View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF4092_low_1 (Length: 530)

Name: NF4092_low_1
Description: NF4092
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF4092_low_1
NF4092_low_1
[»] chr4 (22 HSPs)
chr4 (320-497)||(570335-570512)
chr4 (325-495)||(1524429-1524599)
chr4 (320-501)||(1548361-1548543)
chr4 (386-494)||(553466-553574)
chr4 (386-497)||(8184034-8184145)
chr4 (325-494)||(55908671-55908840)
chr4 (386-497)||(8187095-8187206)
chr4 (325-441)||(12116518-12116634)
chr4 (386-441)||(1519146-1519201)
chr4 (333-432)||(1600468-1600567)
chr4 (386-497)||(7225887-7225998)
chr4 (376-497)||(1537761-1537882)
chr4 (381-498)||(1552766-1552883)
chr4 (391-432)||(659758-659799)
chr4 (386-491)||(1513411-1513516)
chr4 (325-426)||(53761715-53761816)
chr4 (338-497)||(370904-371063)
chr4 (386-497)||(3438570-3438680)
chr4 (386-432)||(1489365-1489411)
chr4 (386-432)||(12121461-12121507)
chr4 (364-432)||(532238-532306)
chr4 (386-426)||(644885-644925)
[»] chr8 (8 HSPs)
chr8 (330-497)||(21235542-21235709)
chr8 (381-495)||(18315272-18315386)
chr8 (386-486)||(27922503-27922603)
chr8 (370-495)||(32151287-32151412)
chr8 (386-489)||(17636405-17636508)
chr8 (386-493)||(28246299-28246404)
chr8 (364-497)||(34936145-34936278)
chr8 (372-441)||(17628004-17628073)
[»] chr6 (21 HSPs)
chr6 (365-473)||(12102274-12102382)
chr6 (327-441)||(6394904-6395018)
chr6 (325-491)||(6432151-6432317)
chr6 (327-491)||(6409996-6410160)
chr6 (327-426)||(6426566-6426665)
chr6 (386-493)||(11936279-11936386)
chr6 (386-493)||(11948259-11948366)
chr6 (223-263)||(12102377-12102417)
chr6 (1-39)||(12102743-12102781)
chr6 (380-497)||(9411339-9411456)
chr6 (324-432)||(6589265-6589373)
chr6 (381-432)||(9410751-9410802)
chr6 (325-491)||(6402850-6403016)
chr6 (366-432)||(6416015-6416081)
chr6 (386-475)||(28935055-28935144)
chr6 (386-438)||(6423260-6423312)
chr6 (343-431)||(7119207-7119295)
chr6 (343-431)||(7131685-7131773)
chr6 (165-211)||(28029057-28029103)
chr6 (97-138)||(12102683-12102724)
chr6 (364-432)||(6594588-6594656)
[»] chr3 (7 HSPs)
chr3 (325-497)||(51113724-51113896)
chr3 (364-489)||(51120875-51121000)
chr3 (327-497)||(13470677-13470847)
chr3 (386-493)||(1657239-1657346)
chr3 (401-443)||(27005791-27005833)
chr3 (393-443)||(36811038-36811088)
chr3 (338-374)||(514684-514720)
[»] chr2 (3 HSPs)
chr2 (386-496)||(32785776-32785886)
chr2 (325-494)||(1037607-1037776)
chr2 (325-491)||(45245028-45245194)
[»] chr1 (2 HSPs)
chr1 (338-432)||(19468455-19468549)
chr1 (415-502)||(7554467-7554554)
[»] chr5 (3 HSPs)
chr5 (327-486)||(32267470-32267626)
chr5 (389-486)||(41901542-41901639)
chr5 (389-491)||(37937877-37937979)
[»] chr7 (2 HSPs)
chr7 (327-431)||(10614643-10614747)
chr7 (370-426)||(15092139-15092195)
[»] scaffold0295 (1 HSPs)
scaffold0295 (325-497)||(567-739)


Alignment Details
Target: chr4 (Bit Score: 142; Significance: 3e-74; HSPs: 22)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 142; E-Value: 3e-74
Query Start/End: Original strand, 320 - 497
Target Start/End: Complemental strand, 570512 - 570335
Alignment:
Q  320 ttttaagatgttgtaaacttaggcatttgaacttagctcactgctcaaaagtgaaactgcatggagtgaactttgaagctcccaaactggaggtgttgaa 419  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||| |||||||||||| || |||||| |||||||||||    
T  570512 ttttaagatgttgtaaacttaggcatttgaacttagctcactgctcaaaagtgaaactgcgtggattgaactttgaagttctcaaactcgaggtgttgaa 570413  T
Q  420 cttgtcacatacatgagttgataacgaagaacgctatctgatttcaaagagttgtcgtgggcttttgcaactgttact 497  Q
    ||||||| ||||| |||||||||||||||||| |||||||||||||||||||||||| ||||||||||||||||||||    
T  570412 cttgtcatatacaggagttgataacgaagaactctatctgatttcaaagagttgtcgcgggcttttgcaactgttact 570335  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #2
Raw Score: 75; E-Value: 3e-34
Query Start/End: Original strand, 325 - 495
Target Start/End: Original strand, 1524429 - 1524599
Alignment:
Q  325 agatgttgtaaacttaggcatttgaacttagctcactgctcaaaagtgaaactgcatggagtgaactttgaagctcccaaactggaggtgttgaacttgt 424  Q
    ||||||||||||||||||||||||||||||||  |||| || ||| |  |||| |||||| |||||||||||| ||||||  ||||||||||||| ||||    
T  1524429 agatgttgtaaacttaggcatttgaacttagccaactgttctaaaatagaacttcatggaatgaactttgaagttcccaatttggaggtgttgaatttgt 1524528  T
Q  425 cacatacatgagttgataacgaagaacgctatctgatttcaaagagttgtcgtgggcttttgcaactgtta 495  Q
    ||| |||| | |||||| | |||  || |||| |||| ||| |||||||||||||||||||||||||||||    
T  1524529 cacgtacaagtgttgatgatgaaacactctatatgatctcacagagttgtcgtgggcttttgcaactgtta 1524599  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #3
Raw Score: 55; E-Value: 2e-22
Query Start/End: Original strand, 320 - 501
Target Start/End: Original strand, 1548361 - 1548543
Alignment:
Q  320 ttttaagatgttgtaaacttaggcatttgaacttagctcactgctcaaaagtgaaactgcat-ggagtgaactttgaagctcccaaactggaggtgttga 418  Q
    ||||||||||||||||  |||| || |||||||||||||   | | ||||||||| || | | ||| |||||||||||  ||||||||||||||||||||    
T  1548361 ttttaagatgttgtaagattagacagttgaacttagctcgtagtttaaaagtgaagctactttggactgaactttgaaattcccaaactggaggtgttga 1548460  T
Q  419 acttgtcacatacatgagttgataacgaagaacgctatctgatttcaaagagttgtcgtgggcttttgcaactgttactaaaa 501  Q
    |||||||||||||| |  ||||| | |||  || | || |||| |||||||||||| |||||||||||||  |||||| ||||    
T  1548461 acttgtcacatacaagtattgatgatgaaacactcaatgtgatctcaaagagttgttgtgggcttttgcacttgttacaaaaa 1548543  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #4
Raw Score: 49; E-Value: 9e-19
Query Start/End: Original strand, 386 - 494
Target Start/End: Complemental strand, 553574 - 553466
Alignment:
Q  386 tgaactttgaagctcccaaactggaggtgttgaacttgtcacatacatgagttgataacgaagaacgctatctgatttcaaagagttgtcgtgggctttt 485  Q
