View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF4091_low_6 (Length: 476)

Name: NF4091_low_6
Description: NF4091
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF4091_low_6
NF4091_low_6
[»] chr8 (18 HSPs)
chr8 (12-460)||(3325290-3325740)
chr8 (12-442)||(3374532-3374971)
chr8 (286-451)||(7164952-7165117)
chr8 (265-458)||(3407615-3407809)
chr8 (294-460)||(31175592-31175758)
chr8 (286-451)||(13808442-13808607)
chr8 (264-458)||(3286807-3286998)
chr8 (315-450)||(3398820-3398955)
chr8 (286-401)||(3267547-3267662)
chr8 (75-219)||(3287067-3287211)
chr8 (330-458)||(3363950-3364078)
chr8 (330-458)||(3391828-3391956)
chr8 (75-215)||(13786947-13787087)
chr8 (363-448)||(3262928-3263013)
chr8 (330-457)||(3314639-3314766)
chr8 (265-400)||(13787161-13787297)
chr8 (70-217)||(3407877-3408024)
chr8 (74-211)||(3267744-3267881)
[»] chr5 (5 HSPs)
chr5 (12-445)||(12599357-12599793)
chr5 (264-458)||(30417534-30417729)
chr5 (315-401)||(20812043-20812129)
chr5 (294-391)||(20838377-20838474)
chr5 (330-458)||(15802692-15802820)
[»] chr3 (2 HSPs)
chr3 (296-458)||(6906098-6906260)
chr3 (285-374)||(32411434-32411523)
[»] scaffold0468 (1 HSPs)
scaffold0468 (296-451)||(6445-6600)
[»] chr2 (2 HSPs)
chr2 (263-451)||(14767246-14767435)
chr2 (102-215)||(14767478-14767591)
[»] chr7 (1 HSPs)
chr7 (264-458)||(8371951-8372146)


Alignment Details
Target: chr8 (Bit Score: 399; Significance: 0; HSPs: 18)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 399; E-Value: 0
Query Start/End: Original strand, 12 - 460
Target Start/End: Complemental strand, 3325740 - 3325290
Alignment:
Q  12 gagatgaagaaactgggacttttgcaatttgatcattccgtcctgaccggaaattatcggtatctttcgaaagaactgagatggattcactggcaaggat 111  Q
    ||||||||||||||| ||||||||||| ||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  3325740 gagatgaagaaactgagacttttgcaacttgatcattgcgtcctgaccggaaattatcggtatctttcgaaagaactgagatggattcactggcaaggat 3325641  T
Q  112 ttacctttaattatatacccgacgacttttaccaggaaaatctagttgtaattgaggtaaaacacagcagtatcaaacaagtgtggaaggataccaaggt 211  Q
    |||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  3325640 ttacctttaactatatacccgacgacttttaccaggaaaatctagttgtaattgaggtaaaacacagcagtatcaaacaagtgtggaaggataccaaggt 3325541  T
Q  212 ataatatttatttcaaactcaaagtttgatgaaagtagtatttgttcccacctctctaatttttcctttgaaca-ttatctttttgcagttgttggataa 310  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||| |||||||||||||||||||||||||    
T  3325540 ataatatttatttcaaactcaaagtttgatgaaagtagtatttgttcccacctctctaatttttcttttgaacatttatctttttgcagttgttggataa 3325441  T
Q  311 actaaaaatactcaatgttagtcattctaggtacttgaaaaacacccctgatttt-tcaaaattaccgaatctagaaaagcttataatgaagaattgttc 409  Q
    ||||||||||||||||||||||||||||||||||||||||||| |||| | |||| ||||||||||||||||||||||||||||||||||||||||||||    
T  3325440 actaaaaatactcaatgttagtcattctaggtacttgaaaaacccccccgtttttatcaaaattaccgaatctagaaaagcttataatgaagaattgttc 3325341  T
Q  410 caatttgtccgaggtggaccagtccattggagatctcaagaaccttctttt 460  Q
    |||||||| ||||||||||||||||||||||||||||||||||||||||||    
T  3325340 caatttgttcgaggtggaccagtccattggagatctcaagaaccttctttt 3325290  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #2
Raw Score: 170; E-Value: 5e-91
Query Start/End: Original strand, 12 - 442
