View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF4093_high_6 (Length: 357)
Name: NF4093_high_6
Description: NF4093
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF4093_high_6 |
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Alignment Details
Target: chr4 (Bit Score: 294; Significance: 1e-165; HSPs: 1)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 294; E-Value: 1e-165
Query Start/End: Original strand, 37 - 342
Target Start/End: Complemental strand, 758673 - 758369
Alignment:
| Q |
37 |
tcacacctaccaagtaatatatattttcttttctttttgattcctcttgttgatctgttttagtttatcacttcttatttcattcttctcatgaacatta |
136 |
Q |
| |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
758673 |
tcacacctaccaagtaatatatattttcttttctttttgattcctcttgttgatctgttttagtttatcacttcttatttcattcttctcatgaacatta |
758574 |
T |
|
| Q |
137 |
agattctagcataaatacatgttggaatgattgattaatttaattaatttgattagcataactaagatctagcctccatgagtcatcataattaatatat |
236 |
Q |
| |
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|||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
758573 |
agattctagcataaatacatgttggaatgattgattaatt-aattaatttgattagcataactaagatctagcctccatgagtcatcataattaatatat |
758475 |
T |
|
| Q |
237 |
taattattaacaacaaccttaatcattacaatttgtgatatcattaccaataacatactacaacacatccccctaatttattttgttaagaaaccaaagt |
336 |
Q |
| |
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||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
758474 |
taattatcaacaacaaccttaatcattacaatttgtgatatcattaccaataacatactacaacacatccccctaatttattttgttaagaaaccaaagt |
758375 |
T |
|
| Q |
337 |
gagaaa |
342 |
Q |
| |
|
|||||| |
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|
| T |
758374 |
gagaaa |
758369 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3 (Bit Score: 276; Significance: 1e-154; HSPs: 4)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 276; E-Value: 1e-154
Query Start/End: Original strand, 39 - 342
Target Start/End: Original strand, 36988700 - 36989002
Alignment:
| Q |
39 |
acacctaccaagtaatatatattttcttttctttttgattcctcttgttgatctgttttagtttatcacttcttatttcattcttctcatgaacattaag |
138 |
Q |
| |
|
||||||||||||||||||||||||| |||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
36988700 |
acacctaccaagtaatatatattttattttctttttaattcctcttgttgatctgttttagtttatcacttcttatttcattcttctcatgaacattaag |
36988799 |
T |
|
| Q |
139 |
attctagcataaatacatgttggaatgattgattaatttaattaatttgattagcataactaagatctagcctccatgagtcatcataattaatatatta |
238 |
Q |
| |
|
|||||||||||||||||||||||||| ||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
36988800 |
attctagcataaatacatgttggaataattgattaatt-aattaatttgattagcataactaagatctagcctccatgagtcatcataattaatatatta |
36988898 |
T |
|
| Q |
239 |
attattaacaacaaccttaatcattacaatttgtgatatcattaccaataacatactacaacacatccccctaatttattttgttaagaaaccaaagtga |
338 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||| ||||||||||||||||||||| |
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| T |
36988899 |
attattaacaacaaccttaatcattacaatttgtgatatcattaccaataacatactacaacacatccccgtaatttaatttgttaagaaaccaaagtga |
36988998 |
T |
|
| Q |
339 |
gaaa |
342 |
Q |
| |
|
|||| |
|
|
| T |
36988999 |
gaaa |
36989002 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #2
Raw Score: 276; E-Value: 1e-154
Query Start/End: Original strand, 39 - 342
Target Start/End: Original strand, 37014139 - 37014441
Alignment:
| Q |
39 |
acacctaccaagtaatatatattttcttttctttttgattcctcttgttgatctgttttagtttatcacttcttatttcattcttctcatgaacattaag |
138 |
Q |
| |
|
||||||||||||||||||||||||| |||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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|
| T |
37014139 |
acacctaccaagtaatatatattttattttctttttaattcctcttgttgatctgttttagtttatcacttcttatttcattcttctcatgaacattaag |
37014238 |
T |
|
| Q |
139 |
attctagcataaatacatgttggaatgattgattaatttaattaatttgattagcataactaagatctagcctccatgagtcatcataattaatatatta |
238 |
Q |
| |
|
|||||||||||||||||||||||||| ||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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|
| T |
37014239 |
attctagcataaatacatgttggaataattgattaatt-aattaatttgattagcataactaagatctagcctccatgagtcatcataattaatatatta |
37014337 |
T |
|
| Q |
239 |
attattaacaacaaccttaatcattacaatttgtgatatcattaccaataacatactacaacacatccccctaatttattttgttaagaaaccaaagtga |
338 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||| ||||||||||||||||||||| |
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|
| T |
37014338 |
attattaacaacaaccttaatcattacaatttgtgatatcattaccaataacatactacaacacatccccgtaatttaatttgttaagaaaccaaagtga |
37014437 |
T |
|
| Q |
339 |
gaaa |
342 |
Q |
| |
|
|||| |
|
|
| T |
37014438 |
gaaa |
37014441 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #3
Raw Score: 47; E-Value: 9e-18
Query Start/End: Original strand, 235 - 289
Target Start/End: Complemental strand, 36443693 - 36443639
Alignment:
| Q |
235 |
attaattattaacaacaaccttaatcattacaatttgtgatatcattaccaataa |
289 |
Q |
| |
|
||||||||||||||||||||||| | ||||||||||||||||||||||||||||| |
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|
| T |
36443693 |
attaattattaacaacaaccttagttattacaatttgtgatatcattaccaataa |
36443639 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #4
Raw Score: 43; E-Value: 0.000000000000002
Query Start/End: Original strand, 51 - 121
Target Start/End: Complemental strand, 36443880 - 36443810
Alignment:
| Q |
51 |
taatatatattttcttttctttttgattcctcttgttgatctgttttagtttatcacttcttatttcattc |
121 |
Q |
| |
|
||||||||||||||| |||||||| ||||| |||||||| ||| |||||||||||||||||| ||||||| |
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|
| T |
36443880 |
taatatatattttctcttctttttaattccctttgttgatttgtcttagtttatcacttcttacttcattc |
36443810 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2 (Bit Score: 97; Significance: 1e-47; HSPs: 1)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 97; E-Value: 1e-47
Query Start/End: Original strand, 40 - 156
Target Start/End: Complemental strand, 19181049 - 19180933
Alignment:
| Q |
40 |
cacctaccaagtaatatatattttcttttctttttgattcctcttgttgatctgttttagtttatcacttcttatttcattcttctcatgaacattaaga |
139 |
Q |
| |
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||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||| ||||||||||||| ||||||||||||||||||| ||||| |
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| T |
19181049 |
cacctaccaagtaatatatattttcttttctttttaattcctcttgttgatctgttttagattatcacttcttacttcattcttctcatgaacactaaga |
19180950 |
T |
|
| Q |
140 |
ttctagcataaatacat |
156 |
Q |
| |
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|||||||||| |||||| |
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|
| T |
19180949 |
ttctagcatacatacat |
19180933 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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