View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

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 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF4094-2-Insertion-1 (Length: 801)

Name: NF4094-2-Insertion-1
Description: NF4094-2
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF4094-2-Insertion-1
NF4094-2-Insertion-1
[»] chr1 (23 HSPs)
chr1 (382-801)||(2011602-2012014)
chr1 (7-310)||(2017109-2017413)
chr1 (307-801)||(2006021-2006521)
chr1 (477-801)||(2010287-2010604)
chr1 (381-801)||(2019413-2019817)
chr1 (307-443)||(2010147-2010285)
chr1 (491-633)||(6601895-6602037)
chr1 (491-634)||(3218661-3218804)
chr1 (495-633)||(3361471-3361609)
chr1 (568-633)||(6592643-6592708)
chr1 (700-756)||(6601779-6601835)
chr1 (495-630)||(3372443-3372578)
chr1 (710-747)||(2948497-2948534)
chr1 (710-747)||(3340472-3340509)
chr1 (710-751)||(4323139-4323180)
chr1 (493-650)||(4323236-4323393)
chr1 (684-745)||(9818941-9819002)
chr1 (493-581)||(4335204-4335292)
chr1 (700-747)||(3349336-3349383)
chr1 (710-748)||(3361682-3361720)
chr1 (700-738)||(3378688-3378726)
chr1 (17-54)||(2018807-2018844)
chr1 (700-757)||(6592526-6592583)
[»] chr2 (8 HSPs)
chr2 (495-633)||(39273802-39273940)
chr2 (511-642)||(20934229-20934360)
chr2 (493-633)||(20952755-20952895)
chr2 (707-761)||(20923438-20923492)
chr2 (548-650)||(20926881-20926984)
chr2 (710-760)||(20952962-20953012)
chr2 (567-650)||(20923302-20923385)
chr2 (710-764)||(20927040-20927094)
[»] chr5 (1 HSPs)
chr5 (710-747)||(17969825-17969862)


