View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF4094-2-Insertion-2 (Length: 740)

Name: NF4094-2-Insertion-2
Description: NF4094-2
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF4094-2-Insertion-2
NF4094-2-Insertion-2
[»] chr6 (6 HSPs)
chr6 (11-681)||(34245213-34245877)
chr6 (369-530)||(11113557-11113712)
chr6 (37-134)||(29138801-29138898)
chr6 (69-128)||(34254146-34254205)
chr6 (367-537)||(5403880-5404048)
chr6 (369-537)||(1211848-1212014)
[»] chr5 (17 HSPs)
chr5 (363-537)||(29989957-29990130)
chr5 (361-537)||(38010617-38010792)
chr5 (361-537)||(13086746-13086921)
chr5 (361-537)||(13015374-13015549)
chr5 (362-530)||(13478055-13478222)
chr5 (361-537)||(13421013-13421188)
chr5 (392-540)||(10292897-10293042)
chr5 (368-537)||(11607538-11607705)
chr5 (368-493)||(39570091-39570214)
chr5 (377-537)||(33858542-33858700)
chr5 (418-490)||(37881190-37881262)
chr5 (362-537)||(1826253-1826426)
chr5 (368-537)||(19357266-19357432)
chr5 (499-537)||(42331073-42331111)
chr5 (368-475)||(9827788-9827894)
chr5 (433-487)||(42148210-42148263)
chr5 (392-477)||(33271638-33271721)
[»] chr1 (11 HSPs)
chr1 (363-537)||(8809643-8809816)
chr1 (365-530)||(35998249-35998413)
chr1 (369-466)||(6223052-6223148)
chr1 (362-495)||(29119370-29119501)
chr1 (468-528)||(35534501-35534561)
chr1 (419-518)||(8462178-8462276)
chr1 (368-495)||(32676136-32676261)
chr1 (368-462)||(25161309-25161402)
chr1 (369-414)||(5581281-5581326)
chr1 (421-462)||(8555481-8555522)
chr1 (453-506)||(16679776-16679829)
[»] chr3 (15 HSPs)
chr3 (363-537)||(42664668-42664841)
chr3 (363-537)||(47186170-47186343)
chr3 (363-537)||(31187073-31187246)
chr3 (364-537)||(34029294-34029466)
chr3 (368-540)||(44380254-44380424)
chr3 (367-490)||(47426349-47426470)
chr3 (363-417)||(21963077-21963131)
chr3 (419-495)||(39498716-39498790)
chr3 (369-482)||(50934501-50934613)
chr3 (372-495)||(33509684-33509805)
chr3 (433-495)||(35094612-35094673)
chr3 (434-487)||(6023011-6023064)
chr3 (418-487)||(17466322-17466390)
chr3 (474-522)||(25859019-25859067)
chr3 (363-408)||(34955206-34955251)
[»] chr4 (12 HSPs)
chr4 (363-537)||(52012773-52012946)
chr4 (367-537)||(9799366-9799535)
chr4 (363-512)||(47943153-47943302)
chr4 (368-527)||(21260794-21260951)
chr4 (454-529)||(46720200-46720276)
chr4 (368-495)||(22343337-22343462)
chr4 (362-537)||(12473698-12473871)
chr4 (362-537)||(12528107-12528280)
chr4 (369-495)||(33249420-33249544)
chr4 (368-495)||(35869617-35869742)
chr4 (392-462)||(46719954-46720023)
chr4 (369-466)||(49999662-49999758)
[»] chr8 (8 HSPs)
chr8 (361-517)||(1514796-1514951)
chr8 (369-522)||(32825854-32826005)
chr8 (368-537)||(41179567-41179734)
chr8 (377-495)||(18168394-18168511)
chr8 (377-495)||(18631951-18632068)
chr8 (419-487)||(4708361-4708428)
chr8 (433-495)||(11254074-11254135)
chr8 (367-537)||(24337834-24338002)
[»] chr2 (9 HSPs)
chr2 (392-528)||(10163506-10163641)
chr2 (453-537)||(3668013-3668097)
chr2 (368-537)||(34392085-34392252)
chr2 (368-465)||(21603959-21604055)
chr2 (368-473)||(37357988-37358092)
chr2 (418-530)||(23863814-23863925)
chr2 (433-540)||(4779649-4779755)
chr2 (433-530)||(41095797-41095893)
chr2 (371-536)||(7381695-7381857)
[»] chr7 (7 HSPs)
chr7 (368-529)||(35341536-35341695)
chr7 (418-537)||(48072436-48072554)
chr7 (421-495)||(23178475-23178549)
chr7 (430-495)||(32694616-32694680)
chr7 (367-466)||(40893115-40893214)
chr7 (367-490)||(48250153-48250274)
chr7 (418-472)||(40856480-40856534)
[»] scaffold0032 (1 HSPs)
scaffold0032 (368-518)||(34194-34341)
[»] scaffold0041 (1 HSPs)
scaffold0041 (367-466)||(73070-73169)
[»] scaffold0519 (1 HSPs)
scaffold0519 (433-495)||(11258-11319)
[»] scaffold0263 (1 HSPs)
scaffold0263 (418-471)||(23168-23221)


Alignment Details
