View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF4093_low_13 (Length: 249)

Name: NF4093_low_13
Description: NF4093
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF4093_low_13
NF4093_low_13
[»] chr3 (5 HSPs)
chr3 (1-229)||(52064367-52064594)
chr3 (58-101)||(1395626-1395669)
chr3 (58-108)||(31053155-31053205)
chr3 (60-110)||(32555044-32555094)
chr3 (58-98)||(25195379-25195419)
[»] chr4 (4 HSPs)
chr4 (40-110)||(4071819-4071889)
chr4 (64-107)||(29194469-29194512)
chr4 (63-100)||(11917519-11917556)
chr4 (58-110)||(49219094-49219146)
[»] chr7 (3 HSPs)
chr7 (58-109)||(30456514-30456565)
chr7 (58-98)||(12835012-12835052)
chr7 (58-102)||(39591538-39591582)
[»] chr5 (4 HSPs)
chr5 (40-110)||(35135725-35135796)
chr5 (58-102)||(37063145-37063189)
chr5 (63-99)||(38047929-38047965)
chr5 (63-107)||(39750103-39750147)
[»] chr1 (5 HSPs)
chr1 (58-101)||(27738252-27738295)
chr1 (63-101)||(28467379-28467417)
chr1 (63-108)||(40304119-40304164)
chr1 (63-100)||(47877082-47877119)
chr1 (58-110)||(29007779-29007831)
[»] chr6 (2 HSPs)
chr6 (58-108)||(24782014-24782064)
chr6 (58-110)||(10452423-10452475)
[»] chr2 (4 HSPs)
chr2 (60-110)||(11513855-11513905)
chr2 (66-108)||(35539686-35539728)
chr2 (58-99)||(40837502-40837543)
chr2 (63-107)||(28933784-28933828)


Alignment Details
Target: chr3 (Bit Score: 207; Significance: 1e-113; HSPs: 5)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 207; E-Value: 1e-113
Query Start/End: Original strand, 1 - 229
Target Start/End: Complemental strand, 52064594 - 52064367
Alignment:
Q  1 cttatagctagcataaacagttaaaaacttatcatacactgtttatgcataaatatgtctacaacaaaagataaattaaaatcaaattattttcatataa 100  Q
    |||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  52064594 cttatagctagcataaacagttaaaaacttatcatacactatttatgcataaatatgtctacaacaaaagataaattaaaatcaaattattttcatataa 52064495  T
Q  101 gtcataagttctctctcaaacagccttacaagtgtttgat-ggaaataattggatggtgtggacatgcagattccattatatggcaatggcggataatag 199  Q
    |||||||||||  ||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  52064494 gtcataagttc--tctcaaacagccttacaagtgtttgatgggaaataattggatggtgtggacatgcagattccattatatggcaatggcggataatag 52064397  T
Q  200 acagaggaatatgcctcttccagatgacag 229  Q
    ||||||||||||||||||||||||||||||    
T  52064396 acagaggaatatgcctcttccagatgacag 52064367  T

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Target: chr3; HSP #2
Raw Score: 32; E-Value: 0.000000005
Query Start/End: Original strand, 58 - 101
Target Start/End: Original strand, 1395626 - 1395669
Alignment:
Q  58 tctacaacaaaagataaattaaaatcaaattattttcatataag 101  Q
    |||| ||||||||||||| |||| ||||||||||||||||||||    
T  1395626 tctataacaaaagataaaataaagtcaaattattttcatataag 1395669  T

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Target: chr3; HSP #3
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 58 - 108
Target Start/End: Complemental strand, 31053205 - 31053155
Alignment:
Q  58 tctacaacaaaagataaattaaaatcaaattattttcatataagtcataag 108  Q
    |||| ||||||||||||| ||||||||| |||||||| ||||||| |||||    
T  31053205 tctataacaaaagataaaataaaatcaatttattttcgtataagttataag 31053155  T

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Target: chr3; HSP #4
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 60 - 110
Target Start/End: Complemental strand, 32555094 - 32555044
Alignment:
Q  60 tacaacaaaagataaattaaaatcaaattattttcatataagtcataagtt 110  Q
    |||||||||||||||| |||| ||||||||||||| ||||||  |||||||    
T  32555094 tacaacaaaagataaaataaagtcaaattattttcctataagctataagtt 32555044  T

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Target: chr3; HSP #5
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 58 - 98
Target Start/End: Original strand, 25195379 - 25195419
Alignment:
Q  58 tctacaacaaaagataaattaaaatcaaattattttcatat 98  Q
    |||| ||||||||||||| |||| |||||||||||||||||    
T  25195379 tctataacaaaagataaaataaagtcaaattattttcatat 25195419  T