Target Start/End: Original strand, 3374532 - 3374971
Alignment:
Q  12 gagatgaagaaactgggacttttgcaatttgatcattccgtcctgaccggaaattatcggtatctttcgaaagaactgagatggattcactggcaaggat 111  Q
    |||||||||||||||  ||| || ||| |||||||| | ||||| || ||| | ||||  |||||||| |||||||||||||||||||| |||||| |||    
T  3374532 gagatgaagaaactgatactcttacaacttgatcatgcagtcctcacaggagactatcactatctttccaaagaactgagatggattcattggcaatgat 3374631  T
Q  112 ttacctttaattatatacccgacgacttttaccaggaaaatctagttgtaattgaggtaaaacacagcagtatcaaacaagtgtggaaggataccaaggt 211  Q
    ||||||| || ||||| ||||| |||||||| |||| |||||| ||||| || |  |||||| ||||||||||| || ||||||||||||| | ||||||    
T  3374632 ttaccttcaactatatgcccgatgacttttatcagggaaatctcgttgttatcgtcgtaaaatacagcagtatccaataagtgtggaaggaaaacaaggt 3374731  T
Q  212 ataa------tattta--tttcaaactcaaagtttgatgaaagtagtatttgttcccacctctctaatttttcctttgaacatt-atctttttgcagttg 302  Q
     | |      |||||   |||||||||||||| |||||| ||||||||||||||||||||||||||||||||| |||||||||| |||||  ||||||||    
T  3374732 ttcagtttcatattttcttttcaaactcaaaggttgatggaagtagtatttgttcccacctctctaatttttcttttgaacatttatcttcctgcagttg 3374831  T
Q  303 ttggataaactaaaaatactcaatgttagtcattctaggtacttgaaaaacacccctgatttttcaaaattaccgaatctagaaaagcttataatgaaga 402  Q
    |||||| |||||||||| |||||||| ||||||||||| |||||| |||||| ||||||||||||||||||||||||||||||||| ||||| |||||||    
T  3374832 ttggatgaactaaaaattctcaatgtcagtcattctagatacttggaaaacatccctgatttttcaaaattaccgaatctagaaaaacttattatgaaga 3374931  T
Q  403 attgttccaatttgtccgaggtggaccagtccattggaga 442  Q
    ||| | |   |||||  |||||  ||||||||||||||||    
T  3374932 attatccatgtttgtatgaggtacaccagtccattggaga 3374971  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #3
Raw Score: 86; E-Value: 6e-41
Query Start/End: Original strand, 286 - 451
Target Start/End: Complemental strand, 7165117 - 7164952
Alignment:
Q  286 ttatctttttgcagttgttggataaactaaaaatactcaatgttagtcattctaggtacttgaaaaacacccctgatttttcaaaattaccgaatctaga 385  Q
    ||||||| ||||||||  |||| || |||||||| || ||| | ||||||||||||||||||||| |||||||||| |||||||||||||| ||||||||    
T  7165117 ttatcttcttgcagtttctggagaagctaaaaattcttaatctcagtcattctaggtacttgaaacacacccctgacttttcaaaattaccaaatctaga 7165018  T
Q  386 aaagcttataatgaagaattgttccaatttgtccgaggtggaccagtccattggagatctcaagaa 451  Q
    ||||||||| |||||  ||||| | | ||||||||||||| | |||||||||||||||||||||||    
T  7165017 aaagcttattatgaaagattgtccaagtttgtccgaggtgcatcagtccattggagatctcaagaa 7164952  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #4
Raw Score: 67; E-Value: 1e-29
Query Start/End: Original strand, 265 - 458
Target Start/End: Complemental strand, 3407809 - 3407615
Alignment:
Q  265 ctctaatttttcctttgaaca-ttatctttttgcagttgttggataaactaaaaatactcaatgttagtcattctaggtacttgaaaaacacccctgatt 363  Q
    |||||| ||||||||| |||| |||| || |||||||||||| |||| |||||||| |||||| | |||||||| | | |||||||||  |||||||| |    
T  3407809 ctctaacttttcctttaaacaattattttcttgcagttgttgcataagctaaaaattctcaatctcagtcattccaagcacttgaaaagaacccctgact 3407710  T
Q  364 tttcaaaattaccgaatctagaaaagcttataatgaagaattgttccaatttgtccgaggtggaccagtccattggagatctcaagaaccttctt 458  Q
    ||||||||||||||||||||||||| || || |||||| |||||   | ||| |||||  |  ||| ||||||||||||||||||||| ||||||    