Alignment Details
Target: chr1 (Bit Score: 333; Significance: 0; HSPs: 23)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 333; E-Value: 0
Query Start/End: Original strand, 382 - 801
Target Start/End: Original strand, 2011602 - 2012014
Alignment:
Q  382 cttagtttgtttacttattcttgtatgttatcttcgtttgaatatgaatgtatttatctaaaggcaggaaaaccatcagagtctagctgcctaataatga 481  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||    
T  2011602 cttagtttgtttacttattcttgtatgttatcttcgtttgaatatgaatgtatttatctaaaggcaggaaaactatcagagtctagctgcctaataatga 2011701  T
Q  482 tatacgagaagccggatagaattagtgttttaccagttgatgtaatagaccggattttgtcatgcttgccaattagggatgttgtgagaacaagtgtttt 581  Q
    || ||||| ||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||    
T  2011702 tagacgaggagccggatagaattagtgttttaccaggtgatgtaatagaccggattttgtcatgcttgccaattagggatgttgtgagaacaagtatttt 2011801  T
Q  582 atcaaacaaatggaggtacaaatggatcacaataccaaatcttgtgtttgattcacaatgtgtgtctgcaacatcgatttctgaccaccctgcagctatc 681  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||      ||||| |||||||||||||||    
T  2011802 atcaaacaaatggaggtacaaatggatcacaataccaaatcttgtgtttgattcacaatgtgtgtctgcaaca------tctgaacaccctgcagctatc 2011895  T
Q  682 aaagagaaagcttttggcaattatcgaccatgtacttttactttattctgggccaatcaacaagttcaagctctctgattgtgttgtgatcagtgcgact 781  Q
     |||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||  || || | | || |||||||||    
T  2011896 -aagagaaagcttttggcaattatcgaccatgtacttttactttattatgggccaatcaacaagttcaagctctctccttttggtctcattagtgcgact 2011994  T
Q  782 gctcttgataggtggatttt 801  Q
    ||||||||||||||||||||    
T  2011995 gctcttgataggtggatttt 2012014  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #2
Raw Score: 224; E-Value: 1e-123
Query Start/End: Original strand, 7 - 310
Target Start/End: Original strand, 2017109 - 2017413
Alignment:
Q  7 attttctccaagtcttcttatgtgtaatgttttaacatgcattccatgtatgaattttattgactaaaatgttgtcttgttacagctcagtacatggttt 106  Q
    ||||||||||||||||||||| ||||||||||||||||| |||||||| ||  |||||||||| ||||||||||||||||||||| | ||| ||||||||    
T  2017109 attttctccaagtcttcttatatgtaatgttttaacatgtattccatgaatatattttattgattaaaatgttgtcttgttacagatgagtgcatggttt 2017208  T
Q  107 agaagaaaaatatagnnnnnnnaggatgttttctctctttaggagaagaaactcaaaattttgatttt-taacacatctttttcaataaaagagggaagg 205  Q
    |||||||||||||||       |||||||||||||||||||||||||||||| ||||||||||||||| |||||||||||||||||||||||||||||||    
T  2017209 agaagaaaaatatagtttttttaggatgttttctctctttaggagaagaaacacaaaattttgattttttaacacatctttttcaataaaagagggaagg 2017308  T
Q  206 cctgatttgacccttcataattttcatgcgaaccaattttttcatgaaaaataaaacccaaaatagtctctgacatttgcacatggtcacaaatttgtcc 305  Q
    ||||||||||||||||||||||||| |||||||||||||| |||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  2017309 cctgatttgacccttcataattttcctgcgaaccaattttgtcatgagaaataaaacccaaaatagtctctgacatttgcacatggtcacaaatttgtcc 2017408  T
Q  306 ctcaa 310  Q
    |||||    
T  2017409 ctcaa 2017413  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #3
Raw Score: 189; E-Value: 1e-102
Query Start/End: Original strand, 307 - 801
Target Start/End: Original strand, 2006021 - 2006521
Alignment:
Q  307 tcaaaagagtactctgtgttttaagtatttctag--gtgggtctagcaaaaattctacatacatggatgtacactaacttagtttgtttacttattcttg 404  Q
    ||||||||||| | |||||||||||||| | |||  ||||||||||||||||||||||||||||||||    ||||||||||||||||| ||||||||||    
T  2006021 tcaaaagagtaatttgtgttttaagtatctatagatgtgggtctagcaaaaattctacatacatggat----actaacttagtttgttttcttattcttg 2006116  T
Q  405 tatgttatcttcgtttgaatatgaatgtatttatctaaaggcaggaaaaccatcagagtctagctgcctaataatgatatacgagaagccggatagaatt 504  Q
    |||||| |||||||||||||||| || |||||||||||||||| | ||||||||| |||||| | |||||| ||||||| ||| | ||||||||||||||    
