View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF4093_low_3 (Length: 619)

Name: NF4093_low_3
Description: NF4093
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF4093_low_3
NF4093_low_3
[»] chr7 (5 HSPs)
chr7 (35-605)||(25854217-25854787)
chr7 (297-575)||(25871373-25871652)
chr7 (533-600)||(25871300-25871367)
chr7 (465-605)||(7220450-7220589)
chr7 (78-114)||(7982291-7982327)
[»] chr5 (4 HSPs)
chr5 (452-553)||(28034037-28034138)
chr5 (500-605)||(29794645-29794750)
chr5 (499-592)||(1517798-1517890)
chr5 (565-605)||(39162517-39162557)
[»] chr6 (1 HSPs)
chr6 (117-204)||(17251810-17251898)
[»] chr2 (1 HSPs)
chr2 (505-579)||(21375310-21375384)
[»] chr4 (1 HSPs)
chr4 (392-531)||(29171829-29171968)
[»] chr1 (1 HSPs)
chr1 (496-592)||(36496260-36496356)
[»] chr8 (1 HSPs)
chr8 (452-534)||(8247110-8247191)


Alignment Details
Target: chr7 (Bit Score: 504; Significance: 0; HSPs: 5)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 504; E-Value: 0
Query Start/End: Original strand, 35 - 605
Target Start/End: Complemental strand, 25854787 - 25854217
Alignment:
Q  35 tatcaaacaacgacgctacaacctataacatttttgcaaagttgagtttgatcaaaccactattttacgtgatatgtgatttacactagatttggtacag 134  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||     
T  25854787 tatcaaacaacgacgctacaacctataacatttttgcaaagttgagtttgatcaaaccactattttacgtgatatgtgatttacactagatttggtacaa 25854688  T
Q  135 caacattaactatttt-ctttcaaattaaataaattcagttttgtttctaatttttaaatcatctttatttagggatgagttgaccaatgaggaacatgt 233  Q
    |||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  25854687 caacattaactatttttctttcaaattaaataaattcagttttgtttctaatttttaaatcatctttatttagggatgagttgaccaatgaggaacatgt 25854588  T
Q  234 tttgacgtgcttttcgtaccattttacaaaagtgtgtatatgtttctctgtatataaggctaagtagtcaatctcttcgtaatccgagaggagcaacata 333  Q
    |||||||||||||||||| |||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||  ||||||||||||||||||    
T  25854587 tttgacgtgcttttcgtatcattttacaaaagtatgtatatgtttctctgtatataaggctaagtagtcaatctcttcgtggtccgagaggagcaacata 25854488  T
Q  334 tattagtgaaaaaccgcaaacgtgaatacaaatcaaatcccacttatagttcactactgctccaggtgggagagcgggttcctgcttcgtgtgctccagt 433  Q
    |||||||||||||||  || ||||||||| |||| ||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||    
T  25854487 tattagtgaaaaaccttaa-cgtgaataccaatccaatcccacttatagttcactactgctccaggtgggagagcgggttcctggttcgtgtgctccagt 25854389  T
Q  434 tctgattccaactcgtataaaatcacgattttgcccttaagatttgaacactttgaaggggtaacttgggttttttgcacaaccctaacccttttctctc 533  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||    
T  25854388 tctgattccaactcgtataaaatcacgattttgcccttaagatttgaacacattgaaggggtaacttgggttttttgcacaaccctaacccttttctctc 25854289  T
Q  534 ttctcatttccattttctctttgtatacgcagttttcaaccctaaatcctttcattcatcacatgttctctg 605  Q
    ||||||||||||||||||||||||||| || |||||||||||||||||||||||||||||||||||||||||    
T  25854288 ttctcatttccattttctctttgtataagccgttttcaaccctaaatcctttcattcatcacatgttctctg 25854217  T

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Target: chr7; HSP #2
Raw Score: 109; E-Value: 2e-54
Query Start/End: Original strand, 297 - 575
Target Start/End: Complemental strand, 25871652 - 25871373
Alignment:
Q  297 gtagtcaatctcttcgtaatccgagaggagcaacatatattagtgaaaaaccgcaaacgtgaatacaaatcaaatcccacttatagttcactactgctcc 396  Q
    |||||||||||||||||  |  | ||||||  |||||| ||||||||||| ||||| |||||||   |||| || ||||||||||||||| | | ||| |    
T  25871652 gtagtcaatctcttcgtggtttgggaggagtgacatatgttagtgaaaaatcgcaa-cgtgaatgataatccaagcccacttatagttcagtgccgcttc 25871554  T
Q  397 aggtgggagagcgggttcctgcttcgtgtgctccagttct-gattccaactcgtataaaatcacgattttgcccttaagatttgaacactttgaaggggt 495  Q
    ||||||||||||||||||||| |||||||  |||  |||  | ||||||||||||||||||||  ||||||||||||| || | ||| ||||||| ||||    
T  25871553 aggtgggagagcgggttcctggttcgtgtagtccgattcccggttccaactcgtataaaatcaaaattttgcccttaaaatctaaactctttgaaagggt 25871454  T
Q  496 aacttgggtttttt-gcacaaccctaacccttttctctcttctcatttccattttctctttgtatacgcagttttcaaccc 575  Q
    || ||||||||||| ||||||||||||||||||||||||||||| |||||||| ||||||||| ||||| |||||||||||    
T  25871453 aatttgggtttttttgcacaaccctaacccttttctctcttctcgtttccattctctctttgtgtacgccgttttcaaccc 25871373  T