T  3407709 tttcaaaattaccgaatctagaaaaactcattatgaaggattgtcaaagtttatccgacatacacccgtccattggagatctcaagaatcttctt 3407615  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #5
Raw Score: 67; E-Value: 1e-29
Query Start/End: Original strand, 294 - 460
Target Start/End: Original strand, 31175592 - 31175758
Alignment:
Q  294 ttgcagttgttggataaactaaaaatactcaatgttagtcattctaggtacttgaaaaacacccctgatttttcaaaattaccgaatctagaaaagctta 393  Q
    |||||| |||| || || || ||||| |||||| | |||||||||| ||||||||||| ||| ||||| ||| |||||||||| |||||||||||||| |    
T  31175592 ttgcagctgttagacaagctgaaaattctcaatctcagtcattctaagtacttgaaaagcactcctgactttgcaaaattaccaaatctagaaaagctaa 31175691  T
Q  394 taatgaagaattgttccaatttgtccgaggtggaccagtccattggagatctcaagaaccttctttt 460  Q
    | |||||| |||||   | ||||||||||||| ||  ||||||||||||||||||||| ||||||||    
T  31175692 ttatgaaggattgtcaaagtttgtccgaggtgcacacgtccattggagatctcaagaatcttctttt 31175758  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #6
Raw Score: 54; E-Value: 8e-22
Query Start/End: Original strand, 286 - 451
Target Start/End: Original strand, 13808442 - 13808607
Alignment:
Q  286 ttatctttttgcagttgttggataaactaaaaatactcaatgttagtcattctaggtacttgaaaaacacccctgatttttcaaaattaccgaatctaga 385  Q
    ||||||||||||||||| || |||| || ||||| |||||| | |||||||| | | |||||| || |||||| || |||||||||||||| ||||||||    
T  13808442 ttatctttttgcagttgatgaataagctgaaaattctcaatctcagtcattccaagcacttgacaagcaccccagacttttcaaaattaccaaatctaga 13808541  T
Q  386 aaagcttataatgaagaattgttccaatttgtccgaggtggaccagtccattggagatctcaagaa 451  Q
    |||||| || |||||||| ||| | || |||||| || |  |||| || ||||| |||||||||||    
T  13808542 aaagctcattatgaagaactgtccaaacttgtccaagttacaccactcgattggggatctcaagaa 13808607  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #7
Raw Score: 53; E-Value: 3e-21
Query Start/End: Original strand, 264 - 458
Target Start/End: Complemental strand, 3286998 - 3286807
Alignment:
Q  264 tctctaatttttcctttgaacattatctttttgcagttgttggataaactaaaaatactcaatgttagtcattctaggtacttgaaaaacacccctgatt 363  Q
    ||||||||||||  ||||||   |||||| ||||||||| | |  || |||||||| |||||| | |||||||| || ||||||| || | |||| ||||    
T  3286998 tctctaatttttagtttgaa---tatcttcttgcagttgctagtgaatctaaaaattctcaatctaagtcattcgagatacttgacaagctccccggatt 3286902  T
Q  364 tttcaaaattaccgaatctagaaaagcttataatgaagaattgttccaatttgtccgaggtggaccagtccattggagatctcaagaaccttctt 458  Q
    ||||||||||||| ||||| |||||||| || |||||| ||||| | | |||||| |||||  |||  ||||||||||||||||| || ||||||    
T  3286901 tttcaaaattaccaaatcttgaaaagctcattatgaaggattgtccaagtttgtctgaggtacacccatccattggagatctcaataaacttctt 3286807  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #8
Raw Score: 52; E-Value: 1e-20
Query Start/End: Original strand, 315 - 450
Target Start/End: Complemental strand, 3398955 - 3398820
Alignment:
Q  315 aaaatactcaatgttagtcattctaggtacttgaaaaacacccctgatttttcaaaattaccgaatctagaaaagcttataatgaagaattgttccaatt 414  Q
    ||||| |||||||| ||||||  || ||||||||||| |||||| || ||||||||||||||||||||||||||||| || |||||| | ||| | |  |    
T  3398955 aaaattctcaatgtcagtcataataagtacttgaaaatcaccccagacttttcaaaattaccgaatctagaaaagctcattatgaaggactgtccgagct 3398856  T
Q  415 tgtccgaggtggaccagtccattggagatctcaaga 450  Q
    |||| |||||  ||||||||||||| || |||||||    
T  3398855 tgtctgaggtacaccagtccattggggacctcaaga 3398820  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #9