Target: chr6 (Bit Score: 556; Significance: 0; HSPs: 6)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 556; E-Value: 0
Query Start/End: Original strand, 11 - 681
Target Start/End: Original strand, 34245213 - 34245877
Alignment:
Q  11 tacccatttcaatttcatatcaactcgtttctactgtaattgcatgctattcagttaatctaattctatgcatttgtttagataagtggttgatggtcat 110  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  34245213 tacccatttcaatttcatatcaactcgtttctactgtaattgcatgctattcagttaatctaattctatgcatttgtttagataagtggttgatggtcat 34245312  T
Q  111 ttaggagattttcttaaatcacacggcttgggtttttaataagtaaattgagaaactatttgacttttgaaattttagaattctctatcgatatttttgt 210  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||  ||||||||||||||||||||||||||||||||||||||||||||    
T  34245313 ttaggagattttcttaaatcacacggcttgggtttttaataagtaaattgagaa--tatttgacttttgaaattttagaattctctatcgatatttttgt 34245410  T
Q  211 ggcctacatataactatttttgtaagttgtatcatttctaaagcttaggacttttacgtcttattaaattttatagaattacggatataaatgtgattat 310  Q
    |||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  34245411 ggcctacatataactatttt-gtaagttgtatcatttctaaagcttaggacttttacgtcttattaaattttatagaattacggatataaatgtgattat 34245509  T
Q  311 gtatgtgcattgggatatggagtgtgtttgcatgtatgaacacatctatgacggacaccacttgtataccattaaggtattaatgttatataacattgac 410  Q
    ||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||    
T  34245510 gtatgtgcattgggatatggagtgtgtttacatgtatgaacacatctatgacggacaccacttgtgtaccattaaggtattaatgttatataacattgac 34245609  T
Q  411 caataaggagtgtgtcacgtatcaatgttattttataaatattttatttgatatatgttttttaaagtgtgtgccacatgacacaccttaattggctaat 510  Q
    ||||||  |||||| |||||| |||||||| |||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  34245610 caataa-aagtgtgccacgtaccaatgttactttataaatactttatttgatatatgttttttaaagtgtgtgccacatgacacaccttaattggctaat 34245708  T
Q  511 gttatataacataatggtacgcaagtgttaccacatctatgacgtaattgaattttgttgtatcacatgctagaaatttttgagtagaattgttgatgaa 610  Q
    ||||||||| |||||||||| ||||||||| | |||||||||| |||||||||||||||||||||||||||||||| |||||||||||||||||||||||    
T  34245709 gttatataatataatggtacacaagtgttatcccatctatgacctaattgaattttgttgtatcacatgctagaaa-ttttgagtagaattgttgatgaa 34245807  T
Q  611 cttctttcgccatatataattcatgttaaatttttgtctttaatgttggtaaaagacttataaaataaatt 681  Q
    ||||| ||| ||||||||||||||||| || |||||||||  ||||||| |||||||||||||||||||||    
T  34245808 cttctctcgtcatatataattcatgtttaa-ttttgtcttagatgttgggaaaagacttataaaataaatt 34245877  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #2
Raw Score: 50; E-Value: 3e-19
Query Start/End: Original strand, 369 - 530
Target Start/End: Original strand, 11113557 - 11113712
Alignment:
Q  369 cacttgtataccattaaggtattaatgttatataacattgaccaataaggagtgtgtcacgtatcaatgttattttataaatattttatttgatatatgt 468  Q
    ||||||| |||||||||||||  |||| |||||||||||||| |||||| |||||||||| ||  ||||||| ||| ||| |  ||||||||||     |    
T  11113557 cacttgtgtaccattaaggtaccaatgctatataacattgactaataag-agtgtgtcacatactaatgttactttgtaagtgctttatttgat-----t 11113650  T
Q  469 tttttaaagtgtgtgccacatgacacaccttaattggctaatgttatataacataatggtac 530  Q
    |||||||||  || |||||||| ||||||||||||| | ||||||||||| ||| |||||||    
T  11113651 tttttaaaggatgcgccacatggcacaccttaattgaccaatgttatataccattatggtac 11113712  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #3
Raw Score: 46; E-Value: 7e-17
Query Start/End: Original strand, 37 - 134
Target Start/End: Original strand, 29138801 - 29138898
Alignment:
Q  37 gtttctactgtaattgcatgctattcagttaatctaattctatgcatttgtttagataagtggttgatggtcatttaggagattttcttaaatcacac 134  Q
    |||||| || |||||||||||||||  |||| |   |||||||| ||||||||||||||||||||||||||||||||| || ||||||  ||||||||    
T  29138801 gtttctgctataattgcatgctatttggttacttggattctatgtatttgtttagataagtggttgatggtcatttagtagtttttctccaatcacac 29138898  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #4