T  2006117 tatgttctcttcgtttgaatatggatatatttatctaaaggcaaggaaaccatcaaagtctacccgcctaaaaatgatagacggggagccggatagaatt 2006216  T
Q  505 agtgttttaccagttgatgtaatagaccggattttgtcatgcttgccaattagggatgttgtgagaacaagtgttttatcaaacaaatggaggtacaaat 604  Q
    |||  ||||| || |||||||||||||  |||| |||||  ||||||||||||||| | ||||||||||||||||||||| |||||||||||||||||||    
T  2006217 agttatttactaggtgatgtaatagacaagattctgtcacacttgccaattagggaagctgtgagaacaagtgttttatccaacaaatggaggtacaaat 2006316  T
Q  605 ggatcacaataccaaatcttgtgtttgattcacaatgtgtgtctgcaacatcga---tttctgaccaccctgcagctatcaaagagaaagcttttggcaa 701  Q
    ||  |||||||||||||||||||||||||  ||||||||| ||||||||||| |    ||| || |    |  || |||   || |||||||| ||| ||    
T  2006317 gggccacaataccaaatcttgtgtttgataaacaatgtgtctctgcaacatccaaatgttccgaactttttttagatat-ggagggaaagcttatggaaa 2006415  T
Q  702 ttatcgaccatgtacttttactttattctgggccaatcaacaagttcaagctctctgattgtgttg------tgatcagtgcgactgctcttgataggtg 795  Q
    |||| || || |||||||||||||||||||||||||||||||||||| || |||||  ||||| ||      | || |||| ||||||||||||||||||    
T  2006416 ttattgatcaggtacttttactttattctgggccaatcaacaagttccagatctctcgttgtggtgtcaatctcattagtgagactgctcttgataggtg 2006515  T
Q  796 gatttt 801  Q
    ||||||    
T  2006516 gatttt 2006521  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #4
Raw Score: 166; E-Value: 2e-88
Query Start/End: Original strand, 477 - 801
Target Start/End: Original strand, 2010287 - 2010604
Alignment:
Q  477 aatgatatacgagaagccggatagaattagtgttttaccagttgatgtaatagaccggattttgtcatgcttgccaattagggatgttgtgagaacaagt 576  Q
    ||||||| ||||| |||||||||||||||||  |||||| | ||||||||||||||| ||||||| | ||||||| |||||||| |||||||||||||||    
T  2010287 aatgatagacgaggagccggatagaattagttgtttaccgggtgatgtaatagaccgaattttgttacgcttgcctattagggacgttgtgagaacaagt 2010386  T
Q  577 gttttatcaaacaaatggaggtacaaatggatcacaataccaaatcttgtgtttgattcacaatgtgtgtctgcaacatcgatttctgaccaccctgcag 676  Q
    |||||||  |||||||||||||||||||||| |||||||||||||||||||||||||  ||||||||| |||||||||      ||  | | ||||  ||    
T  2010387 gttttatgcaacaaatggaggtacaaatggaccacaataccaaatcttgtgtttgataaacaatgtgtctctgcaaca------tcccatcgccctttag 2010480  T
Q  677 ctatcaaagagaaagcttttggcaattatcgaccatgtacttttactttattctgggccaatcaacaagttcaagctctctgattgtgttgtgatcagtg 776  Q
     ||||  |||||||||||||||||||||| || |||||||||||||||||||| |||||||||||||||||||||||||||||||||| |||||||||||    
T  2010481 ttatc-gagagaaagcttttggcaattattgatcatgtacttttactttattccgggccaatcaacaagttcaagctctctgattgtggtgtgatcagtg 2010579  T
Q  777 cgactgctcttgataggtggatttt 801  Q
     ||||||| ||||||||| ||||||    
T  2010580 tgactgcttttgataggtagatttt 2010604  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #5
Raw Score: 158; E-Value: 1e-83
Query Start/End: Original strand, 381 - 801
Target Start/End: Original strand, 2019413 - 2019817
Alignment:
Q  381 acttagtttgtttacttattcttgtatgttatcttcgtttgaatatgaatgtatttatctaaaggcaggaaaaccatcagagtctagctgcctaataatg 480  Q
    ||||||||||||| |  |||||||||||||  ||| |||||||||||||| | ||||| |||||||||||||||||||| |   || |  ||||| ||||    
T  2019413 acttagtttgttttccgattcttgtatgttccctttgtttgaatatgaatatttttatgtaaaggcaggaaaaccatcaaa---taccctcctaacaatg 2019509  T
Q  481 atatacgagaagccggatagaattagtgttttaccagttgatgtaatagaccggattttgtcatgcttgccaattagggatgttgtgagaacaagtgttt 580  Q
    | | ||||| |||||||||||||||||  |||||| | ||||||||||||||| ||||||| | ||||||| |||||||| | |||||||||||||||||    
T  2019510 acagacgaggagccggatagaattagttgtttaccgggtgatgtaatagaccgaattttgttacgcttgcctattagggacgctgtgagaacaagtgttt 2019609  T
Q  581 tatcaaacaaatggaggtacaaatggatcacaataccaaatcttgtgtttgattcacaatgtgtgtctgcaacatcgatttctgaccaccctgcagctat 680  Q
    |||| |||||||||||||||||||||  |||||| ||||||||||| ||| ||  |||| |||| ||||||||| |            ||||   | |||    