Raw Score: 48; E-Value: 3e-18
Query Start/End: Original strand, 286 - 401
Target Start/End: Complemental strand, 3267662 - 3267547
Alignment:
Q  286 ttatctttttgcagttgttggataaactaaaaatactcaatgttagtcattctaggtacttgaaaaacacccctgatttttcaaaattaccgaatctaga 385  Q
    ||||| ||||||||||| || | || || ||||| |||||| | |||||||| | |||||||| || ||| ||||| |||||||||||||||||||||||    
T  3267662 ttatcattttgcagttgatgaagaacctgaaaattctcaatctcagtcattccaagtacttgacaagcactcctgacttttcaaaattaccgaatctaga 3267563  T
Q  386 aaagcttataatgaag 401  Q
    |||||| || ||||||    
T  3267562 aaagctcattatgaag 3267547  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #10
Raw Score: 45; E-Value: 2e-16
Query Start/End: Original strand, 75 - 219
Target Start/End: Complemental strand, 3287211 - 3287067
Alignment:
Q  75 ctttcgaaagaactgagatggattcactggcaaggatttacctttaattatatacccgacgacttttaccaggaaaatctagttgtaattgaggtaaaac 174  Q
    ||||| |||||||| |||||| | || ||||||||||||||||| || | |||||| || |||||| | || | ||||||||||||  ||||  ||||||    
T  3287211 ctttctaaagaacttagatgggtccattggcaaggatttaccttcaactgtatacctgatgactttcatcaaggaaatctagttgtttttgaattaaaac 3287112  T
Q  175 acagcagtatcaaacaagtgtggaaggataccaaggtataatatt 219  Q
    ||||||  || |||||||| |||||  | ||||||||||||||||    
T  3287111 acagcaacattaaacaagtatggaataaaaccaaggtataatatt 3287067  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #11
Raw Score: 45; E-Value: 2e-16
Query Start/End: Original strand, 330 - 458
Target Start/End: Original strand, 3363950 - 3364078
Alignment:
Q  330 agtcattctaggtacttgaaaaacacccctgatttttcaaaattaccgaatctagaaaagcttataatgaagaattgttccaatttgtccgaggtggacc 429  Q
    |||||||||| | |||||||||  |||||||| |||||||||||||| || ||||||||||| || |||||| |||||   | ||||   |||||  |||    
T  3363950 agtcattctaagaacttgaaaagaacccctgacttttcaaaattaccaaacctagaaaagctaattatgaaggattgtcaaagtttgctggaggtacacc 3364049  T
Q  430 agtccattggagatctcaagaaccttctt 458  Q
     ||||||||||||||||||||| ||||||    
T  3364050 cgtccattggagatctcaagaatcttctt 3364078  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #12
Raw Score: 45; E-Value: 2e-16
Query Start/End: Original strand, 330 - 458
Target Start/End: Complemental strand, 3391956 - 3391828
Alignment:
Q  330 agtcattctaggtacttgaaaaacacccctgatttttcaaaattaccgaatctagaaaagcttataatgaagaattgttccaatttgtccgaggtggacc 429  Q
    |||||||||| |||||||||||  |||||||| |||||||| ||||| || ||||||||||| || |||||| |||||   | | |||  |||||  |||    
T  3391956 agtcattctaagtacttgaaaagaacccctgacttttcaaagttaccaaacctagaaaagctaattatgaaggattgtcaaagtctgttggaggtacacc 3391857  T
Q  430 agtccattggagatctcaagaaccttctt 458  Q
     ||||||||||||||||||||| ||||||    
T  3391856 cgtccattggagatctcaagaatcttctt 3391828  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #13
Raw Score: 41; E-Value: 0.00000000000005
Query Start/End: Original strand, 75 - 215
Target Start/End: Original strand, 13786947 - 13787087
Alignment:
Q  75 ctttcgaaagaactgagatggattcactggcaaggatttacctttaattatatacccgacgacttttaccaggaaaatctagttgtaattgaggtaaaac 174  Q
    ||||| ||||||||||| ||| | || ||| ||||||||||||| || |||||||| || |||||| | || | ||||||||||||  ||||  ||| ||    
T  13786947 ctttctaaagaactgaggtgggtccattggaaaggatttaccttcaactatatacctgatgactttcatcaaggaaatctagttgtttttgaattaacac 13787046  T