    |||||||| ||| || |||||||||||||||||||||||||  |||| |||||||| | |||| ||   || |||||||||||||||||  |||||||||    
T  553574 tgaactttaaagttctcaaactggaggtgttgaacttgtcatttacaagagttgatgatgaagcacttaatgtgatttcaaagagttgttctgggctttt 553475  T
Q  486 gcaactgtt 494  Q
    |||||||||    
T  553474 gcaactgtt 553466  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #5
Raw Score: 48; E-Value: 3e-18
Query Start/End: Original strand, 386 - 497
Target Start/End: Original strand, 8184034 - 8184145
Alignment:
Q  386 tgaactttgaagctcccaaactggaggtgttgaacttgtcacatacatgagttgataacgaagaacgctatctgatttcaaagagttgtcgtgggctttt 485  Q
    |||||||||||| ||| ||||| |||||||||||||||||||||||| |||||||| |   || || ||||   || |||||||||||| ||||||||||    
T  8184034 tgaactttgaagttccgaaactagaggtgttgaacttgtcacatacaagagttgatgatatagcactctatgcaatctcaaagagttgttgtgggctttt 8184133  T
Q  486 gcaactgttact 497  Q
    | ||||||||||    
T  8184134 ggaactgttact 8184145  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #6
Raw Score: 46; E-Value: 5e-17
Query Start/End: Original strand, 325 - 494
Target Start/End: Original strand, 55908671 - 55908840
Alignment:
Q  325 agatgttgtaaacttaggcatttgaacttagctcactgctcaaaagtgaaactgcatggagtgaactttgaagctcccaaactggaggtgttgaacttgt 424  Q
    |||||||||||  |||| |||||||| |||||  |||| |||| ||||||||| | | || | |||||| ||| |||  || | |||||||| |||||||    
T  55908671 agatgttgtaaggttagacatttgaatttagcctactgttcaagagtgaaactacttagaataaactttaaagttcctgaattagaggtgtttaacttgt 55908770  T
Q  425 cacatacatgagttgataacgaagaacgctatctgatttcaaagagttgtcgtgggcttttgcaactgtt 494  Q
    |||||||||| |||||| | |||  || |||| |||| ||||||| |||| |||||||||| ||||||||    
T  55908771 cacatacatgtgttgatgatgaaacactctatatgatctcaaagaattgttgtgggcttttacaactgtt 55908840  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #7
Raw Score: 44; E-Value: 8e-16
Query Start/End: Original strand, 386 - 497
Target Start/End: Original strand, 8187095 - 8187206
Alignment:
Q  386 tgaactttgaagctcccaaactggaggtgttgaacttgtcacatacatgagttgataacgaagaacgctatctgatttcaaagagttgtcgtgggctttt 485  Q
    |||||||||||  | |||||||||||||||||||||||||||||||| |||||||| |  ||  ||  |||   ||||||||||||||| ||||||||||    
T  8187095 tgaactttgaaatttccaaactggaggtgttgaacttgtcacatacaagagttgatgataaaacactttatgcaatttcaaagagttgttgtgggctttt 8187194  T
Q  486 gcaactgttact 497  Q
    |||  |||||||    
T  8187195 gcagttgttact 8187206  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #8
Raw Score: 41; E-Value: 0.00000000000005
Query Start/End: Original strand, 325 - 441
Target Start/End: Original strand, 12116518 - 12116634
Alignment:
Q  325 agatgttgtaaacttaggcatttgaacttagctcactgctcaaaagtgaaactgcatggagtgaactttgaagctcccaaactggaggtgttgaacttgt 424  Q
    |||||||||||||| |||||||  ||||||||  |||| |||||| | ||||||| | || |||||||||| | ||| ||  | ||||||||||||||||    
T  12116518 agatgttgtaaactaaggcattaaaacttagcctactgttcaaaaataaaactgcgtagaatgaactttgatgttccaaatttagaggtgttgaacttgt 12116617  T
Q  425 cacatacatgagttgat 441  Q
    |||||||| | ||||||    
T  12116618 cacatacaagtgttgat 12116634  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #9
Raw Score: 40; E-Value: 0.0000000000002
Query Start/End: Original strand, 386 - 441
Target Start/End: Original strand, 1519146 - 1519201
Alignment:
Q  386 tgaactttgaagctcccaaactggaggtgttgaacttgtcacatacatgagttgat 441  Q
    |||||||||||| ||||||||| |||||||||||||||||||||||| | ||||||    
T  1519146 tgaactttgaagttcccaaactagaggtgttgaacttgtcacatacaagggttgat 1519201  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #10
Raw Score: 40; E-Value: 0.0000000000002
Query Start/End: Original strand, 333 - 432
Target Start/End: Complemental strand, 1600567 - 1600468
Alignment:
Q  333 taaacttaggcatttgaacttagctcactgctcaaaagtgaaactgcatggagtgaactttgaagctcccaaactggaggtgttgaacttgtcacataca 432  Q
    |||| |||| |||||||||||||| || || |||| | |||| ||||  ||| |||||||||||| ||  |||||||||||||||||||||||| |||||    
T  1600567 taaaattagacatttgaacttagcccagtgttcaataatgaagctgcgaggaatgaactttgaagttcttaaactggaggtgttgaacttgtcatataca 1600468  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #11
Raw Score: 40; E-Value: 0.0000000000002
Query Start/End: Original strand, 386 - 497
Target Start/End: Original strand, 7225887 - 7225998
Alignment:
Q  386 tgaactttgaagctcccaaactggaggtgttgaacttgtcacatacatgagttgataacgaagaacgctatctgatttcaaagagttgtcgtgggctttt 485  Q
    |||||||||||| || | || ||||||| |||||||||||||||||| |||||||| || ||| ||    | |||| |||||||||||| |||| |||||    
T  7225887 tgaactttgaagttctcgaattggaggtcttgaacttgtcacatacaagagttgatgacaaaggacttcgtgtgatatcaaagagttgttgtggactttt 7225986  T
Q  486 gcaactgttact 497  Q
    |||||| |||||    
T  7225987 gcaactattact 7225998  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #12
Raw Score: 38; E-Value: 0.000000000003
Query Start/End: Original strand, 376 - 497
Target Start/End: Original strand, 1537761 - 1537882
Alignment:
Q  376 ctgcatggagtgaactttgaagctcccaaactggaggtgttgaacttgtcacatacatgagttgataacgaagaacgctatctgatttcaaagagttgtc 475  Q
    ||||||||| |||||||||||| ||||||||| || ||||||||||||||| |||||   ||| || || ||  ||  | | | || |||||| ||||||    
T  1537761 ctgcatggaatgaactttgaagttcccaaactagaagtgttgaacttgtcatatacaaatgttaatgacaaaacactgtgtgtaatctcaaagtgttgtc 1537860  T
Q  476 gtgggcttttgcaactgttact 497  Q
    |||||||||||||||| |||||    
T  1537861 gtgggcttttgcaacttttact 1537882  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #13
Raw Score: 38; E-Value: 0.000000000003
Query Start/End: Original strand, 381 - 498
Target Start/End: Original strand, 1552766 - 1552883
Alignment:
Q  381 tggagtgaactttgaagctcccaaactggaggtgttgaacttgtcacatacatgagttgataacgaagaacgctatctgatttcaaagagttgtcgtggg 480  Q
