View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF4093_high_3 (Length: 437)
Name: NF4093_high_3
Description: NF4093
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF4093_high_3 |
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Alignment Details
Target: chr3 (Bit Score: 343; Significance: 0; HSPs: 1)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 343; E-Value: 0
Query Start/End: Original strand, 16 - 436
Target Start/End: Complemental strand, 24425321 - 24424885
Alignment:
| Q |
16 |
cagttgagtgggagtataattggtttaaaacaaatcatgtcctctgcactgaaaaattaaatatgaaattgtatcattaactgtatctaaatgttgaaca |
115 |
Q |
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| T |
24425321 |
cagttgagtgggagtataattggtttaaaacaaatcatgtcctctgcactgaaaaattaaatatgaaattgtatcattaactgtatctaaatgttgaaca |
24425222 |
T |
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| Q |
116 |
tcatcagtttttgtatcataaaagtactttccagtcacatgctttttctcttgcaaaactaaatttttccaataacaatccctaagaatgatgaatcttt |
215 |
Q |
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| T |
24425221 |
tcatcaatttttgtatcataaaagtactttccagtcacatgctttttctcttgcaaaactaaatttttccaataacaatccctaagaatgatgaatcttt |
24425122 |
T |
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| Q |
216 |
gattcttcaattatatttctgat----------------tnnnnnnntattattaattctcttaatgacctacttcgacaatgagcttgaatgaatatat |
299 |
Q |
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| T |
24425121 |
cattcttcaattatatttctgattatgtttactttacattaaaaatatattattaattcttttaatgacttacttcgacaatgagcttgaatgaatatat |
24425022 |
T |
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| Q |
300 |
gatattgataagcatgatgaaaattgttcttacatttttcgagtcactctccagataaccaatctgaggaatcaaagaatacaccttccccatcatccgt |
399 |
Q |
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||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||| |
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| T |
24425021 |
gatattgataagcatgatgaaaattgttcttacatttttcgagtcactctccagataactaatctgaggaatcaaagaatacaccttccccatcatccgt |
24424922 |
T |
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| Q |
400 |
gtcatcagaatcagataatacaactccctgcatcatc |
436 |
Q |
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| T |
24424921 |
gtcatcagaatcagataatacaactccctgcatcatc |
24424885 |
T |
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