Q  175 acagcagtatcaaacaagtgtggaaggataccaaggtataa 215  Q
    |||||| ||| ||||| || ||||| || ||||||||||||    
T  13787047 acagcaatattaaacacgtatggaacgaaaccaaggtataa 13787087  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #14
Raw Score: 38; E-Value: 0.000000000003
Query Start/End: Original strand, 363 - 448
Target Start/End: Complemental strand, 3263013 - 3262928
Alignment:
Q  363 ttttcaaaattaccgaatctagaaaagcttataatgaagaattgttccaatttgtccgaggtggaccagtccattggagatctcaa 448  Q
    |||||||||| |||||||||||||||||| || |||||||||||| |    |||||  ||||  ||||||||||||||||||||||    
T  3263013 ttttcaaaatcaccgaatctagaaaagctcatcatgaagaattgtccatgcttgtctaaggtacaccagtccattggagatctcaa 3262928  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #15
Raw Score: 36; E-Value: 0.00000000004
Query Start/End: Original strand, 330 - 457
Target Start/End: Original strand, 3314639 - 3314766
Alignment:
Q  330 agtcattctaggtacttgaaaaacacccctgatttttcaaaattaccgaatctagaaaagcttataatgaagaattgttccaatttgtccgaggtggacc 429  Q
    |||||||| | |||||||| || ||||||||| ||||||||||||||||| |||||||| || || |||||  |||||   | |||||  || ||  ||     
T  3314639 agtcattcaatgtacttgacaagcacccctgacttttcaaaattaccgaacctagaaaatctcattatgaaagattgtcaaagtttgtttgaagtacact 3314738  T
Q  430 agtccattggagatctcaagaaccttct 457  Q
     ||||||||||||||||||||| |||||    
T  3314739 cgtccattggagatctcaagaagcttct 3314766  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #16
Raw Score: 33; E-Value: 0.000000003
Query Start/End: Original strand, 265 - 400
Target Start/End: Original strand, 13787161 - 13787297
Alignment:
Q  265 ctctaatttttcctttgaacatt-atctttttgcagttgttggataaactaaaaatactcaatgttagtcattctaggtacttgaaaaacacccctgatt 363  Q
    |||||||||||  ||| |||||| ||||| |||||| || |||  || |||||||| |||||| | |||||||| |  |||||| ||| | |||| || |    
T  13787161 ctctaatttttattttaaacatttatcttcttgcaggtgctggtgaatctaaaaattctcaatctcagtcattcaatttacttggaaagctccccagact 13787260  T
Q  364 tttcaaaattaccgaatctagaaaagcttataatgaa 400  Q
    ||||||||||||| ||||| |||||||| || |||||    
T  13787261 tttcaaaattacccaatcttgaaaagctcatcatgaa 13787297  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #17
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 70 - 217
Target Start/End: Complemental strand, 3408024 - 3407877
Alignment:
Q  70 ggtatctttcgaaagaactgagatggattcactggcaaggatttacctttaattatatacccgacgacttttaccaggaaaatctagttgtaattgaggt 169  Q
    |||||||||| ||| || |||||||| |  | |||||| ||| |||||| || | | ||||| |||||||| | ||||||||||| ||||   ||||  |    
T  3408024 ggtatctttccaaacaattgagatgggtcaattggcaacgatctaccttcaactttgtacccaacgactttgatcaggaaaatctcgttgcttttgaatt 3407925  T
Q  170 aaaacacagcagtatcaaacaagtgtggaaggataccaaggtataata 217  Q
    |||| | |||| | | |||||||| |||||||| ||||||||||||||    
T  3407924 aaaatatagcaatgttaaacaagtttggaaggaaaccaaggtataata 3407877  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #18
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 74 - 211
Target Start/End: Complemental strand, 3267881 - 3267744
Alignment:
Q  74 tctttcgaaagaactgagatggattcactggcaaggatttacctttaattatatacccgacgacttttaccaggaaaatctagttgtaattgaggtaaaa 173  Q
    |||||| |||||| |||||||| | || ||||| ||||||||   | | |||||||| || |||||||    || ||||||||||||  ||||| | |||    