    |||| |||||||||||  |||||||||||| |||||||| ||||||||||||    || || | |||  || | || |||| ||||||| ||||||||||    
T  1552766 tggactgaactttgaaattcccaaactggaagtgttgaatttgtcacatacaaatattaatgatgaaacactcaatgtgatatcaaagaattgtcgtggg 1552865  T
Q  481 cttttgcaactgttacta 498  Q
    |||||||| |||||||||    
T  1552866 cttttgcagctgttacta 1552883  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #14
Raw Score: 34; E-Value: 0.0000000008
Query Start/End: Original strand, 391 - 432
Target Start/End: Complemental strand, 659799 - 659758
Alignment:
Q  391 tttgaagctcccaaactggaggtgttgaacttgtcacataca 432  Q
    ||||||| ||||||||| ||||||||||||||||||||||||    
T  659799 tttgaagttcccaaactagaggtgttgaacttgtcacataca 659758  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #15
Raw Score: 34; E-Value: 0.0000000008
Query Start/End: Original strand, 386 - 491
Target Start/End: Original strand, 1513411 - 1513516
Alignment:
Q  386 tgaactttgaagctcccaaactggaggtgttgaacttgtcacatacatgagttgataacgaagaacgctatctgatttcaaagagttgtcgtgggctttt 485  Q
    |||||||||||| ||||||||| || |||||||||||||||  ||||   |||||| | |||  || |||  | || |||||| ||||||||||||||||    
T  1513411 tgaactttgaagttcccaaactagaagtgttgaacttgtcatttacaaatgttgatgatgaaacactctacgtaatctcaaagtgttgtcgtgggctttt 1513510  T
Q  486 gcaact 491  Q
    ||||||    
T  1513511 gcaact 1513516  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #16
Raw Score: 34; E-Value: 0.0000000008
Query Start/End: Original strand, 325 - 426
Target Start/End: Original strand, 53761715 - 53761816
Alignment:
Q  325 agatgttgtaaacttaggcatttgaacttagctcactgctcaaaagtgaaactgcatggagtgaactttgaagctcccaaactggaggtgttgaacttgt 424  Q
    |||||||||||  |||||||||||||||||||  | || |||| |||||| ||   |||| ||||||||| || |||||| || |||| |||||||||||    
T  53761715 agatgttgtaacattaggcatttgaacttagccgagtgttcaagagtgaagctaattggaatgaactttgtagttcccaagctagaggcgttgaacttgt 53761814  T
Q  425 ca 426  Q
    ||    
T  53761815 ca 53761816  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #17
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 338 - 497
Target Start/End: Complemental strand, 371063 - 370904
Alignment:
Q  338 ttaggcatttgaacttagctcactgctcaaaagtgaaactgcatggagtgaactttgaagctcccaaactggaggtgttgaacttgtcacatacatgagt 437  Q
    ||||||||||||||||||| |||||||||| ||||||  || ||||  ||||| ||  || || |||||| |||||||||| |||   | ||||| ||||    
T  371063 ttaggcatttgaacttagcccactgctcaagagtgaagttgtatggtatgaacattagagttctcaaacttgaggtgttgagcttaatagatacaagagt 370964  T
Q  438 tgataacgaagaacgctatctgatttcaaagagttgtcgtgggcttttgcaactgttact 497  Q
      || | |||| ||   || |||| |||||||||||| || ||||||||||||| |||||    
T  370963 ctattatgaagcacttcatgtgatctcaaagagttgttgtcggcttttgcaactattact 370904  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #18
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 386 - 497
Target Start/End: Original strand, 3438570 - 3438680
Alignment:
Q  386 tgaactttgaagctcccaaactggaggtgttgaacttgtcacatacatgagttgataacgaagaacgctatctgatttcaaagagttgtcgtgggctttt 485  Q
    |||||||||| | | | ||| ||||||| |||| ||||||||||||| |||||||| |  || | | | || | || |||||||||||| ||||||||||    
T  3438570 tgaactttgatgtttcaaaattggaggtattgagcttgtcacatacaagagttgatgataaata-ctccatgtaatctcaaagagttgttgtgggctttt 3438668  T
Q  486 gcaactgttact 497  Q
    ||||||||||||    
T  3438669 gcaactgttact 3438680  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #19
Raw Score: 31; E-Value: 0.00000005
Query Start/End: Original strand, 386 - 432
Target Start/End: Original strand, 1489365 - 1489411
Alignment:
Q  386 tgaactttgaagctcccaaactggaggtgttgaacttgtcacataca 432  Q
    |||||||||||| ||||||||| || ||||||||||||||| |||||    
T  1489365 tgaactttgaagttcccaaactagaagtgttgaacttgtcatataca 1489411  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #20
Raw Score: 31; E-Value: 0.00000005
Query Start/End: Original strand, 386 - 432
Target Start/End: Original strand, 12121461 - 12121507
Alignment:
Q  386 tgaactttgaagctcccaaactggaggtgttgaacttgtcacataca 432  Q
    |||||||||||| ||||||||| || ||||||||||||||| |||||    
T  12121461 tgaactttgaagttcccaaactagaagtgttgaacttgtcatataca 12121507  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #21
Raw Score: 29; E-Value: 0.0000007
Query Start/End: Original strand, 364 - 432
Target Start/End: Complemental strand, 532306 - 532238
Alignment:
Q  364 tcaaaagtgaaactgcatggagtgaactttgaagctcccaaactggaggtgttgaacttgtcacataca 432  Q
    |||| |||||| || | |||| ||||||||||||  ||||| || |||||||||||||||||| |||||    
T  532306 tcaagagtgaatctacttggaatgaactttgaagtccccaagctagaggtgttgaacttgtcatataca 532238  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #22
Raw Score: 29; E-Value: 0.0000007
Query Start/End: Original strand, 386 - 426
Target Start/End: Complemental strand, 644925 - 644885
Alignment:
Q  386 tgaactttgaagctcccaaactggaggtgttgaacttgtca 426  Q
    |||||||||||| ||||||||||||||||||  ||||||||    
T  644925 tgaactttgaagttcccaaactggaggtgttagacttgtca 644885  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8 (Bit Score: 128; Significance: 6e-66; HSPs: 8)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 128; E-Value: 6e-66
Query Start/End: Original strand, 330 - 497
Target Start/End: Complemental strand, 21235709 - 21235542
Alignment:
Q  330 ttgtaaacttaggcatttgaacttagctcactgctcaaaagtgaaactgcatggagtgaactttgaagctcccaaactggaggtgttgaacttgtcacat 429  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||  ||||||||||||||||| |||||||||||||||||||||||||||| ||    
T  21235709 ttgtaaacttaggcatttgaacttagctcactgctcaaaagtgaaactgtgtggagtgaactttgaagttcccaaactggaggtgttgaacttgtcatat 21235610  T
