||||    
T  398664 aatgtgcaaaaattatcgatcgagcccgggcgaccgcccggggtcgctacacggtggaaccgcccat 398598  T

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Target: chr6; HSP #4
Raw Score: 41; E-Value: 0.00000000000002
Query Start/End: Original strand, 1 - 65
Target Start/End: Complemental strand, 29743330 - 29743266
Alignment:
Q  1 aatgtgcaaaaattatcgatcgagtccgggcgactgcccggggtcgccggacggtgaaaccgccc 65  Q
    |||||||||||||||||||| ||| |||||| || ||||||| ||| ||||||||||||||||||    
T  29743330 aatgtgcaaaaattatcgattgagcccgggcaaccgcccgggatcgtcggacggtgaaaccgccc 29743266  T

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Target: chr6; HSP #5
Raw Score: 40; E-Value: 0.00000000000007
Query Start/End: Original strand, 1 - 64
Target Start/End: Original strand, 24697937 - 24698000
Alignment:
Q  1 aatgtgcaaaaattatcgatcgagtccgggcgactgcccggggtcgccggacggtgaaaccgcc 64  Q
    |||||| ||||||||||||| ||| |||||||| || ||||||||||||| |||||||||||||    
T  24697937 aatgtgaaaaaattatcgattgagcccgggcgagtgtccggggtcgccgggcggtgaaaccgcc 24698000  T

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Target: chr6; HSP #6
Raw Score: 38; E-Value: 0.000000000001
Query Start/End: Original strand, 12 - 65
Target Start/End: Complemental strand, 13647053 - 13647000
Alignment:
Q  12 attatcgatcgagtccgggcgactgcccggggtcgccggacggtgaaaccgccc 65  Q
    ||||||||||||| ||||||||| |||||||||||||||  |||||||||||||    
T  13647053 attatcgatcgagcccgggcgaccgcccggggtcgccgggtggtgaaaccgccc 13647000  T

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Target: chr6; HSP #7
Raw Score: 36; E-Value: 0.00000000002
Query Start/End: Original strand, 1 - 48
Target Start/End: Complemental strand, 18339153 - 18339106
Alignment:
Q  1 aatgtgcaaaaattatcgatcgagtccgggcgactgcccggggtcgcc 48  Q
    |||||||||||||||| ||||||| ||||||||| |||||||||||||    
T  18339153 aatgtgcaaaaattattgatcgagcccgggcgaccgcccggggtcgcc 18339106  T

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Target: chr6; HSP #8
Raw Score: 35; E-Value: 0.00000000007
Query Start/End: Original strand, 1 - 67
Target Start/End: Original strand, 34948878 - 34948944
Alignment:
Q  1 aatgtgcaaaaattatcgatcgagtccgggcgactgcccggggtcgccggacggtgaaaccgcccat 67  Q
    |||||||||||||||||||||||| | ||||||| ||| |||||||||  |||||  ||||||||||    
T  34948878 aatgtgcaaaaattatcgatcgagcctgggcgaccgcctggggtcgccatacggtagaaccgcccat 34948944  T

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Target: chr6; HSP #9
Raw Score: 34; E-Value: 0.0000000003
Query Start/End: Original strand, 12 - 65
Target Start/End: Original strand, 34385519 - 34385572
Alignment:
Q  12 attatcgatcgagtccgggcgactgcccggggtcgccggacggtgaaaccgccc 65  Q
    ||||||||||||| | |||| || ||||||||||||||| ||||||||||||||    
T  34385519 attatcgatcgagccagggcaaccgcccggggtcgccgggcggtgaaaccgccc 34385572  T

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Target: scaffold0002 (Bit Score: 43; Significance: 0.000000000000001; HSPs: 1)
Name: scaffold0002
Description:

Target: scaffold0002; HSP #1
Raw Score: 43; E-Value: 0.000000000000001
Query Start/End: Original strand, 1 - 67
Target Start/End: Original strand, 480577 - 480643
Alignment:
Q  1 aatgtgcaaaaattatcgatcgagtccgggcgactgcccggggtcgccggacggtgaaaccgcccat 67  Q
    |||||||||||||||||||||||| ||||||||| ||||||||||||   |||||| ||||||||||    
T  480577 aatgtgcaaaaattatcgatcgagcccgggcgaccgcccggggtcgctacacggtggaaccgcccat 480643  T

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Target: scaffold2142 (Bit Score: 39; Significance: 0.0000000000003; HSPs: 1)
Name: scaffold2142
Description:

Target: scaffold2142; HSP #1
Raw Score: 39; E-Value: 0.0000000000003
Query Start/End: Original strand, 1 - 67
Target Start/End: Complemental strand, 569 - 503
Alignment:
Q  1 aatgtgcaaaaattatcgatcgagtccgggcgactgcccggggtcgccggacggtgaaaccgcccat 67  Q
    |||||||||||||||||||||||| ||||||||| ||||||| ||||   |||||| ||||||||||    
T  569 aatgtgcaaaaattatcgatcgagcccgggcgaccgcccgggatcgctacacggtggaaccgcccat 503  T

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Target: scaffold0154 (Bit Score: 39; Significance: 0.0000000000003; HSPs: 1)
Name: scaffold0154
Description:

Target: scaffold0154; HSP #1
Raw Score: 39; E-Value: 0.0000000000003
Query Start/End: Original strand, 3 - 65
Target Start/End: Complemental strand, 31525 - 31463
Alignment:
Q  3 tgtgcaaaaattatcgatcgagtccgggcgactgcccggggtcgccggacggtgaaaccgccc 65  Q
    |||||||||||||||||||||| ||||||||| | | ||||||||||| || |||||||||||    
T  31525 tgtgcaaaaattatcgatcgagcccgggcgaccgtctggggtcgccgggcgatgaaaccgccc 31463  T

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Target: scaffold0502 (Bit Score: 36; Significance: 0.00000000002; HSPs: 1)
Name: scaffold0502
Description:

Target: scaffold0502; HSP #1
Raw Score: 36; E-Value: 0.00000000002
Query Start/End: Original strand, 1 - 48
Target Start/End: Complemental strand, 5277 - 5230
Alignment:
Q  1 aatgtgcaaaaattatcgatcgagtccgggcgactgcccggggtcgcc 48  Q
    |||||||||||||||| ||||||| ||||||||| |||||||||||||    
T  5277 aatgtgcaaaaattattgatcgagcccgggcgaccgcccggggtcgcc 5230  T

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Target: scaffold0769 (Bit Score: 32; Significance: 0.000000004; HSPs: 1)
Name: scaffold0769
Description:

Target: scaffold0769; HSP #1
Raw Score: 32; E-Value: 0.000000004
Query Start/End: Original strand, 18 - 65
Target Start/End: Complemental strand, 1307 - 1260
Alignment:
Q  18 gatcgagtccgggcgactgcccggggtcgccggacggtgaaaccgccc 65  Q
    ||||||| ||||||||| ||||||||||||||| |||| |||||||||    
T  1307 gatcgagcccgggcgaccgcccggggtcgccgggcggtaaaaccgccc 1260  T

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Target: scaffold0069 (Bit Score: 31; Significance: 0.00000002; HSPs: 1)
Name: scaffold0069
Description:

Target: scaffold0069; HSP #1
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 1 - 67
Target Start/End: Complemental strand, 17889 - 17823
Alignment:
Q  1 aatgtgcaaaaattatcgatcgagtccgggcgactgcccggggtcgccggacggtgaaaccgcccat 67  Q
    |||||||||||||||||||||||| |||| |||  || ||||||||||  |||||  ||||||||||    
T  17889 aatgtgcaaaaattatcgatcgagcccggacgatcgctcggggtcgccacacggtagaaccgcccat 17823  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]



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