Raw Score: 44; E-Value: 0.000000000000001
Query Start/End: Original strand, 69 - 128
Target Start/End: Original strand, 34254146 - 34254205
Alignment:
Q  69 tctaattctatgcatttgtttagataagtggttgatggtcatttaggagattttcttaaa 128  Q
    ||||||||||||||||| |||||||||| | |||||||||||| ||||||||||||||||    
T  34254146 tctaattctatgcatttttttagataagagattgatggtcattcaggagattttcttaaa 34254205  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #5
Raw Score: 39; E-Value: 0.000000000001
Query Start/End: Original strand, 367 - 537
Target Start/End: Complemental strand, 5404048 - 5403880
Alignment:
Q  367 accacttgtataccattaaggtattaatgttatataacattgaccaataaggagtgtgtcacgtatcaatgttattttataaatattttatttgatatat 466  Q
    ||||||||| ||||||||||||| ||||| ||||||  ||||  || | || ||| || ||| || |||||||| |||||| || |||||||||||||||    
T  5404048 accacttgtgtaccattaaggtactaatggtatatattattggtcagttag-agtctgccacctaccaatgttactttatagatgttttatttgatatat 5403950  T
Q  467 gttttttaaagtgtgtgccacatgacacaccttaattggctaatgttatataacataatggtacgcaagtg 537  Q
     |||||||||| | ||  |||||||||||   |||||||  |||| |||||| ||| ||||||| ||||||    
T  5403949 -ttttttaaagggcgtatcacatgacacattctaattggacaatggtatataccattatggtacacaagtg 5403880  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #6
Raw Score: 33; E-Value: 0.000000004
Query Start/End: Original strand, 369 - 537
Target Start/End: Complemental strand, 1212014 - 1211848
Alignment:
Q  369 cacttgtataccattaaggtattaatgttatataacattgaccaataaggagtgtgtcacgtatcaatgttattttataaatattttatttgatatatgt 468  Q
    ||||||| |||||||||||||  |||| |||||| ||||| | ||| | | ||||| ||| | ||||||||| |||||  ||  |||||||||||||| |    
T  1212014 cacttgtgtaccattaaggtaccaatggtatataccattggctaatta-gtgtgtgccacctttcaatgttactttatcgatgctttatttgatatat-t 1211917  T
Q  469 tttttaaagtgtgtgccacatgacacaccttaattggctaatgttatataacataatggtacgcaagtg 537  Q
    ||||||||| ||||||||| || ||||   |||| ||  |||| |||||| ||| ||||||| ||||||    
T  1211916 tttttaaagggtgtgccacgtggcacattctaatggggcaatggtatataccattatggtacacaagtg 1211848  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5 (Bit Score: 131; Significance: 1e-67; HSPs: 17)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 131; E-Value: 1e-67
Query Start/End: Original strand, 363 - 537
Target Start/End: Original strand, 29989957 - 29990130
Alignment:
Q  363 ggacaccacttgtataccattaaggtattaatgttatataacattgaccaataaggagtgtgtcacgtatcaatgttattttataaatattttatttgat 462  Q
    ||||||||||||| |||||||||||||| |||||||||||||||||||||||||| |||||| ||| || |||||||| ||||||||| |||||||||||    
T  29989957 ggacaccacttgtgtaccattaaggtatcaatgttatataacattgaccaataag-agtgtgccacataccaatgttactttataaatgttttatttgat 29990055  T
Q  463 atatgttttttaaagtgtgtgccacatgacacaccttaattggctaatgttatataacataatggtacgcaagtg 537  Q
    |||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||| ||||||    
T  29990056 atatgttttttaaagtgtgtgccacatgtcacaccttaattggctaatgttatataacataatggtacacaagtg 29990130  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #2
Raw Score: 125; E-Value: 5e-64
Query Start/End: Original strand, 361 - 537
Target Start/End: Complemental strand, 38010792 - 38010617
Alignment:
Q  361 acggacaccacttgtataccattaaggtattaatgttatataacattgaccaataaggagtgtgtcacgtatcaatgttattttataaatattttatttg 460  Q
    ||||||||||||||| |||||||||||||  ||||||||||||||||| |||||||| |||||| ||| || |||||||| |||||||||| ||||||||    
T  38010792 acggacaccacttgtgtaccattaaggtaccaatgttatataacattggccaataag-agtgtgccacataccaatgttactttataaatactttatttg 38010694  T
Q  461 atatatgttttttaaagtgtgtgccacatgacacaccttaattggctaatgttatataacataatggtacgcaagtg 537  Q
    |||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||| ||||||    
T  38010693 atatatgttttttaaagtgtgtgccacatggcacaccttaattggctaatgttatataacataatggtacacaagtg 38010617  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #3
