View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF4093_high_7 (Length: 333)
Name: NF4093_high_7
Description: NF4093
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF4093_high_7 |
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Alignment Details
Target: chr5 (Bit Score: 280; Significance: 1e-157; HSPs: 3)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 280; E-Value: 1e-157
Query Start/End: Original strand, 9 - 307
Target Start/End: Complemental strand, 1794827 - 1794528
Alignment:
| Q |
9 |
tgaagggagtgtcaatagcagtattggcagtgttgtttctaagaaacattaagggg-tctaaaaagaactatattcatcaatgacgctcctttgtattca |
107 |
Q |
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| T |
1794827 |
tgaagggagtgtcaatagcagtattggcagtgttgtttctaagaaacattaagggggtctaaaaagaactatattcatcaatgacgctcctttgtattca |
1794728 |
T |
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| Q |
108 |
cctaacatgtggatgcaaattttcggatttcaatttggtgaatacgagaattatcataataatgttttagagttgagtgaatgggaaaaattcagtacgg |
207 |
Q |
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| T |
1794727 |
cctaacatgtggatgcaaattttcggatttcaatttggtgaatatgagaattatcataataatgttttagagttgagtgaatgggaaaaattcagtacgg |
1794628 |
T |
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| Q |
208 |
gtcattctgagactaatggttcactcatgaactatattataaatagtactatatagttttgcttcattgaatcagtctttcttttatatttgatgttccg |
307 |
Q |
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| T |
1794627 |
gtcattctgagactaatggttcattcatgaactatattataaatagtactatatcgttttgcttcattgaatcagtctttcttttatatttgatgttccg |
1794528 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #2
Raw Score: 100; E-Value: 2e-49
Query Start/End: Original strand, 93 - 286
Target Start/End: Complemental strand, 1811603 - 1811408
Alignment:
| Q |
93 |
gctcctttgtattcacctaacatgtggatgcaaattttcggatttcaatttggtgaatacgagaattatcataataatg-ttttagagttgagtgaatgg |
191 |
Q |
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| T |
1811603 |
gctcctttggattcacctaacatgtggatgcaaatttttggatttcaatttgatgaatatgggagttatcaaaataatgtttttagagttgagtgaatgg |
1811504 |
T |
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| Q |
192 |
gaa-aaattcagtacgggtcattctgagactaatggttcactcatgaactatattataaatagtactatatagttttgcttcattgaatcagtctt |
286 |
Q |
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| T |
1811503 |
gaagaaatccattatgagtcattttggaactaatgcctcactcatgaattatattataaatagtactaaatcattttgcttcattgaatcagtctt |
1811408 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #3
Raw Score: 87; E-Value: 1e-41
Query Start/End: Original strand, 84 - 249
Target Start/End: Complemental strand, 1814757 - 1814591
Alignment:
| Q |
84 |
atcaatgacgctcctttgtattcacctaacatgtggatgcaaattttcggatttcaatttggtgaatacgagaattatcataataatgttttagagttga |
183 |
Q |
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| T |
1814757 |
atcaatgaggctcctttggattcacctaaaatgtggatgcaaatgtttggatttcaatttgatgaatataggaattatgataataatgttttagagttga |
1814658 |
T |
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| Q |
184 |
gtgaatgggaa-aaattcagtacgggtcattctgagactaatggttcactcatgaactatattataa |
249 |
Q |
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| T |
1814657 |
gtgaatgggaagaaattcagtatgagtcattgtgggactagtgattcaatcatgaactataatataa |
1814591 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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