Q  430 acatgagttgataacgaagaacgctatctgatttcaaagagttgtcgtgggcttttgcaactgttact 497  Q
    ||| |||||||||||||||||| |||| ||||||||||||| |||||  |||||||||||||||||||    
T  21235609 acaggagttgataacgaagaactctatttgatttcaaagagctgtcgcaggcttttgcaactgttact 21235542  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #2
Raw Score: 67; E-Value: 2e-29
Query Start/End: Original strand, 381 - 495
Target Start/End: Original strand, 18315272 - 18315386
Alignment:
Q  381 tggagtgaactttgaagctcccaaactggaggtgttgaacttgtcacatacatgagttgataacgaagaacgctatctgatttcaaagagttgtcgtggg 480  Q
    |||| |||||||| ||| ||||||||||||||||||||||||||||||||||  ||||||| | |||| || |||| |||| ||||||||||||||| ||    
T  18315272 tggaatgaactttaaagttcccaaactggaggtgttgaacttgtcacatacaaaagttgatgatgaagcactctatgtgatctcaaagagttgtcgtagg 18315371  T
Q  481 cttttgcaactgtta 495  Q
    |||||||||||||||    
T  18315372 cttttgcaactgtta 18315386  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #3
Raw Score: 45; E-Value: 2e-16
Query Start/End: Original strand, 386 - 486
Target Start/End: Complemental strand, 27922603 - 27922503
Alignment:
Q  386 tgaactttgaagctcccaaactggaggtgttgaacttgtcacatacatgagttgataacgaagaacgctatctgatttcaaagagttgtcgtgggctttt 485  Q
    |||||||||||| ||||||| |||||||||||||||||||| |||||   |||||| | |||| ||  ||| |||| |||||||||||| ||||||||||    
T  27922603 tgaactttgaagttcccaaattggaggtgttgaacttgtcatatacaaatgttgatgatgaagcactttatatgatctcaaagagttgttgtgggctttt 27922504  T
Q  486 g 486  Q
    |    
T  27922503 g 27922503  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #4
Raw Score: 42; E-Value: 0.00000000000001
Query Start/End: Original strand, 370 - 495
Target Start/End: Complemental strand, 32151412 - 32151287
Alignment:
Q  370 gtgaaactgcatggagtgaactttgaagctcccaaactggaggtgttgaacttgtcacatacatgagttgataacgaagaacgctatctgatttcaaaga 469  Q
    ||||| |||| |||| ||||||| |||| | |||| ||||||||||| |||||||||  |||| |  ||||| | |||  || |||| |||| |||||||    
T  32151412 gtgaagctgcgtggaatgaacttcgaagtttccaatctggaggtgttaaacttgtcatgtacaaggtttgatgatgaaacactctatgtgatctcaaaga 32151313  T
Q  470 gttgtcgtgggcttttgcaactgtta 495  Q
    ||||| ||||||||||||||||||||    
T  32151312 gttgtagtgggcttttgcaactgtta 32151287  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #5
Raw Score: 40; E-Value: 0.0000000000002
Query Start/End: Original strand, 386 - 489
Target Start/End: Original strand, 17636405 - 17636508
Alignment:
Q  386 tgaactttgaagctcccaaactggaggtgttgaacttgtcacatacatgagttgataacgaagaacgctatctgatttcaaagagttgtcgtgggctttt 485  Q
    |||||||||||| ||||||| |||||||||||||||||||||| ||| |||||||  | |||| |   ||| |||| ||||||||||||| | | |||||    
T  17636405 tgaactttgaagttcccaaattggaggtgttgaacttgtcacaaacaggagttgacgatgaagcattgtatgtgatctcaaagagttgtcttagactttt 17636504  T
Q  486 gcaa 489  Q
    ||||    
T  17636505 gcaa 17636508  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #6
Raw Score: 37; E-Value: 0.00000000001
Query Start/End: Original strand, 386 - 493
Target Start/End: Original strand, 28246299 - 28246404
Alignment:
Q  386 tgaactttgaagctcccaaactggaggtgttgaacttgtcacatacatgagttgataacgaagaacgctatctgatttcaaagagttgtcgtgggctttt 485  Q
    |||||||||||| ||||||||||||||||||| ||||||||  |||| ||||||  ||  ||  || ||||  ||| |||||||||||| | ||||||||    
T  28246299 tgaactttgaagttcccaaactggaggtgttggacttgtcatttacaagagttg--aataaatcactctattggatctcaaagagttgtagcgggctttt 28246396  T
Q  486 gcaactgt 493  Q
    ||||||||    
T  28246397 gcaactgt 28246404  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #7
Raw Score: 34; E-Value: 0.0000000008
Query Start/End: Original strand, 364 - 497
Target Start/End: Original strand, 34936145 - 34936278
Alignment:
Q  364 tcaaaagtgaaactgcatggagtgaactttgaagctcccaaactggaggtgttgaacttgtcacatacatgagttgataacgaagaacgctatctgattt 463  Q
    ||||||||||| || ||  || ||| |||||| | ||| ||||| ||||||||| |||||||| ||||| |||||||| |  ||  || ||||   ||      
T  34936145 tcaaaagtgaaccttcacagaatgatctttgatgttccaaaactagaggtgttggacttgtcatatacaagagttgatgataaaacactctatgccatcg 34936244  T
Q  464 caaagagttgtcgtgggcttttgcaactgttact 497  Q
    |||||||||||||||||||||||||||| |||||    
T  34936245 caaagagttgtcgtgggcttttgcaactattact 34936278  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #8
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 372 - 441
Target Start/End: Original strand, 17628004 - 17628073
Alignment:
Q  372 gaaactgcatggagtgaactttgaagctcccaaactggaggtgttgaacttgtcacatacatgagttgat 441  Q
    |||| |||| |||||||||||| ||  | | ||| |||||||||||||||||||||||||  ||||||||    
T  17628004 gaaaatgcaaggagtgaactttaaactttctaaattggaggtgttgaacttgtcacatactagagttgat 17628073  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6 (Bit Score: 97; Significance: 2e-47; HSPs: 21)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 97; E-Value: 2e-47
Query Start/End: Original strand, 365 - 473
Target Start/End: Complemental strand, 12102382 - 12102274
Alignment:
Q  365 caaaagtgaaactgcatggagtgaactttgaagctcccaaactggaggtgttgaacttgtcacatacatgagttgataacgaagaacgctatctgatttc 464  Q
    |||||||||||||||||||| |||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||    
T  12102382 caaaagtgaaactgcatggattgaactttgaagttcccaaactggaggtgttgaacttgtcacatacatgagttgataacgaagaactctatctgatttc 12102283  T
Q  465 aaagagttg 473  Q
    |||||||||    
T  12102282 aaagagttg 12102274  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #2
Raw Score: 55; E-Value: 2e-22
Query Start/End: Original strand, 327 - 441
Target Start/End: Complemental strand, 6395018 - 6394904
Alignment:
Q  327 atgttgtaaacttaggcatttgaacttagctcactgctcaaaagtgaaactgcatggagtgaactttgaagctcccaaactggaggtgttgaacttgtca 426  Q