T  2019610 tatccaacaaatggaggtacaaatgggccacaatgccaaatcttgtatttaataaacaacgtgtctctgcaacagc------------cccttttgttat 2019697  T
Q  681 caaagagaaagcttttggcaattatcgaccatgtacttttactttattctgggccaatcaacaagttcaagctctctgattgtgttgtgatcagtgcgac 780  Q
    |  || ||||||||||||||||||| || |||||||||||||||||||| |||||||||||||||||||||||||||||||||| ||||||||||| |||    
T  2019698 cggag-gaaagcttttggcaattattgatcatgtacttttactttattccgggccaatcaacaagttcaagctctctgattgtggtgtgatcagtgtgac 2019796  T
Q  781 tgctcttgataggtggatttt 801  Q
    ||||||||| |||||||||||    
T  2019797 tgctcttgacaggtggatttt 2019817  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #6
Raw Score: 68; E-Value: 6e-30
Query Start/End: Original strand, 307 - 443
Target Start/End: Original strand, 2010147 - 2010285
Alignment:
Q  307 tcaaaagagtactctgtgttttaagtatttctag--gtgggtctagcaaaaattctacatacatggatgtacactaacttagtttgtttacttattcttg 404  Q
    ||||||||||| |||||||||||||||| | |||  |||||||||||||||||| | |||||| |||||||| |||||||| |||||||  |||||||||    
T  2010147 tcaaaagagtaatctgtgttttaagtatctatagatgtgggtctagcaaaaattatgcatacaaggatgtacgctaacttaatttgtttcgttattcttg 2010246  T
Q  405 tatgttatcttcgtttgaatatgaatgtatttatctaaa 443  Q
    ||||||  ||| |||||||||||||| ||||||| ||||    
T  2010247 tatgttccctttgtttgaatatgaatatatttatttaaa 2010285  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #7
Raw Score: 51; E-Value: 8e-20
Query Start/End: Original strand, 491 - 633
Target Start/End: Complemental strand, 6602037 - 6601895
Alignment:
Q  491 agccggatagaattagtgttttaccagttgatgtaatagaccggattttgtcatgcttgccaattagggatgttgtgagaacaagtgttttatcaaacaa 590  Q
    |||| ||||||||||||  |||||||| | || |||||||||  ||| | |||   |||||||||| ||| |  |||||||||||| ||||||||| |||    
T  6602037 agcccgatagaattagtagtttaccaggtcatataatagaccaaattctctcaattttgccaattaaggaagcagtgagaacaagtattttatcaaccaa 6601938  T
Q  591 atggaggtacaaatggatcacaataccaaatcttgtgtttgat 633  Q
    ||||||||||||||||  |||| | ||||||||||||||||||    
T  6601937 atggaggtacaaatgggccacacttccaaatcttgtgtttgat 6601895  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #8
Raw Score: 44; E-Value: 0.000000000000001
Query Start/End: Original strand, 491 - 634
Target Start/End: Complemental strand, 3218804 - 3218661
Alignment:
Q  491 agccggatagaattagtgttttaccagttgatgtaatagaccggattttgtcatgcttgccaattagggatgttgtgagaacaagtgttttatcaaacaa 590  Q
    |||||||||||||||||   ||||||| | |||||||||| | |||| | |||| ||||||||||||||| |  |||| |||||||||||| || |   |    
T  3218804 agccggatagaattagttgcttaccaggtcatgtaatagatcagattctctcatacttgccaattagggaagcagtgaaaacaagtgttttgtccagtga 3218705  T
Q  591 atggaggtacaaatggatcacaataccaaatcttgtgtttgatt 634  Q
    ||||||| | ||||||  |||| |||||||| ||||||||||||    
T  3218704 atggaggaataaatggcacacactaccaaatattgtgtttgatt 3218661  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #9
Raw Score: 43; E-Value: 0.000000000000005
Query Start/End: Original strand, 495 - 633
Target Start/End: Original strand, 3361471 - 3361609
Alignment:
Q  495 ggatagaattagtgttttaccagttgatgtaatagaccggattttgtcatgcttgccaattagggatgttgtgagaacaagtgttttatcaaacaaatgg 594  Q
    |||||||||||||   ||||||| | | |||||||||| ||| ||||||| ||||||||| | ||| |  |||||||||||| ||||||| | |||||||    
T  3361471 ggatagaattagttgcttaccagatcacgtaatagaccagatcttgtcatacttgccaatcaaggaagcagtgagaacaagtattttatccagcaaatgg 3361570  T
Q  595 aggtacaaatggatcacaataccaaatcttgtgtttgat 633  Q
    ||  ||||||||  |||  ||||||||||||| ||||||    
T  3361571 agtaacaaatggtacacgctaccaaatcttgtatttgat 3361609  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #10
Raw Score: 38; E-Value: 0.000000000005
Query Start/End: Original strand, 568 - 633
Target Start/End: Complemental strand, 6592708 - 6592643
Alignment:
Q  568 agaacaagtgttttatcaaacaaatggaggtacaaatggatcacaataccaaatcttgtgtttgat 633  Q
    ||||||||| ||||||| | ||| |||||||||||||||| |||| | ||||||||||||||||||    
T  6592708 agaacaagtattttatctaccaactggaggtacaaatggaccacacttccaaatcttgtgtttgat 6592643  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #11
Raw Score: 37; E-Value: 0.00000000002
Query Start/End: Original strand, 700 - 756
Target Start/End: Complemental strand, 6601835 - 6601779
Alignment:
Q  700 aattatcgaccatgtacttttactttattctgggccaatcaacaagttcaagctctc 756  Q
    |||||| || ||||||||||||||  |||||||||||||||| ||||||||||||||    
T  6601835 aattattgatcatgtacttttactccattctgggccaatcaaaaagttcaagctctc 6601779  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #12
Raw Score: 36; E-Value: 0.00000000008
Query Start/End: Original strand, 495 - 630
Target Start/End: Original strand, 3372443 - 3372578
Alignment:
Q  495 ggatagaattagtgttttaccagttgatgtaatagaccggattttgtcatgcttgccaattagggatgttgtgagaacaagtgttttatcaaacaaatgg 594  Q
    |||||||||||||   ||||||| | |||||||||| | |||| | |||  | |||||||||  || |  |||||||||||||||||||| | ||  |||    
T  3372443 ggatagaattagttgcttaccaggtcatgtaatagatcagattctctcactcatgccaattaaagaagcagtgagaacaagtgttttatccagcagctgg 3372542  T
Q  595 aggtacaaatggatcacaataccaaatcttgtgttt 630  Q
    ||| ||||||||  |||| |||||||||||||||||    
T  3372543 aggaacaaatggtacacactaccaaatcttgtgttt 3372578  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #13
Raw Score: 34; E-Value: 0.000000001
Query Start/End: Original strand, 710 - 747
Target Start/End: Complemental strand, 2948534 - 2948497
Alignment:
Q  710 catgtacttttactttattctgggccaatcaacaagtt 747  Q
    ||||||||||||||| ||||||||||||||||||||||    
T  2948534 catgtacttttacttcattctgggccaatcaacaagtt 2948497  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #14
Raw Score: 34; E-Value: 0.000000001
Query Start/End: Original strand, 710 - 747
Target Start/End: Original strand, 3340472 - 3340509
Alignment:
Q  710 catgtacttttactttattctgggccaatcaacaagtt 747  Q
    ||||||||||||||| ||||||||||||||||||||||    
T  3340472 catgtacttttacttcattctgggccaatcaacaagtt 3340509  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #15
Raw Score: 34; E-Value: 0.000000001
Query Start/End: Original strand, 710 - 751
Target Start/End: Complemental strand, 4323180 - 4323139
Alignment:
Q  710 catgtacttttactttattctgggccaatcaacaagttcaag 751  Q
    ||||||||||||||| |||||||||||||||||| |||||||    
T  4323180 catgtacttttacttcattctgggccaatcaacatgttcaag 4323139  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #16
Raw Score: 34; E-Value: 0.000000001
Query Start/End: Original strand, 493 - 650
Target Start/End: Complemental strand, 4323393 - 4323236
Alignment:
Q  493 ccggatagaattagtgttttaccagttgatgtaatagaccggattttgtcatgcttgccaattagggatgttgtgagaacaagtgttttatcaaacaaat 592  Q
    |||||||||||||||   || |||| | |||||| ||| | |||| |||| | |||||| |||||||| |  ||||||||||||||||| || |  || |    
T  4323393 ccggatagaattagttggttgccaggtcatgtaacagatcagattatgtcttacttgccgattagggacgcagtgagaacaagtgttttgtcgaggaatt 4323294  T
Q  593 ggaggtacaaatggatcacaataccaaatcttgtgtttgattcacaatgtgtgtctgc 650  Q
    ||||| | ||||||   ||| | |||||||||||| |||||  |||||||||||||||    
T  4323293 ggaggaaaaaatggtatacacttccaaatcttgtgcttgatagacaatgtgtgtctgc 4323236  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #17
Raw Score: 34; E-Value: 0.000000001
Query Start/End: Original strand, 684 - 745
Target Start/End: Complemental strand, 9819002 - 9818941
Alignment:
Q  684 agagaaagcttttggcaattatcgaccatgtacttttactttattctgggccaatcaacaag 745  Q
    |||||||| |||||  |||||| || ||||||||||||||| |||| |||||||||||||||    
T  9819002 agagaaagtttttgagaattattgatcatgtacttttacttcattccgggccaatcaacaag 9818941  T