Raw Score: 121; E-Value: 1e-61
Query Start/End: Original strand, 361 - 537
Target Start/End: Original strand, 13086746 - 13086921
Alignment:
Q  361 acggacaccacttgtataccattaaggtattaatgttatataacattgaccaataaggagtgtgtcacgtatcaatgttattttataaatattttatttg 460  Q
    ||||||||||||||| |||||||||||||  |||||||||||||||||||||||||| |||||| ||| || ||||||||||||||||||||||||||||    
T  13086746 acggacaccacttgtgtaccattaaggtaccaatgttatataacattgaccaataag-agtgtgccacataccaatgttattttataaatattttatttg 13086844  T
Q  461 atatatgttttttaaagtgtgtgccacatgacacaccttaattggctaatgttatataacataatggtacgcaagtg 537  Q
    |||| | ||||||||||||||||||||||| |||||||||||| |||||||||||||||||||||| || |||||||    
T  13086845 atatgtattttttaaagtgtgtgccacatgtcacaccttaattagctaatgttatataacataatgataagcaagtg 13086921  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #4
Raw Score: 117; E-Value: 3e-59
Query Start/End: Original strand, 361 - 537
Target Start/End: Original strand, 13015374 - 13015549
Alignment:
Q  361 acggacaccacttgtataccattaaggtattaatgttatataacattgaccaataaggagtgtgtcacgtatcaatgttattttataaatattttatttg 460  Q
    ||||| ||||||||| |||||||||||||  |||||||||||||||||||||||||| |||||| ||| || |||||||| |||||||||||||||||||    
T  13015374 acggataccacttgtgtaccattaaggtaccaatgttatataacattgaccaataag-agtgtgccacataccaatgttactttataaatattttatttg 13015472  T
Q  461 atatatgttttttaaagtgtgtgccacatgacacaccttaattggctaatgttatataacataatggtacgcaagtg 537  Q
    |||||| ||||||||||| ||||||||||| |||| |||||||||||||||||||||||||||||| ||||||||||    
T  13015473 atatatattttttaaagtatgtgccacatgtcacatcttaattggctaatgttatataacataatgatacgcaagtg 13015549  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #5
Raw Score: 113; E-Value: 8e-57
Query Start/End: Original strand, 362 - 530
Target Start/End: Complemental strand, 13478222 - 13478055
Alignment:
Q  362 cggacaccacttgtataccattaaggtattaatgttatataacattgaccaataaggagtgtgtcacgtatcaatgttattttataaatattttatttga 461  Q
    |||||||||||||| ||||||||||| |  |||||||||||||||||||||||||| |||||| ||| || || ||||| ||||||||||||||||||||    
T  13478222 cggacaccacttgtgtaccattaaggaaccaatgttatataacattgaccaataag-agtgtgccacataccattgttactttataaatattttatttga 13478124  T
Q  462 tatatgttttttaaagtgtgtgccacatgacacaccttaattggctaatgttatataacataatggtac 530  Q
    ||||||||||||||||||||||||||||| |||||||||||| ||||||||||||||||||||| ||||    
T  13478123 tatatgttttttaaagtgtgtgccacatgtcacaccttaattagctaatgttatataacataatcgtac 13478055  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #6
Raw Score: 109; E-Value: 2e-54
Query Start/End: Original strand, 361 - 537
Target Start/End: Complemental strand, 13421188 - 13421013
Alignment:
Q  361 acggacaccacttgtataccattaaggtattaatgttatataacattgaccaataaggagtgtgtcacgtatcaatgttattttataaatattttatttg 460  Q
    ||||||| ||||||| |||||||||||||| |||||||||||||||||| ||||||| ||||| |||  ||||||||||| |||||||||  |||||||     
T  13421188 acggacatcacttgtgtaccattaaggtatcaatgttatataacattgatcaataag-agtgtatcaaatatcaatgttactttataaatgctttattta 13421090  T
Q  461 atatatgttttttaaagtgtgtgccacatgacacaccttaattggctaatgttatataacataatggtacgcaagtg 537  Q
    |||||||||||||||||||| ||||||||||||||||||| ||| ||||||||||||||||||||||||| ||||||    
T  13421089 atatatgttttttaaagtgtatgccacatgacacaccttacttgactaatgttatataacataatggtacacaagtg 13421013  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #7
Raw Score: 70; E-Value: 4e-31
Query Start/End: Original strand, 392 - 540
Target Start/End: Original strand, 10292897 - 10293042
Alignment:
Q  392 aatgttatataacattgaccaataaggagtgtgtcacgtatcaatgttattttataaatattttatttgatatatgttttttaaagtgtgtgccacatga 491  Q
    ||||||||||||||||| |||||||| | |||| ||||||  ||||||||||| ||| | ||||||||||||| |  ||||||||| ||||||||| ||     