    ||||||||| ||||  |||||||||||||||  ||| |||||||||||||| |||||| ||||||||| || |||| | |||||||||||||||||||||    
T  6395018 atgttgtaagcttaaacatttgaacttagctttctgttcaaaagtgaaactacatggaatgaactttgcagttcccgagctggaggtgttgaacttgtca 6394919  T
Q  427 catacatgagttgat 441  Q
     ||||| | ||||||    
T  6394918 aatacaagcgttgat 6394904  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #3
Raw Score: 51; E-Value: 6e-20
Query Start/End: Original strand, 325 - 491
Target Start/End: Complemental strand, 6432317 - 6432151
Alignment:
Q  325 agatgttgtaaacttaggcatttgaacttagctcactgctcaaaagtgaaactgcatggagtgaactttgaagctcccaaactggaggtgttgaacttgt 424  Q
    ||||||||||||||||  ||||||||||||||  | ||   ||||||||| || |||||| |||||||||||| |||||| ||| |||||||||||||||    
T  6432317 agatgttgtaaacttaaacatttgaacttagcctattgtataaaagtgaagctacatggaatgaactttgaagttcccaagctgaaggtgttgaacttgt 6432218  T
Q  425 cacatacatgagttgataacgaagaacgctatctgatttcaaagagttgtcgtgggcttttgcaact 491  Q
    || ||||| | |||||| | |||  ||  ||| |||| | ||||| |||| |||||||| |||||||    
T  6432217 caaatacaagcgttgatgatgaaacactttatgtgatcttaaagaattgttgtgggcttctgcaact 6432151  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #4
Raw Score: 45; E-Value: 2e-16
Query Start/End: Original strand, 327 - 491
Target Start/End: Complemental strand, 6410160 - 6409996
Alignment:
Q  327 atgttgtaaacttaggcatttgaacttagctcactgctcaaaagtgaaactgcatggagtgaactttgaagctcccaaactggaggtgttgaacttgtca 426  Q
    ||||||||| |||| ||||||| |||||||  | |||  ||||||||| || |||||| |||||||||||| |||||| ||| |||||||||||| ||||    
T  6410160 atgttgtaagcttaagcatttggacttagcctattgcaaaaaagtgaagctacatggaatgaactttgaagttcccaagctgaaggtgttgaactagtca 6410061  T
Q  427 catacatgagttgataacgaagaacgctatctgatttcaaagagttgtcgtgggcttttgcaact 491  Q
     ||||| | |||||| | |||   |  ||| |||| ||||||| |||| || |||||||||||||    
T  6410060 aatacaagcgttgatgatgaaactctttatgtgatctcaaagaattgttgtcggcttttgcaact 6409996  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #5
Raw Score: 44; E-Value: 8e-16
Query Start/End: Original strand, 327 - 426
Target Start/End: Complemental strand, 6426665 - 6426566
Alignment:
Q  327 atgttgtaaacttaggcatttgaacttagctcactgctcaaaagtgaaactgcatggagtgaactttgaagctcccaaactggaggtgttgaacttgtca 426  Q
    ||||||||| ||||  |||||||||||||||  ||| ||||| |||||||| |||||| ||||||||| || |||| | |||||||||||||| ||||||    
T  6426665 atgttgtaagcttaaacatttgaacttagctttctgttcaaacgtgaaactacatggaatgaactttgcagttcccgagctggaggtgttgaatttgtca 6426566  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #6
Raw Score: 44; E-Value: 8e-16
Query Start/End: Original strand, 386 - 493
Target Start/End: Original strand, 11936279 - 11936386
Alignment:
Q  386 tgaactttgaagctcccaaactggaggtgttgaacttgtcacatacatgagttgataacgaagaacgctatctgatttcaaagagttgtcgtgggctttt 485  Q
    |||||||||||| ||||||||||||||||||| ||||||||  |||| |||||||  |  ||  || ||||  ||| |||||||||||| ||||||||||    
T  11936279 tgaactttgaagttcccaaactggaggtgttggacttgtcatttacaagagttgacgataaatcactctattggatctcaaagagttgtagtgggctttt 11936378  T
Q  486 gcaactgt 493  Q
    ||||||||    
T  11936379 gcaactgt 11936386  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #7
Raw Score: 44; E-Value: 8e-16
Query Start/End: Original strand, 386 - 493
Target Start/End: Original strand, 11948259 - 11948366
Alignment:
Q  386 tgaactttgaagctcccaaactggaggtgttgaacttgtcacatacatgagttgataacgaagaacgctatctgatttcaaagagttgtcgtgggctttt 485  Q
    |||||||||||| ||||||||||||||||||| ||||||||  |||| |||||||  |  ||  || ||||  ||| |||||||||||| ||||||||||    
T  11948259 tgaactttgaagttcccaaactggaggtgttggacttgtcatttacaagagttgacgataaatcactctattggatctcaaagagttgtagtgggctttt 11948358  T
Q  486 gcaactgt 493  Q
    ||||||||    
T  11948359 gcaactgt 11948366  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #8
Raw Score: 41; E-Value: 0.00000000000005
Query Start/End: Original strand, 223 - 263
Target Start/End: Complemental strand, 12102417 - 12102377
Alignment:
Q  223 gcagaaaatcactagagctagtcactatagtggcgcaaaag 263  Q
    |||||||||||||||||||||||||||||||||||||||||    
T  12102417 gcagaaaatcactagagctagtcactatagtggcgcaaaag 12102377  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #9
Raw Score: 39; E-Value: 0.0000000000008
Query Start/End: Original strand, 1 - 39
Target Start/End: Complemental strand, 12102781 - 12102743
Alignment:
Q  1 cattacctgaccggagcatcactcttgaggtccttgtac 39  Q
    |||||||||||||||||||||||||||||||||||||||    
T  12102781 cattacctgaccggagcatcactcttgaggtccttgtac 12102743  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #10
Raw Score: 38; E-Value: 0.000000000003
Query Start/End: Original strand, 380 - 497
Target Start/End: Complemental strand, 9411456 - 9411339
Alignment:
Q  380 atggagtgaactttgaagctcccaaactggaggtgttgaacttgtcacatacatgagttgataacgaagaacgctatctgatttcaaagagttgtcgtgg 479  Q
    ||||| |||||||||| | |||||| ||||||||||||||||||||| ||||| | |||    | |||  || ||||  ||| ||||||| |||||||||    
T  9411456 atggattgaactttgaggttcccaagctggaggtgttgaacttgtcatatacaggtgttttcgatgaaatactctatgagatctcaaagaattgtcgtgg 9411357  T
Q  480 gcttttgcaactgttact 497  Q
     |||||||||||||||||    
T  9411356 acttttgcaactgttact 9411339  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #11
Raw Score: 37; E-Value: 0.00000000001
Query Start/End: Original strand, 324 - 432
Target Start/End: Original strand, 6589265 - 6589373
Alignment:
Q  324 aagatgttgtaaacttaggcatttgaacttagctcactgctcaaaagtgaaactgcatggagtgaactttgaagctcccaaactggaggtgttgaacttg 423  Q
    ||||||||||||  |||||||||||||||||||   |||    |||||||| || | |||| ||||||||| || |||||  ||||||||||||||||||    
T  6589265 aagatgttgtaagattaggcatttgaacttagccttctgtaagaaagtgaagctacttggaatgaactttgtagttcccatgctggaggtgttgaacttg 6589364  T
