View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF4093_low_4 (Length: 513)
Name: NF4093_low_4
Description: NF4093
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF4093_low_4 |
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Alignment Details
Target: chr4 (Bit Score: 225; Significance: 1e-124; HSPs: 2)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 225; E-Value: 1e-124
Query Start/End: Original strand, 222 - 495
Target Start/End: Original strand, 38625576 - 38625845
Alignment:
| Q |
222 |
gattgatgttgactctaccttaaggaagttcaaaagtcaactccttaaagatggagataaagagcaggaggttcaaagttatgtgaagcagttatactct |
321 |
Q |
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| T |
38625576 |
gattgatgttgactctaccttaaggaagtccaaaagtcaactccttaaagatggagataaagagcaggaggttcaaagttatgtgaagcagttataccct |
38625675 |
T |
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| Q |
322 |
cgtttatcaaagaaaaataagaaggaggaggagcaattcaagaaatttatgaagctttttagtcaacttcaagtcaacatttcatttgatgaggttttgg |
421 |
Q |
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| T |
38625676 |
cgtttatcaaagaaaaataagaagcaggaggagcaattcaagaaatttatggagcttttttgtcaacttcaagtcaacatttcatttgatgaggttttgg |
38625775 |
T |
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| Q |
422 |
accatatgtcgtgtatgctaattaagttcatgaaatatttgtttacaaaaagaaggaagctaggagatgatgag |
495 |
Q |
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| T |
38625776 |
accatatgtcgtgtacgc----taagttcatgaaatatttgtttaccagaagaaggaagctaggagatgatgag |
38625845 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #2
Raw Score: 111; E-Value: 8e-56
Query Start/End: Original strand, 9 - 156
Target Start/End: Original strand, 38625363 - 38625510
Alignment:
| Q |
9 |
gaagaatatggagacacaaatttggcaactagctnnnnnnnttgttgcccagtcaagtgaaggatttgttgggggtgccacaaacaatccaaagaatgaa |
108 |
Q |
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| T |
38625363 |
gaagaatatggagacacaaatttggcaactagctaaaaaaattgttgcccagtcaagtggaggatttgttgggggtaccacaaacaatccaaagaatgaa |
38625462 |
T |
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| Q |
109 |
agttgcaaagaaattgagttagggaacaaaaaggtattgacaccggtg |
156 |
Q |
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| T |
38625463 |
agttgcaaagcaattgagttagggaacaaaaaggtgttgacaccggtg |
38625510 |
T |
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