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Target: chr1; HSP #18
Raw Score: 33; E-Value: 0.000000005
Query Start/End: Original strand, 493 - 581
Target Start/End: Complemental strand, 4335292 - 4335204
Alignment:
Q  493 ccggatagaattagtgttttaccagttgatgtaatagaccggattttgtcatgcttgccaattagggatgttgtgagaacaagtgtttt 581  Q
    |||||||||||||||   ||||||| | |||||||||||| |||| |||| |  ||||| |||||||| |  |||||||||||||||||    
T  4335292 ccggatagaattagttggttaccaggtcatgtaatagaccagattatgtcttatttgccgattagggacgcggtgagaacaagtgtttt 4335204  T

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Target: chr1; HSP #19
Raw Score: 32; E-Value: 0.00000002
Query Start/End: Original strand, 700 - 747
Target Start/End: Original strand, 3349336 - 3349383
Alignment:
Q  700 aattatcgaccatgtacttttactttattctgggccaatcaacaagtt 747  Q
    |||||| || ||||||||||||||| ||||||||| ||||||||||||    
T  3349336 aattattgatcatgtacttttacttcattctgggctaatcaacaagtt 3349383  T

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Target: chr1; HSP #20
Raw Score: 31; E-Value: 0.00000007
Query Start/End: Original strand, 710 - 748
Target Start/End: Original strand, 3361682 - 3361720
Alignment:
Q  710 catgtacttttactttattctgggccaatcaacaagttc 748  Q
    ||||||||||||||| ||| |||||||||||||||||||    
T  3361682 catgtacttttacttcattatgggccaatcaacaagttc 3361720  T

