View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF4093_low_9 (Length: 377)
Name: NF4093_low_9
Description: NF4093
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF4093_low_9 |
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Alignment Details
Target: chr6 (Bit Score: 309; Significance: 1e-174; HSPs: 2)
Name: chr6
Description:
Target: chr6; HSP #1
Raw Score: 309; E-Value: 1e-174
Query Start/End: Original strand, 13 - 366
Target Start/End: Complemental strand, 3837791 - 3837436
Alignment:
| Q |
13 |
ttgttgacttgtaaaaattgtgtaacagcgtgtgttttgttttatataggattctttgaatgtaatttaccgcagaagctttgtattgtatagtaaggta |
112 |
Q |
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| T |
3837791 |
ttgttgacttgtaaaaattgtgtaacagcgtgtgttttgttttatataggattctttgaatgtaatttaccgcagaagctttgaattgtattgtaaggta |
3837692 |
T |
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| Q |
113 |
tgttctctaattagtttggttaagaaactgct--gtttatcggttgagttaaacggaattccccttaagttgacctgttaatttattcttaaaccagtta |
210 |
Q |
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| T |
3837691 |
tgttctctaattagtttggttaagaaactgctatgtttatcggttgagttaaacggaattccccttaagttgacctgttaatttattcttaaaccagtta |
3837592 |
T |
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| Q |
211 |
cttaaccatttgatttattaacaccttttttaaggatctccaagattttgcatcagatcaacaatcaacaaggataaccgagtcttctccttcttccgtt |
310 |
Q |
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| T |
3837591 |
cttaaccatttgatttattaacaccttttttaaggatctccaagattttgcaccagatcaacaatcaacaaggataaccgagtcttctccttcttccgtt |
3837492 |
T |
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| Q |
311 |
acaaaggtaataagacataaaagtttttgttgtttccctttactttgatatccttt |
366 |
Q |
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| T |
3837491 |
acaaaggtaataagacataaaaatttatgttctttctcttttctttgctatccttt |
3837436 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #2
Raw Score: 56; E-Value: 4e-23
Query Start/End: Original strand, 144 - 366
Target Start/End: Complemental strand, 3831398 - 3831170
Alignment:
| Q |
144 |
tgtttatcggttgagttaaacggaattccccttaagttgacctgttaatttattcttaaaccagttacttaaccatttgatttattaacaccttttttaa |
243 |
Q |
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||||||| ||||||||||||||| || |||||||| |||| || |||||||||||||||| |||| ||||||||||| ||||| ||||||| |||| || |
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| T |
3831398 |
tgtttatgggttgagttaaacggcgtttcccttaagatgacatgctaatttattcttaaactagttgcttaaccatttcatttactaacaccattttcaa |
3831299 |
T |
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| Q |
244 |
gg--atctccaagatttt-gcatcagatcaacaatca---acaaggataaccgagtcttctccttcttccgttacaaaggtaataagacataaaagtttt |
337 |
Q |
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| T |
3831298 |
gggtatcaagaaaattttggcagaagatgaacaattaatgacatccgtatccgagttttatccttcttttggtaccaaggtaatcagacataaaagttta |
3831199 |
T |
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| Q |
338 |
tgttgtttccctttactttgatatccttt |
366 |
Q |
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| T |
3831198 |
tgttgtttccctttactttgctatccttt |
3831170 |
T |
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