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Target: chr4 (Bit Score: 35; Significance: 0.00000000009; HSPs: 4)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 35; E-Value: 0.00000000009
Query Start/End: Original strand, 40 - 110
Target Start/End: Original strand, 4071819 - 4071889
Alignment:
Q  40 tgtttatgcataaatatgtctacaacaaaagataaattaaaatcaaattattttcatataagtcataagtt 110  Q
    |||||||  |||| ||| |||| ||||||||||||| |||| ||||||||||||||||||||  |||||||    
T  4071819 tgtttatatataactatttctataacaaaagataaaataaagtcaaattattttcatataagctataagtt 4071889  T

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Target: chr4; HSP #2
Raw Score: 32; E-Value: 0.000000005
Query Start/End: Original strand, 64 - 107
Target Start/End: Complemental strand, 29194512 - 29194469
Alignment:
Q  64 acaaaagataaattaaaatcaaattattttcatataagtcataa 107  Q
    |||||||||||| |||||||||| ||||||||||||||| ||||    
T  29194512 acaaaagataaaataaaatcaaactattttcatataagttataa 29194469  T

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Target: chr4; HSP #3
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 63 - 100
Target Start/End: Original strand, 11917519 - 11917556
Alignment:
Q  63 aacaaaagataaattaaaatcaaattattttcatataa 100  Q
    ||||||||||||| |||| |||||||||||||||||||    
T  11917519 aacaaaagataaaataaagtcaaattattttcatataa 11917556  T

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Target: chr4; HSP #4
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 58 - 110
Target Start/End: Original strand, 49219094 - 49219146
Alignment:
Q  58 tctacaacaaaagataaattaaaatcaaattattttcatataagtcataagtt 110  Q
    |||| ||||||| ||||| |||| ||||||||||||||||||||  |||||||    
T  49219094 tctataacaaaatataaaataaagtcaaattattttcatataagctataagtt 49219146  T

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Target: chr7 (Bit Score: 32; Significance: 0.000000005; HSPs: 3)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 32; E-Value: 0.000000005
Query Start/End: Original strand, 58 - 109
Target Start/End: Complemental strand, 30456565 - 30456514
Alignment:
Q  58 tctacaacaaaagataaattaaaatcaaattattttcatataagtcataagt 109  Q
    |||| ||||||||||||| |||| ||||||| ||||||||||||| ||||||    
T  30456565 tctaaaacaaaagataaaataaagtcaaattgttttcatataagttataagt 30456514  T

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Target: chr7; HSP #2
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 58 - 98
Target Start/End: Complemental strand, 12835052 - 12835012
Alignment:
Q  58 tctacaacaaaagataaattaaaatcaaattattttcatat 98  Q
    |||||||||||||||||| |||| ||||||| |||||||||    
T  12835052 tctacaacaaaagataaaataaagtcaaattgttttcatat 12835012  T

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Target: chr7; HSP #3
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 58 - 102
Target Start/End: Complemental strand, 39591582 - 39591538
Alignment:
Q  58 tctacaacaaaagataaattaaaatcaaattattttcatataagt 102  Q
    |||| ||||||||||||| |||| ||||||| |||||||||||||    
T  39591582 tctataacaaaagataaaataaagtcaaattgttttcatataagt 39591538  T

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Target: chr5 (Bit Score: 32; Significance: 0.000000005; HSPs: 4)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 32; E-Value: 0.000000005
Query Start/End: Original strand, 40 - 110
Target Start/End: Complemental strand, 35135796 - 35135725
Alignment:
Q  40 tgtttatgcataa-atatgtctacaacaaaagataaattaaaatcaaattattttcatataagtcataagtt 110  Q
    |||||||| |||| |||| |||| ||||||||||||| |||| ||||| ||||||||||||||  |||||||    
T  35135796 tgtttatgtataagatatttctataacaaaagataaaataaagtcaaactattttcatataagctataagtt 35135725  T

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Target: chr5; HSP #2
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 58 - 102
Target Start/End: Complemental strand, 37063189 - 37063145
Alignment:
Q  58 tctacaacaaaagataaattaaaatcaaattattttcatataagt 102  Q
    |||| ||||||||||||| |||| ||||| |||||||||||||||    
T  37063189 tctataacaaaagataaaataaagtcaaactattttcatataagt 37063145  T

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Target: chr5; HSP #3
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 63 - 99
Target Start/End: Complemental strand, 38047965 - 38047929
Alignment:
Q  63 aacaaaagataaattaaaatcaaattattttcatata 99  Q
    ||||||||||||| |||| ||||||||||||||||||    
T  38047965 aacaaaagataaaataaagtcaaattattttcatata 38047929  T

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Target: chr5; HSP #4
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 63 - 107
Target Start/End: Original strand, 39750103 - 39750147
Alignment:
Q  63 aacaaaagataaattaaaatcaaattattttcatataagtcataa 107  Q
    ||||||||||||| |||| ||||| ||||||||||||||| ||||    
T  39750103 aacaaaagataaaataaagtcaaactattttcatataagttataa 39750147  T