Q  424 tcacataca 432  Q
    ||| |||||    
T  6589365 tcaaataca 6589373  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #12
Raw Score: 36; E-Value: 0.00000000005
Query Start/End: Original strand, 381 - 432
Target Start/End: Complemental strand, 9410802 - 9410751
Alignment:
Q  381 tggagtgaactttgaagctcccaaactggaggtgttgaacttgtcacataca 432  Q
    |||| |||||||||||||||||||  ||||||||||||| ||||||||||||    
T  9410802 tggattgaactttgaagctcccaagttggaggtgttgaatttgtcacataca 9410751  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #13
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 325 - 491
Target Start/End: Complemental strand, 6403016 - 6402850
Alignment:
Q  325 agatgttgtaaacttaggcatttgaacttagctcactgctcaaaagtgaaactgcatggagtgaactttgaagctcccaaactggaggtgttgaacttgt 424  Q
    |||||||||||  ||||||||||||||||| ||   || |||| |||||| || | |||| | ||||||| || |||| |||| || |||||||||||||    
T  6403016 agatgttgtaacattaggcatttgaacttaactgggtgttcaagagtgaagctacttggaataaactttgcagttccccaactagaagtgttgaacttgt 6402917  T
Q  425 cacatacatgagttgataacgaagaacgctatctgatttcaaagagttgtcgtgggcttttgcaact 491  Q
    || ||||    |||||| | |||  || |||| |||| ||||||| |||| ||||||||||| ||||    
T  6402916 cagatacgaaggttgatgatgaaacactctatgtgatctcaaagaattgtagtgggcttttgaaact 6402850  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #14
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 366 - 432
Target Start/End: Complemental strand, 6416081 - 6416015
Alignment:
Q  366 aaaagtgaaactgcatggagtgaactttgaagctcccaaactggaggtgttgaacttgtcacataca 432  Q
    ||||||||| || |||||| || |||||| || |||||| ||||||||||||||||||||| |||||    
T  6416081 aaaagtgaagctacatggaatggactttgtagttcccaacctggaggtgttgaacttgtcaaataca 6416015  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #15
Raw Score: 34; E-Value: 0.0000000008
Query Start/End: Original strand, 386 - 475
Target Start/End: Complemental strand, 28935144 - 28935055
Alignment:
Q  386 tgaactttgaagctcccaaactggaggtgttgaacttgtcacatacatgagttgataacgaagaacgctatctgatttcaaagagttgtc 475  Q
    |||| ||||| | |||| |||| |||||||||||||||||||||||| |||||||  | |||| || |  | ||||||||||||||||||    
T  28935144 tgaagtttgatgttccccaactcgaggtgttgaacttgtcacatacaagagttgacgatgaagcactcagtgtgatttcaaagagttgtc 28935055  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #16
Raw Score: 33; E-Value: 0.000000003
Query Start/End: Original strand, 386 - 438
Target Start/End: Complemental strand, 6423312 - 6423260
Alignment:
Q  386 tgaactttgaagctcccaaactggaggtgttgaacttgtcacatacatgagtt 438  Q
    |||||||| ||| |||||| ||||||||||||||||||||| ||||| |||||    
T  6423312 tgaacttttaagttcccaagctggaggtgttgaacttgtcaaatacaagagtt 6423260  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #17
Raw Score: 33; E-Value: 0.000000003
Query Start/End: Original strand, 343 - 431
Target Start/End: Complemental strand, 7119295 - 7119207
Alignment:
Q  343 catttgaacttagctcactgctcaaaagtgaaactgcatggagtgaactttgaagctcccaaactggaggtgttgaacttgtcacatac 431  Q
    |||||||||||||| ||||| |||| |||||| || | |||| |||||||||  | || | | ||||||||||||||||||||| ||||    
T  7119295 catttgaacttagcccactgttcaagagtgaagctacttggaatgaactttgttgttcaccagctggaggtgttgaacttgtcagatac 7119207  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #18
Raw Score: 33; E-Value: 0.000000003
Query Start/End: Original strand, 343 - 431
Target Start/End: Complemental strand, 7131773 - 7131685
Alignment:
Q  343 catttgaacttagctcactgctcaaaagtgaaactgcatggagtgaactttgaagctcccaaactggaggtgttgaacttgtcacatac 431  Q
    |||||||||||||| ||||| |||| |||||| || | |||| |||||||||  | || | | ||||||||||||||||||||| ||||    
T  7131773 catttgaacttagcccactgttcaagagtgaagctacttggaatgaactttgttgttcgccagctggaggtgttgaacttgtcagatac 7131685  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #19
Raw Score: 31; E-Value: 0.00000005
Query Start/End: Original strand, 165 - 211
Target Start/End: Original strand, 28029057 - 28029103
Alignment:
Q  165 catgttattggttcattctggtacctcttcggtctagaggcgagtaa 211  Q
    |||||| ||||||||| |||||||||||| |||||||||| ||||||    
T  28029057 catgttgttggttcatgctggtacctctttggtctagaggtgagtaa 28029103  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #20
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 97 - 138
Target Start/End: Complemental strand, 12102724 - 12102683
Alignment:
Q  97 cgggctcactttcgagtcattttgggcaaatcacataataat 138  Q
    |||||||||||| |||| ||||||||||||||||||| ||||    
T  12102724 cgggctcacttttgagttattttgggcaaatcacatattaat 12102683  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #21
Raw Score: 29; E-Value: 0.0000007
Query Start/End: Original strand, 364 - 432
Target Start/End: Original strand, 6594588 - 6594656
Alignment:
Q  364 tcaaaagtgaaactgcatggagtgaactttgaagctcccaaactggaggtgttgaacttgtcacataca 432  Q
    |||| |||||| || |||||| | ||||||  || ||||||||||||||||||| |||||||| |||||    
T  6594588 tcaagagtgaagctacatggaataaactttttagttcccaaactggaggtgttgtacttgtcaaataca 6594656  T

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Target: chr3 (Bit Score: 77; Significance: 2e-35; HSPs: 7)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 77; E-Value: 2e-35
Query Start/End: Original strand, 325 - 497
Target Start/End: Original strand, 51113724 - 51113896
Alignment:
Q  325 agatgttgtaaacttaggcatttgaacttagctcactgctcaaaagtgaaactgcatggagtgaactttgaagctcccaaactggaggtgttgaacttgt 424  Q
    |||||||||||| ||||||||||||| |||||| |||| |||||| |||| || | |||| |||||||||||||||||||||||||||||||  ||||||    
T  51113724 agatgttgtaaaattaggcatttgaaattagcttactgttcaaaactgaagctacttggaatgaactttgaagctcccaaactggaggtgttagacttgt 51113823  T
