View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF4093_low_7 (Length: 390)
Name: NF4093_low_7
Description: NF4093
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF4093_low_7 |
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Alignment Details
Target: chr7 (Bit Score: 314; Significance: 1e-177; HSPs: 2)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 314; E-Value: 1e-177
Query Start/End: Original strand, 14 - 372
Target Start/End: Original strand, 47072109 - 47072466
Alignment:
| Q |
14 |
gagatgaacagatgaaggtggtagaagtagaattatttgtaactgataccctattatgaatatgaagcattggattcttactttcaataattaatggtac |
113 |
Q |
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| T |
47072109 |
gagaagaacagatgaaggtggtagaagtagaattatttgtaactgataccctattatgaatatgaagcaatggattcttactttcaataattaatggtac |
47072208 |
T |
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| Q |
114 |
tgggtacatcaattatatacattttggaagaaaggaagatgaactggaaactgaatcaaataacataatgtaaactaaaagctaactaacatgaaataga |
213 |
Q |
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| T |
47072209 |
tgggtacatcaattatatacattttggaagaaaggaagatcaacttgaaactgaatcaaataacataatgtaaactaaaagctaactaacatgaaataga |
47072308 |
T |
|
| Q |
214 |
aagagcataaactactactatctaactttcataatcaagatgctacatatggcagagattcatgcttcaatttacagttcatttgaatgnnnnnnntgca |
313 |
Q |
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| T |
47072309 |
aagagcataaactactactatctaactttcataatcaagatgctacatatggcagagattcatgcttcaatttacagttcatttgaatgaaaaaac-gca |
47072407 |
T |
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| Q |
314 |
tttgcgacctaaaatttcgtccgcatccaacacaaataaaatgtaccacttaatatcta |
372 |
Q |
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| T |
47072408 |
tttgcgacctaaaatttcgtccgcatccaacacaaataaaatgtaccacttaatatcta |
47072466 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #2
Raw Score: 234; E-Value: 1e-129
Query Start/End: Original strand, 55 - 372
Target Start/End: Original strand, 33598227 - 33598542
Alignment:
| Q |
55 |
actgataccctattatgaatatgaagcattggattcttactttcaataattaatggtactgggtacatcaattatatacattttggaagaaaggaagatg |
154 |
Q |
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| T |
33598227 |
actgataccctattatgaatatgaagcaacgctttcttactttcaataatgaatggtactgggtacatcaattatatacattttggaagaaaggaagatc |
33598326 |
T |
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| Q |
155 |
aactggaaactgaatcaaataacataatgtaaactaaaagctaactaacatgaaatagaaagagcataaactactactatctaactttcataatcaagat |
254 |
Q |
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| T |
33598327 |
aacttgaaactgaatcaaataacacaatgtaaactaaaagttaattaacatgaaatagaaagggcataaactactactatctaactttcataatcaagat |
33598426 |
T |
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| Q |
255 |
gctacatatggcagagattcatgcttcaatttacagttcatttgaatgnnnnnnntgcatttgcgacctaaaatttcgtccgcatccaacacaaataaaa |
354 |
Q |
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| T |
33598427 |
gctacatatggcagagattcatgcttcaatctacagttcatttgaatgaaaaacgt--atttgagacctaaaatttcgtccgcatccaacacaaataaaa |
33598524 |
T |
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| Q |
355 |
tgtaccacttaatatcta |
372 |
Q |
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|||||||||||||||||| |
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| T |
33598525 |
tgtaccacttaatatcta |
33598542 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1 (Bit Score: 70; Significance: 2e-31; HSPs: 1)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 70; E-Value: 2e-31
Query Start/End: Original strand, 161 - 302
Target Start/End: Complemental strand, 18232908 - 18232771
Alignment:
| Q |
161 |
aaactgaatcaaataacataatgtaaactaaaagctaactaacatgaaatagaaagagcataaactactactatctaactttcataatcaagatgctaca |
260 |
Q |
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|||||||||||| ||||| ||||||||||| |||||||| ||||||||||||||| ||||||||||||||||||||||| || |||||||||| | |
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| T |
18232908 |
aaactgaatcaagtaacacaatgtaaactagaagctaacaaacatgaaatagaaatagcataaactactactatctaacatttataatcaaga------a |
18232815 |
T |
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| Q |
261 |
tatggcagagattcatgcttcaattt--acagttcatttgaatg |
302 |
Q |
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||| ||||||||||||| ||| |||| |||||||||||||||| |
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| T |
18232814 |
tatagcagagattcatgtttctatttacacagttcatttgaatg |
18232771 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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