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Target: chr1 (Bit Score: 32; Significance: 0.000000005; HSPs: 5)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 32; E-Value: 0.000000005
Query Start/End: Original strand, 58 - 101
Target Start/End: Complemental strand, 27738295 - 27738252
Alignment:
Q  58 tctacaacaaaagataaattaaaatcaaattattttcatataag 101  Q
    |||||||||||||||||| |||| ||||||| ||||||||||||    
T  27738295 tctacaacaaaagataaaataaagtcaaattgttttcatataag 27738252  T

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Target: chr1; HSP #2
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 63 - 101
Target Start/End: Complemental strand, 28467417 - 28467379
Alignment:
Q  63 aacaaaagataaattaaaatcaaattattttcatataag 101  Q
    ||||||||||||| |||| ||||||||||||||||||||    
T  28467417 aacaaaagataaaataaagtcaaattattttcatataag 28467379  T

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Target: chr1; HSP #3
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 63 - 108
Target Start/End: Complemental strand, 40304164 - 40304119
Alignment:
Q  63 aacaaaagataaattaaaatcaaattattttcatataagtcataag 108  Q
    ||||||||||||| |||||||| ||| ||||||||||||| |||||    
T  40304164 aacaaaagataaaataaaatcacattgttttcatataagttataag 40304119  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #4
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 63 - 100
Target Start/End: Original strand, 47877082 - 47877119
Alignment:
Q  63 aacaaaagataaattaaaatcaaattattttcatataa 100  Q
    ||||||||||||| |||||||||||| |||||||||||    
T  47877082 aacaaaagataaaataaaatcaaattgttttcatataa 47877119  T

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Target: chr1; HSP #5
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 58 - 110
Target Start/End: Complemental strand, 29007831 - 29007779
Alignment:
Q  58 tctacaacaaaagataaattaaaatcaaattattttcatataagtcataagtt 110  Q
    |||| ||||||||| |||||||| ||||| ||||||||||||||  |||||||    
T  29007831 tctataacaaaagaaaaattaaagtcaaactattttcatataagctataagtt 29007779  T

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Target: chr6 (Bit Score: 31; Significance: 0.00000002; HSPs: 2)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 58 - 108
Target Start/End: Original strand, 24782014 - 24782064
Alignment:
Q  58 tctacaacaaaagataaattaaaatcaaattattttcatataagtcataag 108  Q
    |||| ||||||||||||| | |||||||||| ||||||||||||| |||||    
T  24782014 tctataacaaaagataaaatcaaatcaaattgttttcatataagttataag 24782064  T

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Target: chr6; HSP #2
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 58 - 110
Target Start/End: Complemental strand, 10452475 - 10452423
Alignment:
Q  58 tctacaacaaaagataaattaaaatcaaattattttcatataagtcataagtt 110  Q
    |||| ||||||| ||||| |||||||||| ||||||||||||||  |||||||    
T  10452475 tctataacaaaatataaaataaaatcaaactattttcatataagctataagtt 10452423  T

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Target: chr2 (Bit Score: 31; Significance: 0.00000002; HSPs: 4)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 60 - 110
Target Start/End: Original strand, 11513855 - 11513905
Alignment:
Q  60 tacaacaaaagataaattaaaatcaaattattttcatataagtcataagtt 110  Q
    |||||||||||||||| |||| ||||||| ||||||||||||  |||||||    
T  11513855 tacaacaaaagataaaataaagtcaaattgttttcatataagctataagtt 11513905  T

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Target: chr2; HSP #2
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 66 - 108
Target Start/End: Original strand, 35539686 - 35539728
Alignment:
Q  66 aaaagataaattaaaatcaaattattttcatataagtcataag 108  Q
    |||||||||| |||||||||| ||||||||||||||| |||||    
T  35539686 aaaagataaaataaaatcaaactattttcatataagttataag 35539728  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #3
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 58 - 99
Target Start/End: Complemental strand, 40837543 - 40837502
Alignment:
Q  58 tctacaacaaaagataaattaaaatcaaattattttcatata 99  Q
    |||| |||||||||||||||||| ||||||| ||||||||||    
T  40837543 tctataacaaaagataaattaaagtcaaattgttttcatata 40837502  T

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Target: chr2; HSP #4
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 63 - 107
Target Start/End: Original strand, 28933784 - 28933828
Alignment:
Q  63 aacaaaagataaattaaaatcaaattattttcatataagtcataa 107  Q
    ||||||||||||| | |||||||||||||||||| ||||| ||||    
T  28933784 aacaaaagataaaatcaaatcaaattattttcatttaagttataa 28933828  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]



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