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Target: chr7; HSP #3
Raw Score: 48; E-Value: 4e-18
Query Start/End: Original strand, 533 - 600
Target Start/End: Complemental strand, 25871367 - 25871300
Alignment:
Q  533 cttctcatttccattttctctttgtatacgcagttttcaaccctaaatcctttcattcatcacatgtt 600  Q
    |||||| |||||||| ||||||||| ||||| ||||||||||| ||||||||||||||||||||||||    
T  25871367 cttctcgtttccattctctctttgtgtacgccgttttcaacccgaaatcctttcattcatcacatgtt 25871300  T

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Target: chr7; HSP #4
Raw Score: 45; E-Value: 2e-16
Query Start/End: Original strand, 465 - 605
Target Start/End: Complemental strand, 7220589 - 7220450
Alignment:
Q  465 tgcccttaagatttgaacactttgaaggggtaacttgggttttttgcacaaccctaacccttttctctcttctcatttccattttctctttgtatacgca 564  Q
    ||||||||| ||||||||  |||||||||  || |||||||||| ||||||||||||||| ||||||||||||| |||||| | ||||| ||||  |||     
T  7220589 tgcccttaaaatttgaaccgtttgaaggga-aatttgggtttttcgcacaaccctaacccctttctctcttctcctttccactctctctctgtaaccgct 7220491  T
Q  565 gttttcaaccctaaatcctttcattcatcacatgttctctg 605  Q
    || ||||||| ||||  | |||| |||| |||| |||||||    
T  7220490 gtattcaaccttaaactccttcactcattacatattctctg 7220450  T

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Target: chr7; HSP #5
Raw Score: 29; E-Value: 0.0000009
Query Start/End: Original strand, 78 - 114
Target Start/End: Complemental strand, 7982327 - 7982291
Alignment:
Q  78 gagtttgatcaaaccactattttacgtgatatgtgat 114  Q
    |||||||| ||||||||||||||||||||| ||||||    
T  7982327 gagtttgaacaaaccactattttacgtgatctgtgat 7982291  T

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Target: chr5 (Bit Score: 55; Significance: 3e-22; HSPs: 4)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 55; E-Value: 3e-22
Query Start/End: Original strand, 452 - 553
Target Start/End: Original strand, 28034037 - 28034138
Alignment:
Q  452 aaaatcacgattttgcccttaagatttgaacactttgaaggggtaacttgggtttt-ttgcacaaccctaacccttttctctcttctcatttccattttc 550  Q
    |||||||||||| ||||||||| ||||||||  |||||||||  || ||||||||| |||||||||||||||||||||||||||||| ||||||||| ||    
T  28034037 aaaatcacgattatgcccttaaaatttgaactgtttgaaggga-aatttgggtttttttgcacaaccctaacccttttctctcttcttatttccattctc 28034135  T
Q  551 tct 553  Q
    |||    
T  28034136 tct 28034138  T

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Target: chr5; HSP #2
Raw Score: 46; E-Value: 6e-17
Query Start/End: Original strand, 500 - 605
Target Start/End: Complemental strand, 29794750 - 29794645
Alignment:
Q  500 tgggttttttgcacaaccctaacccttttctctcttctcatttccattttctctttgtatacgcagttttcaaccctaaatcctttcattcatcacatgt 599  Q
    |||||||||| |||||||| ||||||||||||| ||||| ||  |||| | ||| ||||||||| ||||||||||||||| |||||| || || |||||     
T  29794750 tgggtttttttcacaacccaaacccttttctctgttctccttagcattgtttctctgtatacgccgttttcaaccctaaaccctttcgttgattacatgc 29794651  T
Q  600 tctctg 605  Q
    ||||||    
T  29794650 tctctg 29794645  T