T  3267881 tctttctaaagaattgagatggctccattggcagggatttactcatgaatatatacctgatgacttttttttgggaaatctagttgtttttgagttgaaa 3267782  T
Q  174 cacagcagtatcaaacaagtgtggaaggataccaaggt 211  Q
    ||||||| ||| |||||||| ||||| || ||||||||    
T  3267781 cacagcaatattaaacaagtttggaatgaaaccaaggt 3267744  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5 (Bit Score: 166; Significance: 1e-88; HSPs: 5)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 166; E-Value: 1e-88
Query Start/End: Original strand, 12 - 445
Target Start/End: Complemental strand, 12599793 - 12599357
Alignment:
Q  12 gagatgaagaaactgggacttttgcaatttgatcattccgtcctgaccggaaattatcggtatctttcgaaagaactgagatggattcactggcaaggat 111  Q
    ||||||||||||||  ||||||| ||| |||||||| | || || || ||| | ||||  || ||||| |||||||||||||||||||| ||||||||||    
T  12599793 gagatgaagaaactaagacttttacaacttgatcatgctgttctcacaggagactatcaatacctttccaaagaactgagatggattcattggcaaggat 12599694  T
Q  112 ttacctttaattatatacccgacgacttttaccaggaaaatctagttgtaattgaggtaaaacacagcagtatcaaacaagtgtggaaggataccaaggt 211  Q
    ||||||| || ||||| ||||| || ||||| |||| |||||| ||||| ||||   ||||| |||||||||| ||||||||||||||||| ||||||||    
T  12599693 ttaccttcaactatatgcccgatgatttttatcagggaaatctcgttgttattgtcataaaatacagcagtatgaaacaagtgtggaaggaaaccaaggt 12599594  T
Q  212 ataatattt--atttcaaactcaaagtttgatgaaagtagtatttgttcccacctctctaatttttcctttgaaca-ttatctttttgcagttgttggat 308  Q
    || ||||||   ||||| || ||||| ||||||  |||||||||||| ||||||||||||||||||| ||  |||| ||||||| ||| |||| ||||||    
T  12599593 atcatattttcttttcacacacaaagattgatggcagtagtatttgtccccacctctctaatttttctttgaaacatttatcttcttgaagttattggat 12599494  T
Q  309 aaactaaaaatactcaatgttagtcattctaggtacttgaaaaacacccctgatttttcaaaattaccgaatctagaaaagcttataatgaagaattgtt 408  Q
    ||||||||||| |||||||| ||||||||||| |||||| ||||| ||||||||||||||||||| |||||||||||||| ||||  || |||||||||     
T  12599493 aaactaaaaattctcaatgtcagtcattctagatacttggaaaactcccctgatttttcaaaattgccgaatctagaaaaacttactatcaagaattgtc 12599394  T
Q  409 ccaatttgtccgaggtggaccagtccattggagatct 445  Q
    |   |||||  |||||  |||||||||||||||||||    
T  12599393 catgtttgtatgaggtataccagtccattggagatct 12599357  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #2
Raw Score: 64; E-Value: 9e-28
Query Start/End: Original strand, 264 - 458
Target Start/End: Original strand, 30417534 - 30417729
Alignment:
Q  264 tctctaatttttcctttgaac-attatctttttgcagttgttggataaactaaaaatactcaatgttagtcattctaggtacttgaaaaacacccctgat 362  Q
    ||||||||||||| ||| ||  ||||| || ||||||||  |||| || |||||||| |||||  | |||||||| | ||||||||||||||||||| |     
T  30417534 tctctaatttttcttttaaatgattattttcttgcagtttctggacaagctaaaaattctcaacctcagtcattccaagtacttgaaaaacacccctaac 30417633  T
Q  363 ttttcaaaattaccgaatctagaaaagcttataatgaagaattgttccaatttgtccgaggtggaccagtccattggagatctcaagaaccttctt 458  Q
    ||||||  |||||||| |||||||||||| || |||||| ||||| | | ||||||||||||  ||| |||||||||||||||||| || ||||||    
T  30417634 ttttcattattaccgagtctagaaaagctcattatgaaggattgtccaagtttgtccgaggtacacccgtccattggagatctcaataatcttctt 30417729  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #3
Raw Score: 47; E-Value: 1e-17
Query Start/End: Original strand, 315 - 401
Target Start/End: Original strand, 20812043 - 20812129