T  10292897 aatgttatataacattggccaataagaa-tgtgccacgtactaatgttattttgtaagtgttttatttgatattt--tttttaaagggtgtgccacgtgg 10292993  T
Q  492 cacaccttaattggctaatgttatataacataatggtacgcaagtgtta 540  Q
    ||||||||||||||| ||||||||||||||| ||||||| |||||||||    
T  10292994 cacaccttaattggccaatgttatataacattatggtacacaagtgtta 10293042  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #8
Raw Score: 50; E-Value: 3e-19
Query Start/End: Original strand, 368 - 537
Target Start/End: Complemental strand, 11607705 - 11607538
Alignment:
Q  368 ccacttgtataccattaaggtattaatgttatataacattgaccaataaggagtgtgtcacgtatcaatgttattttataaatattttatttgatatatg 467  Q
    ||||||||||||||||||||||  |||| |||||| ||||||||||| |  |||||| ||| || |||| ||| ||||||||| ||||||||||||||      
T  11607705 ccacttgtataccattaaggtaccaatggtatataccattgaccaatta-tagtgtgccacctaccaatattactttataaatgttttatttgatata-c 11607608  T
Q  468 ttttttaaagtgtgtgccacatgacacaccttaattggctaatgttatataacataatggtacgcaagtg 537  Q
    |||||||||| |||||||||  | ||||   |||||||  |||| |||||| ||| ||||||| ||||||    
T  11607607 ttttttaaagggtgtgccacgggccacattctaattggacaatggtatatatcattatggtacacaagtg 11607538  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #9
Raw Score: 50; E-Value: 3e-19
Query Start/End: Original strand, 368 - 493
Target Start/End: Complemental strand, 39570214 - 39570091
Alignment:
Q  368 ccacttgtataccattaaggtattaatgttatataacattgaccaataaggagtgtgtcacgtatcaatgttattttataaatattttatttgatatatg 467  Q
    |||||||| || |||||| |||| |||| |||||| ||||| ||||| || |||||||||| || |||||||| ||||||||| ||||||||||||||      
T  39570214 ccacttgtgtatcattaaagtatcaatggtatataccattggccaattag-agtgtgtcacctaccaatgttactttataaatgttttatttgatata-c 39570117  T
Q  468 ttttttaaagtgtgtgccacatgaca 493  Q
    |||||||||| ||||||||| |||||    
T  39570116 ttttttaaagggtgtgccacctgaca 39570091  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #10
Raw Score: 49; E-Value: 1e-18
Query Start/End: Original strand, 377 - 537
Target Start/End: Complemental strand, 33858700 - 33858542
Alignment:
Q  377 taccattaaggtattaatgttatataacattgaccaataaggagtgtgtcacgtatcaatgttattttataaatattttatttgatatatgttttttaaa 476  Q
    |||||||||||||  |||  |||||| ||||||||||| |  |||||| ||| || |||||||| ||||||||| ||||||||||||||  |||||||||    
T  33858700 taccattaaggtaccaatagtatatatcattgaccaattat-agtgtgccacctaccaatgttactttataaatgttttatttgatata-cttttttaaa 33858603  T
Q  477 gtgtgtgccacatgacacaccttaattggctaatgttatataacataatggtacgcaagtg 537  Q
    | ||||||||| |||||||   |||||||  |||| |||||| ||| ||||||| ||||||    
T  33858602 gggtgtgccacgtgacacattctaattgggcaatggtatataccattatggtacacaagtg 33858542  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #11
Raw Score: 49; E-Value: 1e-18
Query Start/End: Original strand, 418 - 490
Target Start/End: Original strand, 37881190 - 37881262
Alignment:
Q  418 gagtgtgtcacgtatcaatgttattttataaatattttatttgatatatgttttttaaagtgtgtgccacatg 490  Q
    ||||||| ||| || |||||||| ||||||||||||||||||||||||||||||| ||| |||||||||||||    
T  37881190 gagtgtgccacataccaatgttactttataaatattttatttgatatatgtttttcaaaatgtgtgccacatg 37881262  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #12
Raw Score: 40; E-Value: 0.0000000000003
Query Start/End: Original strand, 362 - 537
Target Start/End: Original strand, 1826253 - 1826426
Alignment:
Q  362 cggacaccacttgtataccattaaggtattaatgttatataacattgaccaataaggagtgtgtcacgtatcaatgttattttataaatattttatttga 461  Q
    |||| ||||||||| ||||||||| |||  |||| |||||| |||||  |||| || |||||||||| || |||| ||| ||| || ||  |||||||||    
T  1826253 cggataccacttgtgtaccattaaagtaccaatggtatataccattggtcaattag-agtgtgtcacctaccaatattactttgtagatgctttatttga 1826351  T
Q  462 tatatgttttttaaagtgtgtgccacatgacacaccttaattggctaatgttatataacataatggtacgcaagtg 537  Q