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Target: chr5; HSP #3
Raw Score: 42; E-Value: 0.00000000000002
Query Start/End: Original strand, 499 - 592
Target Start/End: Complemental strand, 1517890 - 1517798
Alignment:
Q  499 ttgggttttttgcacaaccctaacccttttctctcttctcatttccattttctctttgtatacgcagttttcaaccctaaatcctttcattcat 592  Q
    |||||||||||||||||||||||||||||||||||||||| ||||  |  ||||| ||||| ||| |||||||| | |||| | ||||||||||    
T  1517890 ttgggttttttgcacaaccctaacccttttctctcttctcctttctgtcctctctctgtat-cgccgttttcaaacataaaccatttcattcat 1517798  T

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Target: chr5; HSP #4
Raw Score: 33; E-Value: 0.000000004
Query Start/End: Original strand, 565 - 605
Target Start/End: Original strand, 39162517 - 39162557
Alignment:
Q  565 gttttcaaccctaaatcctttcattcatcacatgttctctg 605  Q
    ||||||||||||||| |||||||||||| ||||||||||||    
T  39162517 gttttcaaccctaaaccctttcattcattacatgttctctg 39162557  T

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Target: chr6 (Bit Score: 53; Significance: 4e-21; HSPs: 1)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 53; E-Value: 4e-21
Query Start/End: Original strand, 117 - 204
Target Start/End: Original strand, 17251810 - 17251898
Alignment:
Q  117 acactagatttggtacagcaacattaactattttct-ttcaaattaaataaattcagttttgtttctaatttttaaatcatctttattt 204  Q
    |||||||||| |||||| |||||||||||||||| | ||||||||||||||||||| |||| ||||||||||| ||||| |||||||||    
T  17251810 acactagattgggtacaacaacattaactattttttcttcaaattaaataaattcatttttatttctaattttcaaatcttctttattt 17251898  T

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Target: chr2 (Bit Score: 51; Significance: 6e-20; HSPs: 1)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 51; E-Value: 6e-20
Query Start/End: Original strand, 505 - 579
Target Start/End: Complemental strand, 21375384 - 21375310
Alignment:
Q  505 tttttgcacaaccctaacccttttctctcttctcatttccattttctctttgtatacgcagttttcaaccctaaa 579  Q
    |||||||||||||||||||||||||| ||||||| |||||||| ||||| ||||| ||| |||||||||||||||    
T  21375384 tttttgcacaaccctaacccttttctatcttctcctttccattctctctctgtatccgccgttttcaaccctaaa 21375310  T

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Target: chr4 (Bit Score: 49; Significance: 1e-18; HSPs: 1)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 49; E-Value: 1e-18
Query Start/End: Original strand, 392 - 531
Target Start/End: Original strand, 29171829 - 29171968
Alignment:
Q  392 gctccaggtgggagagcgggttcctgcttcgtgtgctccagttc-tgattccaactcgtataaaatcacgattttgcccttaagatttgaacactttgaa 490  Q
    |||||||||||||||||||||||||| |||| ||||||| |||| ||  |||  |||    |||||||| |||||||| |||| |||||||   ||||||    
T  29171829 gctccaggtgggagagcgggttcctggttcgcgtgctcctgttcctgggtcccgctccaggaaaatcacaattttgccgttaaaatttgaattgtttgaa 29171928  T
Q  491 ggggtaacttgggttttttgcacaaccctaacccttttctc 531  Q
    |||  || |||||||||||||||||||||||||||||||||    
T  29171929 gggc-aatttgggttttttgcacaaccctaacccttttctc 29171968  T

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Target: chr1 (Bit Score: 49; Significance: 1e-18; HSPs: 1)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 49; E-Value: 1e-18
Query Start/End: Original strand, 496 - 592
Target Start/End: Complemental strand, 36496356 - 36496260
Alignment:
Q  496 aacttgggttttttgcacaaccctaacccttttctctcttctcatttccattttctctttgtatacgcagttttcaaccctaaatcctttcattcat 592  Q
    |||| |||||| || ||||||| |||||||||||||||||||| |||||||| ||||| ||||  ||| | ||||||||||||| ||||||||||||    
T  36496356 aactcgggtttcttacacaaccttaacccttttctctcttctcctttccattctctctctgtaatcgccgatttcaaccctaaaccctttcattcat 36496260  T

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Target: chr8 (Bit Score: 43; Significance: 0.000000000000004; HSPs: 1)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 43; E-Value: 0.000000000000004
Query Start/End: Original strand, 452 - 534
Target Start/End: Original strand, 8247110 - 8247191
Alignment:
Q  452 aaaatcacgattttgcccttaagatttgaacactttgaaggggtaacttgggttttttgcacaaccctaacccttttctctct 534  Q
    |||||||||||||||||||||| ||||||||  |||||| ||| || ||||||||||||||||| ||||| |||| |||||||    
T  8247110 aaaatcacgattttgcccttaaaatttgaaccatttgaa-gggcaatttgggttttttgcacaaacctaatccttctctctct 8247191  T

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