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Target: chr1; HSP #21
Raw Score: 31; E-Value: 0.00000007
Query Start/End: Original strand, 700 - 738
Target Start/End: Original strand, 3378688 - 3378726
Alignment:
Q  700 aattatcgaccatgtacttttactttattctgggccaat 738  Q
    ||||||||| ||||||||||||||| |||||||||||||    
T  3378688 aattatcgatcatgtacttttacttcattctgggccaat 3378726  T

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Target: chr1; HSP #22
Raw Score: 30; E-Value: 0.0000003
Query Start/End: Original strand, 17 - 54
Target Start/End: Original strand, 2018807 - 2018844
Alignment:
Q  17 agtcttcttatgtgtaatgttttaacatgcattccatg 54  Q
    |||||| || ||||||||||||||||||||||||||||    
T  2018807 agtcttattctgtgtaatgttttaacatgcattccatg 2018844  T

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Target: chr1; HSP #23
Raw Score: 30; E-Value: 0.0000003
Query Start/End: Original strand, 700 - 757
Target Start/End: Complemental strand, 6592583 - 6592526
Alignment:
Q  700 aattatcgaccatgtacttttactttattctgggccaatcaacaagttcaagctctct 757  Q
    |||||| || ||||||||||||||   |||||| |||||||| |||||||||||||||    
T  6592583 aattattgatcatgtacttttactccgttctggaccaatcaaaaagttcaagctctct 6592526  T

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Target: chr2 (Bit Score: 59; Significance: 1e-24; HSPs: 8)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 59; E-Value: 1e-24
Query Start/End: Original strand, 495 - 633
Target Start/End: Original strand, 39273802 - 39273940
Alignment:
Q  495 ggatagaattagtgttttaccagttgatgtaatagaccggattttgtcatgcttgccaattagggatgttgtgagaacaagtgttttatcaaacaaatgg 594  Q
    |||||||||||||   ||||| | | |||||||||| | |||| |||| ||||||||||||||||| |  ||||||||||||||||| || | | |||||    
T  39273802 ggatagaattagttgcttaccgggtcatgtaatagatcagattctgtcttgcttgccaattagggaagcagtgagaacaagtgttttgtccagccaatgg 39273901  T
Q  595 aggtacaaatggatcacaataccaaatcttgtgtttgat 633  Q
    ||||||||||||  |||| ||||||||||||||||||||    
T  39273902 aggtacaaatggtacacactaccaaatcttgtgtttgat 39273940  T

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Target: chr2; HSP #2
Raw Score: 56; E-Value: 9e-23
Query Start/End: Original strand, 511 - 642
Target Start/End: Original strand, 20934229 - 20934360
Alignment:
Q  511 ttaccagttgatgtaatagaccggattttgtcatgcttgccaattagggatgttgtgagaacaagtgttttatcaaacaaatggaggtacaaatggatca 610  Q
    ||||||| | |||||||||||| |||| || | | ||||||||||||||| |  |||||||||||||||||||| || ||||||||| ||||||||  ||    
T  20934229 ttaccaggtcatgtaatagaccagattctgacttacttgccaattagggaagcagtgagaacaagtgttttatctaaaaaatggaggaacaaatggtaca 20934328  T
Q  611 caataccaaatcttgtgtttgattcacaatgt 642  Q
    || | ||||||||||||||||||  |||||||    
T  20934329 cactcccaaatcttgtgtttgatagacaatgt 20934360  T

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Target: chr2; HSP #3
Raw Score: 53; E-Value: 5e-21
Query Start/End: Original strand, 493 - 633
Target Start/End: Original strand, 20952755 - 20952895
Alignment:
Q  493 ccggatagaattagtgttttaccagttgatgtaatagaccggattttgtcatgcttgccaattagggatgttgtgagaacaagtgttttatcaaacaaat 592  Q
    ||||||||||| |||   ||||||| | |||||||||| | |||| || | | ||||| |||||||||||  |||||||||||||||||||| |  ||||    
T  20952755 ccggatagaataagttgcttaccaggtcatgtaatagatcagattctgacttacttgcaaattagggatgcagtgagaacaagtgttttatctagaaaat 20952854  T
Q  593 ggaggtacaaatggatcacaataccaaatcttgtgtttgat 633  Q
    ||||| ||||||||| |||| | ||||||||||||||||||    
T  20952855 ggaggaacaaatggaacacacttccaaatcttgtgtttgat 20952895  T