Alignment:
Q  315 aaaatactcaatgttagtcattctaggtacttgaaaaacacccctgatttttcaaaattaccgaatctagaaaagcttataatgaag 401  Q
    ||||| |||||||| ||||||  || ||||||||||| |||||| || ||||||||||||||||||||||||||||| || ||||||    
T  20812043 aaaattctcaatgtcagtcataataagtacttgaaaatcaccccagacttttcaaaattaccgaatctagaaaagctcattatgaag 20812129  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #4
Raw Score: 46; E-Value: 5e-17
Query Start/End: Original strand, 294 - 391
Target Start/End: Original strand, 20838377 - 20838474
Alignment:
Q  294 ttgcagttgttggataaactaaaaatactcaatgttagtcattctaggtacttgaaaaacacccctgatttttcaaaattaccgaatctagaaaagct 391  Q
    |||||| |||| || || || ||||| |||||||| ||||||  || ||||||||||| |||||| || |||||||||||||||||||||||||||||    
T  20838377 ttgcagctgttagacaagctgaaaattctcaatgtcagtcataataagtacttgaaaatcaccccagacttttcaaaattaccgaatctagaaaagct 20838474  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #5
Raw Score: 41; E-Value: 0.00000000000005
Query Start/End: Original strand, 330 - 458
Target Start/End: Original strand, 15802692 - 15802820
Alignment:
Q  330 agtcattctaggtacttgaaaaacacccctgatttttcaaaattaccgaatctagaaaagcttataatgaagaattgttccaatttgtccgaggtggacc 429  Q
    |||||||||| |||||||||||  ||||| || |||||||||||||| || ||||||||||| || |||||| |||||   | | |||  |||||  |||    
T  15802692 agtcattctaagtacttgaaaagaacccccgacttttcaaaattaccaaacctagaaaagctaattatgaaggattgtcaaagtctgttggaggtacacc 15802791  T
Q  430 agtccattggagatctcaagaaccttctt 458  Q
     |||||||||||||||||| || ||||||    
T  15802792 cgtccattggagatctcaacaatcttctt 15802820  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3 (Bit Score: 79; Significance: 1e-36; HSPs: 2)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 79; E-Value: 1e-36
Query Start/End: Original strand, 296 - 458
Target Start/End: Complemental strand, 6906260 - 6906098
Alignment:
Q  296 gcagttgttggataaactaaaaatactcaatgttagtcattctaggtacttgaaaaacacccctgatttttcaaaattaccgaatctagaaaagcttata 395  Q
    |||||||||||| || ||||||||||||||| | |||||||| | |||||||||||  |||||||| ||||||||||||||||||||||||||||| ||     
T  6906260 gcagttgttggacaagctaaaaatactcaatctcagtcattccaagtacttgaaaagtacccctgacttttcaaaattaccgaatctagaaaagctcatt 6906161  T
Q  396 atgaagaattgttccaatttgtccgaggtggaccagtccattggagatctcaagaaccttctt 458  Q
    |||||| ||||| | | |||||||||| |  ||| ||||||||||| ||||||||| ||||||    
T  6906160 atgaaggattgtccaagtttgtccgagatacacccgtccattggagttctcaagaagcttctt 6906098  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #2
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 285 - 374
Target Start/End: Complemental strand, 32411523 - 32411434
Alignment:
Q  285 attatctttttgcagttgttggataaactaaaaatactcaatgttagtcattctaggtacttgaaaaacacccctgatttttcaaaatta 374  Q
    |||||||| ||||||||| |||| || || ||| | || ||| | |||||||||| || ||||||||||| ||| || ||||||||||||    
T  32411523 attatcttcttgcagttgatggagaagcttaaatttcttaatctcagtcattctaagttcttgaaaaacagccccgacttttcaaaatta 32411434  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0468 (Bit Score: 76; Significance: 6e-35; HSPs: 1)
Name: scaffold0468
Description:

Target: scaffold0468; HSP #1
Raw Score: 76; E-Value: 6e-35
Query Start/End: Original strand, 296 - 451
Target Start/End: Complemental strand, 6600 - 6445