    ||||| ||||||||||| ||||||||||| ||||  |||||||   |||| |||||| ||| ||| ||| ||||||    
T  1826352 tatat-ttttttaaagtatgtgccacatggcacattttaattgaacaatgatatatatcattatgatacacaagtg 1826426  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #13
Raw Score: 39; E-Value: 0.000000000001
Query Start/End: Original strand, 368 - 537
Target Start/End: Complemental strand, 19357432 - 19357266
Alignment:
Q  368 ccacttgtataccattaaggtattaatgttatataacattgaccaataaggagtgtgtcacgtatcaatgttattttataaatattttatttgatatatg 467  Q
    |||||||| |||||||| ||||  |||| |||||| ||||| ||||| || |||||| ||| || |||| ||| |||||||||  |||||||||||||      
T  19357432 ccacttgtgtaccattagggtaccaatggtatataccattggccaattag-agtgtgccacctaccaatattactttataaatgctttatttgatata-- 19357336  T
Q  468 ttttttaaagtgtgtgccacatgacacaccttaattggctaatgttatataacataatggtacgcaagtg 537  Q
    ||||||||||  ||| |||| |||||||   |||||||  |||| |||||| ||| ||||||| ||||||    
T  19357335 ttttttaaaggatgtcccacgtgacacattctaattggacaatgatatataccattatggtacacaagtg 19357266  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #14
Raw Score: 35; E-Value: 0.0000000003
Query Start/End: Original strand, 499 - 537
Target Start/End: Complemental strand, 42331111 - 42331073
Alignment:
Q  499 taattggctaatgttatataacataatggtacgcaagtg 537  Q
    |||||||||||||||||||||||||||||||| ||||||    
T  42331111 taattggctaatgttatataacataatggtacacaagtg 42331073  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #15
Raw Score: 32; E-Value: 0.00000002
Query Start/End: Original strand, 368 - 475
Target Start/End: Original strand, 9827788 - 9827894
Alignment:
Q  368 ccacttgtataccattaaggtattaatgttatataacattgaccaataaggagtgtgtcacgtatcaatgttattttataaatattttatttgatatatg 467  Q
    |||||||| |||||||||||||  |||| |||||| | ||   |||| || |||||  ||| || |||| ||| |||||||||||||||||||||||||     
T  9827788 ccacttgtgtaccattaaggtaccaatggtatatacctttagtcaattag-agtgtaccacctaccaatattactttataaatattttatttgatatatc 9827886  T
Q  468 ttttttaa 475  Q
    ||||||||    
T  9827887 ttttttaa 9827894  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #16
Raw Score: 31; E-Value: 0.00000007
Query Start/End: Original strand, 433 - 487
Target Start/End: Original strand, 42148210 - 42148263
Alignment:
Q  433 caatgttattttataaatattttatttgatatatgttttttaaagtgtgtgccac 487  Q
    |||||||| ||||||||| ||||||||||||||| |||||||||| |||| ||||    
T  42148210 caatgttactttataaatgttttatttgatatat-ttttttaaagggtgtaccac 42148263  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #17
Raw Score: 30; E-Value: 0.0000003
Query Start/End: Original strand, 392 - 477
Target Start/End: Original strand, 33271638 - 33271721
Alignment:
Q  392 aatgttatataacattgaccaataaggagtgtgtcacgtatcaatgttattttataaatattttatttgatatatgttttttaaag 477  Q
    |||| |||||| ||||| ||||| || |||||||||  ||||||||||| || ||||||  |||||||||||||| ||||||||||    
T  33271638 aatgatatatatcattggccaattag-agtgtgtcatctatcaatgttacttgataaatgctttatttgatatat-ttttttaaag 33271721  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1 (Bit Score: 131; Significance: 1e-67; HSPs: 11)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 131; E-Value: 1e-67
Query Start/End: Original strand, 363 - 537
Target Start/End: Complemental strand, 8809816 - 8809643
Alignment:
Q  363 ggacaccacttgtataccattaaggtattaatgttatataacattgaccaataaggagtgtgtcacgtatcaatgttattttataaatattttatttgat 462  Q
    ||||||||||||| |||||||||||||  |||||||||||||||||||||||||| |||||| |||||| |||||||| ||||||||| |||||||||||    
T  8809816 ggacaccacttgtgtaccattaaggtaccaatgttatataacattgaccaataag-agtgtgccacgtaccaatgttactttataaatgttttatttgat 8809718  T
Q  463 atatgttttttaaagtgtgtgccacatgacacaccttaattggctaatgttatataacataatggtacgcaagtg 537  Q
    |||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||| ||||||    
