View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF4093_low_6 (Length: 427)
Name: NF4093_low_6
Description: NF4093
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF4093_low_6 |
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Alignment Details
Target: chr6 (Bit Score: 161; Significance: 1e-85; HSPs: 2)
Name: chr6
Description:
Target: chr6; HSP #1
Raw Score: 161; E-Value: 1e-85
Query Start/End: Original strand, 18 - 193
Target Start/End: Complemental strand, 3838401 - 3838225
Alignment:
| Q |
18 |
aagttgctattcccatataaca-tcaataccctagaggcacctcaggcgacaatcaaaaccttagaaacacatattttagtccctttaattatatcaact |
116 |
Q |
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| T |
3838401 |
aagtttctattcccatataacaatcaataccctagaggcacctcaggcgacaatcaaaaccttagaaacacatattttagtccctttaattatatcaact |
3838302 |
T |
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| Q |
117 |
tcatttttagcttcattaatggtttcctcgaaactttggtctatctaacatttcttttttcaattctagtccctacc |
193 |
Q |
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| T |
3838301 |
tcatttttagcttcattaaaggtttcctcgaaactttggtctatctaacatttcttttttcaattctagtccctacc |
3838225 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #2
Raw Score: 48; E-Value: 3e-18
Query Start/End: Original strand, 336 - 427
Target Start/End: Complemental strand, 3838092 - 3838001
Alignment:
| Q |
336 |
atgaagatatagagaaataaataaagattcaagaataaatgtataatttaaatagtttctcacttgacacttagattttcagatgctatttt |
427 |
Q |
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| T |
3838092 |
atgaagttatagacaaattaataaagattagagattaaatggataatttaataagtttctcacttgaaactttgattttcagatgctatttt |
3838001 |
T |
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