Q  425 cacatacatgagttgataacgaagaacgctatctgatttcaaagagttgtcgtgggcttttgcaactgttact 497  Q
    || |||||   |||||| | |||  || |||| |||| || ||||||||| ||||||||||||||||||||||    
T  51113824 caaatacaatggttgatgatgaaacactctatgtgatctcgaagagttgttgtgggcttttgcaactgttact 51113896  T

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Target: chr3; HSP #2
Raw Score: 66; E-Value: 6e-29
Query Start/End: Original strand, 364 - 489
Target Start/End: Original strand, 51120875 - 51121000
Alignment:
Q  364 tcaaaagtgaaactgcatggagtgaactttgaagctcccaaactggaggtgttgaacttgtcacatacatgagttgataacgaagaacgctatctgattt 463  Q
    |||| |||||||||||||||| |||||||||||| || |||| ||||||||||||||||||| |||||| |||||||| | ||| |||  ||| | || |    
T  51120875 tcaagagtgaaactgcatggaatgaactttgaagttctcaaattggaggtgttgaacttgtcgcatacaagagttgatgatgaaaaactatatgtaatct 51120974  T
Q  464 caaagagttgtcgtgggcttttgcaa 489  Q
    ||||||||||||||||||||||||||    
T  51120975 caaagagttgtcgtgggcttttgcaa 51121000  T

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Target: chr3; HSP #3
Raw Score: 43; E-Value: 0.000000000000003
Query Start/End: Original strand, 327 - 497
Target Start/End: Original strand, 13470677 - 13470847
Alignment:
Q  327 atgttgtaaacttaggcatttgaacttagctcactgctcaaaagtgaaactgcatggagtgaactttgaagctcccaaactggaggtgttgaacttgtca 426  Q
    |||||||||  |||||||||||||||||||  | ||   ||||||||| || | |||| |||||||||  | |||||| |||||||||||||||||||||    
T  13470677 atgttgtaagattaggcatttgaacttagcctattgtaaaaaagtgaagctacttggaatgaactttgttgttcccaatctggaggtgttgaacttgtca 13470776  T
Q  427 catacatgagttgataacgaagaacgctatctgatttcaaagagttgtcgtgggcttttgcaactgttact 497  Q
     |||||   ||| || |  ||  || |||| |||| ||||||| |||| |||||||||||||||| |||||    
T  13470777 aatacaaaggttaatgataaaacactctatatgatctcaaagaattgttgtgggcttttgcaactattact 13470847  T

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Target: chr3; HSP #4
Raw Score: 36; E-Value: 0.00000000005
Query Start/End: Original strand, 386 - 493
Target Start/End: Complemental strand, 1657346 - 1657239
Alignment:
Q  386 tgaactttgaagctcccaaactggaggtgttgaacttgtcacatacatgagttgataacgaagaacgctatctgatttcaaagagttgtcgtgggctttt 485  Q
    |||||||||||| ||||||||||||||||||| ||||||||  |||| ||||||| ||   |  || ||||  ||| |||||||||||  | ||||||||    
T  1657346 tgaactttgaagttcccaaactggaggtgttggacttgtcatttacaagagttgacaatatatcactctattggatctcaaagagttgcagcgggctttt 1657247  T
Q  486 gcaactgt 493  Q
    ||||||||    
T  1657246 gcaactgt 1657239  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #5
Raw Score: 31; E-Value: 0.00000005
Query Start/End: Original strand, 401 - 443
Target Start/End: Original strand, 27005791 - 27005833
Alignment:
Q  401 ccaaactggaggtgttgaacttgtcacatacatgagttgataa 443  Q
    ||||||||||||| |||||||||||||||||| || |||||||    
T  27005791 ccaaactggaggtcttgaacttgtcacatacaagaattgataa 27005833  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #6
Raw Score: 31; E-Value: 0.00000005
Query Start/End: Original strand, 393 - 443
Target Start/End: Original strand, 36811038 - 36811088
Alignment:
Q  393 tgaagctcccaaactggaggtgttgaacttgtcacatacatgagttgataa 443  Q
    ||||||| ||||||||||||||||||||||||| ||| || || |||||||    
T  36811038 tgaagcttccaaactggaggtgttgaacttgtcccattcaagaattgataa 36811088  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #7
Raw Score: 29; E-Value: 0.0000007
Query Start/End: Original strand, 338 - 374
Target Start/End: Original strand, 514684 - 514720
Alignment:
Q  338 ttaggcatttgaacttagctcactgctcaaaagtgaa 374  Q
    ||||||||||||||||||| |||||||||| ||||||    
T  514684 ttaggcatttgaacttagcccactgctcaagagtgaa 514720  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2 (Bit Score: 47; Significance: 1e-17; HSPs: 3)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 47; E-Value: 1e-17
Query Start/End: Original strand, 386 - 496
Target Start/End: Original strand, 32785776 - 32785886
Alignment:
Q  386 tgaactttgaagctcccaaactggaggtgttgaacttgtcacatacatgagttgataacgaagaacgctatctgatttcaaagagttgtcgtgggctttt 485  Q
    |||||||| ||||||||||||| |||||||||||||||||||||||| || ||||| | |||| ||  ||| |||| ||||  |||| || |||||||||    
T  32785776 tgaactttaaagctcccaaactagaggtgttgaacttgtcacatacaagaattgatgatgaagcactttatgtgatctcaataagttttcatgggctttt 32785875  T
Q  486 gcaactgttac 496  Q
    | |||||||||    
T  32785876 gaaactgttac 32785886  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #2
Raw Score: 42; E-Value: 0.00000000000001
Query Start/End: Original strand, 325 - 494
Target Start/End: Original strand, 1037607 - 1037776
Alignment:
Q  325 agatgttgtaaacttaggcatttgaacttagctcactgctcaaaagtgaaactgcatggagtgaactttgaagctcccaaactggaggtgttgaacttgt 424  Q
    |||||||||||  |||| |||||||| |||||  |||  |||| ||||||||| | | || | |||||| ||| |||  || | |||||||| |||||||    
T  1037607 agatgttgtaaggttagacatttgaatttagcctactattcaagagtgaaactacttagaataaactttaaagttcctgaattagaggtgtttaacttgt 1037706  T
Q  425 cacatacatgagttgataacgaagaacgctatctgatttcaaagagttgtcgtgggcttttgcaactgtt 494  Q
    |||||||||| |||||| | |||  || |||| |||| ||||||| |||| |||||||||| ||||||||    
T  1037707 cacatacatgtgttgatgatgaaacactctatatgatctcaaagaattgttgtgggcttttacaactgtt 1037776  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #3
Raw Score: 39; E-Value: 0.0000000000008
Query Start/End: Original strand, 325 - 491
Target Start/End: Original strand, 45245028 - 45245194
Alignment:
Q  325 agatgttgtaaacttaggcatttgaacttagctcactgctcaaaagtgaaactgcatggagtgaactttgaagctcccaaactggaggtgttgaacttgt 424  Q
    |||||||||||  |||||||||| ||||||| |  ||| |||| | || || | | |||| | |||||||||| ||| ||||| ||||||||||| ||||    
T  45245028 agatgttgtaacattaggcatttaaacttagtttgctgttcaagactggaattacgtggaataaactttgaagttccaaaacttgaggtgttgaatttgt 45245127  T
