View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF4092_low_5 (Length: 250)
Name: NF4092_low_5
Description: NF4092
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF4092_low_5 |
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Alignment Details
Target: chr6 (Bit Score: 231; Significance: 1e-127; HSPs: 4)
Name: chr6
Description:
Target: chr6; HSP #1
Raw Score: 231; E-Value: 1e-127
Query Start/End: Original strand, 1 - 235
Target Start/End: Complemental strand, 24707586 - 24707352
Alignment:
| Q |
1 |
tattttgagcctgtaagaatctgttgaggcattgtagaagaccatacgcaaaaagggatggaaccattaacctagcatagttgccagcttctatagatat |
100 |
Q |
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| T |
24707586 |
tattttgagcctgtaagaatctgttgaggcattgtagaagaccatacgcaaaaagggatggaaccattaacctagcatagttgccagcttctatagatat |
24707487 |
T |
|
| Q |
101 |
ttcaggatcttggccaagtaaaataagaatagattttgtgtttgcccaaataatcgcgaggggaatcgcaacgatcataagaatgaacattgctctctgc |
200 |
Q |
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||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
24707486 |
ttcaggatcttggccaagtaaaataagaatagattttgtgtttgcccaaataaccgcgaggggaatcgcaacgatcataagaatgaacattgctctctgc |
24707387 |
T |
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| Q |
201 |
atgtgtacgcctaacatgcggtattgttttgcgcc |
235 |
Q |
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| T |
24707386 |
atgtgtacgcctaacatgcggtattgttttgcgcc |
24707352 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #2
Raw Score: 167; E-Value: 1e-89
Query Start/End: Original strand, 1 - 235
Target Start/End: Original strand, 30512199 - 30512433
Alignment:
| Q |
1 |
tattttgagcctgtaagaatctgttgaggcattgtagaagaccatacgcaaaaagggatggaaccattaacctagcatagttgccagcttctatagatat |
100 |
Q |
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||||||||| |||||||||||||||||||||||||||||||||||| ||||||||| |||||||||||||| | |||||| ||||||| ||||||||||| |
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| T |
30512199 |
tattttgagtctgtaagaatctgttgaggcattgtagaagaccataagcaaaaaggcatggaaccattaactttgcatagctgccagcctctatagatat |
30512298 |
T |
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| Q |
101 |
ttcaggatcttggccaagtaaaataagaatagattttgtgtttgcccaaataatcgcgaggggaatcgcaacgatcataagaatgaacattgctctctgc |
200 |
Q |
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| T |
30512299 |
ttcaggatcttggccaagcacaaggagaattgatcttgtgtttgcccaaataaccgcgaggggaatcgcaacgaccatgagaatgaacattgctctctgc |
30512398 |
T |
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| Q |
201 |
atgtgtacgcctaacatgcggtattgttttgcgcc |
235 |
Q |
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||||||||||||||||||||||||||||| ||||| |
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| T |
30512399 |
atgtgtacgcctaacatgcggtattgtttcgcgcc |
30512433 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #3
Raw Score: 143; E-Value: 3e-75
Query Start/End: Original strand, 1 - 235
Target Start/End: Original strand, 30484740 - 30484974
Alignment:
| Q |
1 |
tattttgagcctgtaagaatctgttgaggcattgtagaagaccatacgcaaaaagggatggaaccattaacctagcatagttgccagcttctatagatat |
100 |
Q |
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||||||||| |||||||||||||||||| |||||||||||||| || ||||||||| | |||||||||||| |||||||| | |||||||| ||||||| |
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| T |
30484740 |
tattttgagtctgtaagaatctgttgagacattgtagaagaccgtaagcaaaaaggcagggaaccattaacttagcatagcttccagcttcagtagatat |
30484839 |
T |
|
| Q |
101 |
ttcaggatcttggccaagtaaaataagaatagattttgtgtttgcccaaataatcgcgaggggaatcgcaacgatcataagaatgaacattgctctctgc |
200 |
Q |
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|||| ||||||||||||||||||| ||||| ||| ||||||||||||| ||||||||||||||||| || |||||||| ||||||||||||||||| ||| |
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| T |
30484840 |
ttcaagatcttggccaagtaaaatcagaatggatcttgtgtttgcccagataatcgcgaggggaatggcgacgatcatgagaatgaacattgctctttgc |
30484939 |
T |
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| Q |
201 |
atgtgtacgcctaacatgcggtattgttttgcgcc |
235 |
Q |
| |
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||||||| ||||||||||||||| || |||||||| |
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| T |
30484940 |
atgtgtatgcctaacatgcggtactgctttgcgcc |
30484974 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #4
Raw Score: 135; E-Value: 2e-70
Query Start/End: Original strand, 1 - 235
Target Start/End: Original strand, 30502552 - 30502786
Alignment:
| Q |
1 |
tattttgagcctgtaagaatctgttgaggcattgtagaagaccatacgcaaaaagggatggaaccattaacctagcatagttgccagcttctatagatat |
100 |
Q |
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|
||||||||| |||||||||||||||||||||||||| |||||||| |||||||||||||||||||||||| |||||||||||||||| || |||||||| |
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| T |
30502552 |
tattttgagtttgtaagaatctgttgaggcattgtaggagaccataagcaaaaagggatggaaccattaacttagcatagttgccagcctccatagatat |
30502651 |
T |
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| Q |
101 |
ttcaggatcttggccaagtaaaataagaatagattttgtgtttgcccaaataatcgcgaggggaatcgcaacgatcataagaatgaacattgctctctgc |
200 |
Q |
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||| ||||||| ||||| ||||| ||||| ||| | ||||||||||||||||| ||||| ||||||||||| ||||| ||||||||||| ||||| ||| |
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| T |
30502652 |
ttcgtgatcttgtccaaggaaaatgagaatggatctagtgtttgcccaaataatagcgagaggaatcgcaacaatcatgagaatgaacatggctctttgc |
30502751 |
T |
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| Q |
201 |
atgtgtacgcctaacatgcggtattgttttgcgcc |
235 |
Q |
| |
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||||||| ||||| ||||||||| || |||||||| |
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| T |
30502752 |
atgtgtatgcctagcatgcggtactgctttgcgcc |
30502786 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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