Alignment:
Q  296 gcagttgttggataaactaaaaatactcaatgttagtcattctaggtacttgaaaaacacccctgatttttcaaaattaccgaatctagaaaagcttata 395  Q
    |||||||||||| || ||||||||||||||| | |||||||| | ||||||||||| ||||||||| ||||||||||||||||||||||||||||| ||     
T  6600 gcagttgttggacaagctaaaaatactcaatctcagtcattccaagtacttgaaaagcacccctgacttttcaaaattaccgaatctagaaaagctcatt 6501  T
Q  396 atgaagaattgttccaatttgtccgaggtggaccagtccattggagatctcaagaa 451  Q
    |||||| ||||| | | ||||||||||||  ||| |||||| ||||  ||||||||    
T  6500 atgaaggattgtccaagtttgtccgaggtacacccgtccataggagtgctcaagaa 6445  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2 (Bit Score: 58; Significance: 3e-24; HSPs: 2)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 58; E-Value: 3e-24
Query Start/End: Original strand, 263 - 451
Target Start/End: Complemental strand, 14767435 - 14767246
Alignment:
Q  263 ctctctaatttttcctttgaaca-ttatctttttgcagttgttggataaactaaaaatactcaatgttagtcattctaggtacttgaaaaacacccctga 361  Q
    |||||||||||||| ||| |||| |||||||  || ||||| |||| || |||||||| |||||| | ||||| || | |||||||| || |||||||||    
T  14767435 ctctctaatttttcttttaaacaattatcttcatgtagttgatggagaagctaaaaattctcaatctcagtcactccaagtacttgagaagcacccctga 14767336  T
Q  362 tttttcaaaattaccgaatctagaaaagcttataatgaagaattgttccaatttgtccgaggtggaccagtccattggagatctcaagaa 451  Q
     |||||||||||||| |||||||||||||| || |||||| |||||   | ||| ||| | ||  | |||||||||||||||||||||||    
T  14767335 cttttcaaaattaccaaatctagaaaagctcattatgaaggattgtcaaagtttatccaacgtacatcagtccattggagatctcaagaa 14767246  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #2
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 102 - 215
Target Start/End: Complemental strand, 14767591 - 14767478
Alignment:
Q  102 tggcaaggatttacctttaattatatacccgacgacttttaccaggaaaatctagttgtaattgaggtaaaacacagcagtatcaaacaagtgtggaagg 201  Q
    |||||| ||||| |||| || | |||||| || |||||||| ||||||||||||||||   ||||| ||||| | |||| | ||| |||||| |||||||    
T  14767591 tggcaacgattttccttcaaatgtatacctgatgacttttatcaggaaaatctagttgcttttgagctaaaatatagcaatgtcagacaagtttggaagg 14767492  T
Q  202 ataccaaggtataa 215  Q
    |  ||| |||||||    
T  14767491 aagccatggtataa 14767478  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7 (Bit Score: 44; Significance: 7e-16; HSPs: 1)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 44; E-Value: 7e-16
Query Start/End: Original strand, 264 - 458
Target Start/End: Complemental strand, 8372146 - 8371951
Alignment:
Q  264 tctctaatttttcctttgaaca-ttatctttttgcagttgttggataaactaaaaatactcaatgttagtcattctaggtacttgaaaaacacccctgat 362  Q
    ||||| ||||||| ||| |||| |||| || |||||||||||||| ||  ||||| | |||||  | |||||||| | ||||||||||| ||  |||||     
T  8372146 tctcttatttttcttttaaacaattattttcttgcagttgttggagaagttaaaagttctcaaactcagtcattccaagtacttgaaaagcagtcctgac 8372047  T
Q  363 ttttcaaaattaccgaatctagaaaagcttataatgaagaattgttccaatttgtccgaggtggaccagtccattggagatctcaagaaccttctt 458  Q
    |||||||||||||| ||||| ||||||||  | |||||| |||||   | | ||||| | ||  ||| ||||||||||||||||||||| ||||||    
T  8372046 ttttcaaaattaccaaatctggaaaagctagttatgaaggattgtcaaagtctgtccaacgtacacccgtccattggagatctcaagaatcttctt 8371951  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]



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