Q  425 cacatacatgagttgataacgaagaacgctatctgatttcaaagagttgtcgtgggcttttgcaact 491  Q
    || | |||   |||||| | |||  || | || |||| |||||||||||||||||||||||||||||    
T  45245128 cagagacaatggttgatgatgaaacactccatgtgatctcaaagagttgtcgtgggcttttgcaact 45245194  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1 (Bit Score: 47; Significance: 1e-17; HSPs: 2)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 47; E-Value: 1e-17
Query Start/End: Original strand, 338 - 432
Target Start/End: Original strand, 19468455 - 19468549
Alignment:
Q  338 ttaggcatttgaacttagctcactgctcaaaagtgaaactgcatggagtgaactttgaagctcccaaactggaggtgttgaacttgtcacataca 432  Q
    |||||||||| |||||||| ||||| |||| |||||| || | |||||||||||||| || |||||| |||||||||||||| |||||| |||||    
T  19468455 ttaggcatttaaacttagcccactgttcaagagtgaatctacttggagtgaactttgtagttcccaagctggaggtgttgaagttgtcagataca 19468549  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #2
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 415 - 502
Target Start/End: Complemental strand, 7554554 - 7554467
Alignment:
Q  415 ttgaacttgtcacatacatgagttgataacgaagaacgctatctgatttcaaagagttgtcgtgggcttttgcaactgttactaaaag 502  Q
    |||||||| ||| ||||| | |||||| | |||| || |||| |||| |||||||||||| |||| ||||| ||||||||||| ||||    
T  7554554 ttgaacttatcatatacaagtgttgatgatgaagcactctatatgatctcaaagagttgtggtggacttttacaactgttactgaaag 7554467  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5 (Bit Score: 46; Significance: 5e-17; HSPs: 3)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 46; E-Value: 5e-17
Query Start/End: Original strand, 327 - 486
Target Start/End: Complemental strand, 32267626 - 32267470
Alignment:
Q  327 atgttgtaaacttaggcatttgaacttagctcactgctcaaaagtgaaactgcatggagtgaactttgaagctcccaaactggaggtgttgaacttgtca 426  Q
    |||||||||  |||| |||||||||||| | || || |||| |||||||||  |   | |||||||||||| ||||||| ||||||| ||||||||||||    
T  32267626 atgttgtaacattagacatttgaacttatcccagtgttcaacagtgaaactaga---aatgaactttgaagttcccaaattggaggtattgaacttgtca 32267530  T
Q  427 catacatgagttgataacgaagaacgctatctgatttcaaagagttgtcgtgggcttttg 486  Q
    || |||  ||||||| | |||| ||  ||| |||| |||||||||||| |||||||||||    
T  32267529 caaacaatagttgatgatgaagcactttatatgatctcaaagagttgttgtgggcttttg 32267470  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #2
Raw Score: 46; E-Value: 5e-17
Query Start/End: Original strand, 389 - 486
Target Start/End: Original strand, 41901542 - 41901639
Alignment:
Q  389 actttgaagctcccaaactggaggtgttgaacttgtcacatacatgagttgataacgaagaacgctatctgatttcaaagagttgtcgtgggcttttg 486  Q
    ||||||||| |||||||||||||||||||||||||||| |||||  ||||||| | |||| ||  ||| |||| |||||||||||| |||| ||||||    
T  41901542 actttgaagttcccaaactggaggtgttgaacttgtcatatacaaaagttgatgatgaagcactttatatgatctcaaagagttgttgtggacttttg 41901639  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #3
Raw Score: 31; E-Value: 0.00000005
Query Start/End: Original strand, 389 - 491
Target Start/End: Complemental strand, 37937979 - 37937877
Alignment:
Q  389 actttgaagctcccaaactggaggtgttgaacttgtcacatacatgagttgataacgaagaacgctatctgatttcaaagagttgtcgtgggcttttgca 488  Q
    ||||||||| |||||| || ||||||||| ||||| |||||||| || ||||| |  ||  || |||| | || |||||||  |||||||||||||||||    
T  37937979 actttgaagttcccaaccttgaggtgttggacttgacacatacaagaattgatgatcaaacactctatgtaatctcaaagatgtgtcgtgggcttttgca 37937880  T
Q  489 act 491  Q
    |||    
T  37937879 act 37937877  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7 (Bit Score: 33; Significance: 0.000000003; HSPs: 2)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 33; E-Value: 0.000000003
Query Start/End: Original strand, 327 - 431
Target Start/End: Complemental strand, 10614747 - 10614643
Alignment:
Q  327 atgttgtaaacttaggcatttgaacttagctcactgctcaaaagtgaaactgcatggagtgaactttgaagctcccaaactggaggtgttgaacttgtca 426  Q
    |||||||||  |||||||||||||||||||  | ||   ||||||||| || | |||| ||||| |||  | |||||| |||||||||||||||||||||    
T  10614747 atgttgtaagattaggcatttgaacttagcctattgtaaaaaagtgaagctacttggaatgaacgttgttgttcccaatctggaggtgttgaacttgtca 10614648  T
Q  427 catac 431  Q
     ||||    
T  10614647 aatac 10614643  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #2
Raw Score: 29; E-Value: 0.0000007
Query Start/End: Original strand, 370 - 426
Target Start/End: Original strand, 15092139 - 15092195
Alignment:
Q  370 gtgaaactgcatggagtgaactttgaagctcccaaactggaggtgttgaacttgtca 426  Q
    |||||||| |||||| ||||||||| || |||| | |||||||||||||| ||||||    
T  15092139 gtgaaactacatggaatgaactttgcagttcccgagctggaggtgttgaatttgtca 15092195  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0295 (Bit Score: 29; Significance: 0.0000007; HSPs: 1)
Name: scaffold0295
Description:

Target: scaffold0295; HSP #1
Raw Score: 29; E-Value: 0.0000007
Query Start/End: Original strand, 325 - 497
Target Start/End: Original strand, 567 - 739
Alignment:
Q  325 agatgttgtaaacttaggcatttgaacttagctcactgctcaaaagtgaaactgcatggagtgaactttgaagctcccaaactggaggtgttgaacttgt 424  Q
    |||||||||||   ||| |||||||| |||||  |||| |||| ||||||||| | | || | |||||| ||| |||  || | |||||||| |||||||    
T  567 agatgttgtaaggctagacatttgaatttagcctactgttcaagagtgaaactacttagaataaactttaaagttcctgaattagaggtgtttaacttgt 666  T
Q  425 cacatacatgagttgataacgaagaacgctatctgatttcaaagagttgtcgtgggcttttgcaactgttact 497  Q
    |||||||| | || ||| | |||  || |||| |||| || |||| |||| ||||||| || |||||||||||    
T  667 cacatacaagtgtcgatgatgaaacactctatatgatctcgaagaattgttgtgggctattacaactgttact 739  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]



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