T  8809717 atatgttttttaaagtgtgtgccacatgtcacaccttaattggctaatgttatataacataatggtacacaagtg 8809643  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #2
Raw Score: 114; E-Value: 2e-57
Query Start/End: Original strand, 365 - 530
Target Start/End: Original strand, 35998249 - 35998413
Alignment:
Q  365 acaccacttgtataccattaaggtattaatgttatataacattgaccaataaggagtgtgtcacgtatcaatgttattttataaatattttatttgatat 464  Q
    |||||||||||||||||||||||||  ||||||||||||||||||  |||||| |||||| ||| ||||||||||||||||||| | |||||||| ||||    
T  35998249 acaccacttgtataccattaaggtaccaatgttatataacattgattaataag-agtgtgccacatatcaatgttattttataagtgttttattttatat 35998347  T
Q  465 atgttttttaaagtgtgtgccacatgacacaccttaattggctaatgttatataacataatggtac 530  Q
    |||||||||||||||||||||||||| |||| ||||||||||||||||||||||||||||||||||    
T  35998348 atgttttttaaagtgtgtgccacatggcacatcttaattggctaatgttatataacataatggtac 35998413  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #3
Raw Score: 50; E-Value: 3e-19
Query Start/End: Original strand, 369 - 466
Target Start/End: Original strand, 6223052 - 6223148
Alignment:
Q  369 cacttgtataccattaaggtattaatgttatataacattgaccaataaggagtgtgtcacgtatcaatgttattttataaatattttatttgatatat 466  Q
    ||||||| ||||||||| |||| ||||||||||| |||||| |||| | | ||||||||  ||||||||||||||||||| |||||||||||||||||    
T  6223052 cacttgtgtaccattaaagtatcaatgttatatatcattgatcaattaag-gtgtgtcatatatcaatgttattttataagtattttatttgatatat 6223148  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #4
Raw Score: 50; E-Value: 3e-19
Query Start/End: Original strand, 362 - 495
Target Start/End: Complemental strand, 29119501 - 29119370
Alignment:
Q  362 cggacaccacttgtataccattaaggtattaatgttatataacattgaccaataaggagtgtgtcacgtatcaatgttattttataaatattttatttga 461  Q
    |||| ||||||||| |||||||||||||  |||| |||||| ||||| ||||| | ||||||| ||| ||||| ||||| |||||| ||  |||||||||    
T  29119501 cggataccacttgtgtaccattaaggtaccaatggtatataccattggccaatta-gagtgtgccacctatcattgttactttatagatgctttatttga 29119403  T
Q  462 tatatgttttttaaagtgtgtgccacatgacaca 495  Q
    ||||| |||||||||| |||||||||||| ||||    
T  29119402 tatat-ttttttaaagggtgtgccacatggcaca 29119370  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #5
Raw Score: 45; E-Value: 3e-16
Query Start/End: Original strand, 468 - 528
Target Start/End: Original strand, 35534501 - 35534561
Alignment:
Q  468 ttttttaaagtgtgtgccacatgacacaccttaattggctaatgttatataacataatggt 528  Q
    |||||||||| |||||||||||||||||||||||||||| ||| ||||||||||| |||||    
T  35534501 ttttttaaagggtgtgccacatgacacaccttaattggccaatattatataacattatggt 35534561  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #6
Raw Score: 36; E-Value: 0.00000000007
Query Start/End: Original strand, 419 - 518
Target Start/End: Original strand, 8462178 - 8462276
Alignment:
Q  419 agtgtgtcacgtatcaatgttattttataaatattttatttgatatatgttttttaaagtgtgtgccacatgacacaccttaattggctaatgttatata 518  Q
    |||||| ||| || |||||||||||||||||| |||||||| |||||  |||||||||| | ||||||| |||||||  ||||||||  |||| ||||||    
T  8462178 agtgtgccacctaccaatgttattttataaatgttttatttaatata-cttttttaaagggcgtgccacgtgacacattttaattggacaatggtatata 8462276  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #7
Raw Score: 36; E-Value: 0.00000000007
Query Start/End: Original strand, 368 - 495
Target Start/End: Original strand, 32676136 - 32676261
Alignment:
Q  368 ccacttgtataccattaaggtattaatgttatataacattgaccaataaggagtgtgtcacgtatcaatgttattttataaatattttatttgatatatg 467  Q
    |||||||| |||||||||||||  |||| |||||| ||||| ||||| || | ||   ||| || |||||||| |||||||||  ||||||||||||||     
T  32676136 ccacttgtgtaccattaaggtaccaatggtatataccattggccaattagaa-tgcaccacctaccaatgttactttataaatgctttatttgatatat- 32676233  T
Q  468 ttttttaaagtgtgtgccacatgacaca 495  Q
    ||||||||||  ||||||||||| ||||    
