View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF4092_low_2 (Length: 382)
Name: NF4092_low_2
Description: NF4092
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF4092_low_2 |
 | |
|
Alignment Details
Target: chr4 (Bit Score: 150; Significance: 3e-79; HSPs: 2)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 150; E-Value: 3e-79
Query Start/End: Original strand, 7 - 168
Target Start/End: Original strand, 36545140 - 36545301
Alignment:
| Q |
7 |
gtgagatgaaatgaaaccgctgttataatgttttggtacaaatccaacgttacgcacacactgtctcactgaatttcatgctacatggaatagaagaatc |
106 |
Q |
| |
|
|||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
36545140 |
gtgaaatgaaatgaaaccgctgttataatgttttggtacaaatccaacgttacgcacacactgtctcactgaatttcatgctacatggaatagaagaatc |
36545239 |
T |
|
| Q |
107 |
atttgcattctcctcattatcaacattaatatatggttctctctctctttctccttttatta |
168 |
Q |
| |
|
|||||||||||||||||||||||| ||||||||||||||| ||||||||||||||||||||| |
|
|
| T |
36545240 |
atttgcattctcctcattatcaaccttaatatatggttctgtctctctttctccttttatta |
36545301 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #2
Raw Score: 96; E-Value: 5e-47
Query Start/End: Original strand, 266 - 365
Target Start/End: Original strand, 36545400 - 36545499
Alignment:
| Q |
266 |
gtagatgttctatttgtgtatgtgtttcatttatgtgacaatgatcgtagaaaagggtcttgtggaaaatgttcctttcccaattttaaggaaacaacgt |
365 |
Q |
| |
|
||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
36545400 |
gtagatgttctatatgtgtatgtgtttcatttatgtgacaatgatcgtagaaaagggtcttgtggaaaatgttcctttcccaattttaaggaaacaacgt |
36545499 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
© Oklahoma State University