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Target: chr2; HSP #4
Raw Score: 47; E-Value: 2e-17
Query Start/End: Original strand, 707 - 761
Target Start/End: Original strand, 20923438 - 20923492
Alignment:
Q  707 gaccatgtacttttactttattctgggccaatcaacaagttcaagctctctgatt 761  Q
    |||||||||||||||||| |||||||||||||||||||||||||| |||||||||    
T  20923438 gaccatgtacttttacttcattctgggccaatcaacaagttcaagatctctgatt 20923492  T

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Target: chr2; HSP #5
Raw Score: 36; E-Value: 0.00000000008
Query Start/End: Original strand, 548 - 650
Target Start/End: Original strand, 20926881 - 20926984
Alignment:
Q  548 tgccaattagggatgttgtgagaacaagtgttttatc-aaacaaatggaggtacaaatggatcacaataccaaatcttgtgtttgattcacaatgtgtgt 646  Q
    ||||||||||||| |  | |||||||||||||||||| ||| ||||||||| ||||| ||  |||| ||||||||||||| ||||||   |||||||| |    
T  20926881 tgccaattagggaagcagcgagaacaagtgttttatctaaaaaaatggaggaacaaagggtacacactaccaaatcttgtctttgatagtcaatgtgtct 20926980  T
Q  647 ctgc 650  Q
    ||||    
T  20926981 ctgc 20926984  T

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Target: chr2; HSP #6
Raw Score: 35; E-Value: 0.0000000003
Query Start/End: Original strand, 710 - 760
Target Start/End: Original strand, 20952962 - 20953012
Alignment:
Q  710 catgtacttttactttattctgggccaatcaacaagttcaagctctctgat 760  Q
    ||||||||||||||| |||||||||||||||||| ||||||| ||| ||||    
T  20952962 catgtacttttacttcattctgggccaatcaacatgttcaagttctatgat 20953012  T

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Target: chr2; HSP #7
Raw Score: 32; E-Value: 0.00000002
Query Start/End: Original strand, 567 - 650
Target Start/End: Original strand, 20923302 - 20923385
Alignment:
Q  567 gagaacaagtgttttatcaaacaaatggaggtacaaatggatcacaataccaaatcttgtgtttgattcacaatgtgtgtctgc 650  Q
    |||||||||||||||||| |||||||||||| | ||||||  ||||  |||  |||||||||| |||  ||||||||| |||||    
T  20923302 gagaacaagtgttttatctaacaaatggaggaaaaaatggtccacacaaccggatcttgtgttcgataaacaatgtgtatctgc 20923385  T

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Target: chr2; HSP #8
Raw Score: 31; E-Value: 0.00000007
Query Start/End: Original strand, 710 - 764
Target Start/End: Original strand, 20927040 - 20927094
Alignment:
Q  710 catgtacttttactttattctgggccaatcaacaagttcaagctctctgattgtg 764  Q
    ||||| ||||||||| ||| |||||||||||||| ||||||| ||||||| ||||    
T  20927040 catgtccttttacttcattatgggccaatcaacatgttcaagttctctgagtgtg 20927094  T

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Target: chr5 (Bit Score: 30; Significance: 0.0000003; HSPs: 1)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 30; E-Value: 0.0000003
Query Start/End: Original strand, 710 - 747
Target Start/End: Original strand, 17969825 - 17969862
Alignment:
Q  710 catgtacttttactttattctgggccaatcaacaagtt 747  Q
    ||||||||||||||| |||| |||||||||||||||||    
T  17969825 catgtacttttacttcattcagggccaatcaacaagtt 17969862  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]



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