T  32676234 ttttttaaagcatgtgccacatggcaca 32676261  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #8
Raw Score: 35; E-Value: 0.0000000003
Query Start/End: Original strand, 368 - 462
Target Start/End: Original strand, 25161309 - 25161402
Alignment:
Q  368 ccacttgtataccattaaggtattaatgttatataacattgaccaataaggagtgtgtcacgtatcaatgttattttataaatattttatttgat 462  Q
    |||||||| ||||||||| || | |||| |||||| ||||||||||| |  |||||| ||| || |||||||| ||||||||| |||||||||||    
T  25161309 ccacttgtgtaccattaaagtctcaatggtatataccattgaccaattac-agtgtgccacctaacaatgttactttataaatgttttatttgat 25161402  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #9
Raw Score: 30; E-Value: 0.0000003
Query Start/End: Original strand, 369 - 414
Target Start/End: Original strand, 5581281 - 5581326
Alignment:
Q  369 cacttgtataccattaaggtattaatgttatataacattgaccaat 414  Q
    ||||||| |||||||| | || ||||||||||||||||||||||||    
T  5581281 cacttgtgtaccattaggatactaatgttatataacattgaccaat 5581326  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #10
Raw Score: 30; E-Value: 0.0000003
Query Start/End: Original strand, 421 - 462
Target Start/End: Original strand, 8555481 - 8555522
Alignment:
Q  421 tgtgtcacgtatcaatgttattttataaatattttatttgat 462  Q
    |||||||| || |||||||||||||||||| |||||||||||    
T  8555481 tgtgtcacataccaatgttattttataaatgttttatttgat 8555522  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #11
Raw Score: 30; E-Value: 0.0000003
Query Start/End: Original strand, 453 - 506
Target Start/End: Original strand, 16679776 - 16679829
Alignment:
Q  453 tttatttgatatatgttttttaaagtgtgtgccacatgacacaccttaattggc 506  Q
    |||||||||||||| |||||||||| ||||| ||| ||||||| | ||||||||    
T  16679776 tttatttgatatatattttttaaagggtgtgtcacgtgacacatcctaattggc 16679829  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3 (Bit Score: 123; Significance: 8e-63; HSPs: 15)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 123; E-Value: 8e-63
Query Start/End: Original strand, 363 - 537
Target Start/End: Original strand, 42664668 - 42664841
Alignment:
Q  363 ggacaccacttgtataccattaaggtattaatgttatataacattgaccaataaggagtgtgtcacgtatcaatgttattttataaatattttatttgat 462  Q
    ||||||||||||| |||||||||||||  || ||||||||||||||||||||||| |||||| ||| || |||||||||||||||||| |||||||||||    
T  42664668 ggacaccacttgtgtaccattaaggtaccaaagttatataacattgaccaataag-agtgtgccacataccaatgttattttataaatgttttatttgat 42664766  T
Q  463 atatgttttttaaagtgtgtgccacatgacacaccttaattggctaatgttatataacataatggtacgcaagtg 537  Q
    |||||||||||||||||||||||||||| |||||||||||| |||||||||||||||||||||||||| ||||||    
T  42664767 atatgttttttaaagtgtgtgccacatgtcacaccttaattagctaatgttatataacataatggtacacaagtg 42664841  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #2
Raw Score: 123; E-Value: 8e-63
Query Start/End: Original strand, 363 - 537
Target Start/End: Original strand, 47186170 - 47186343
Alignment:
Q  363 ggacaccacttgtataccattaaggtattaatgttatataacattgaccaataaggagtgtgtcacgtatcaatgttattttataaatattttatttgat 462  Q
    ||||||||||||| |||||||||||||  ||||||||||||||||| |||||||| |||||| ||| || |||||||| |||||||||| ||||||||||    
T  47186170 ggacaccacttgtgtaccattaaggtaccaatgttatataacattggccaataag-agtgtgccacataccaatgttactttataaatactttatttgat 47186268  T
Q  463 atatgttttttaaagtgtgtgccacatgacacaccttaattggctaatgttatataacataatggtacgcaagtg 537  Q
    |||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||| ||||||    
T  47186269 atatgttttttaaagtgtgtgccacatggcacaccttaattggctaatgttatataacataatggtacacaagtg 47186343  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #3
Raw Score: 119; E-Value: 2e-60
Query Start/End: Original strand, 363 - 537
Target Start/End: Complemental strand, 31187246 - 31187073
Alignment:
Q  363 ggacaccacttgtataccattaaggtattaatgttatataacattgaccaataaggagtgtgtcacgtatcaatgttattttataaatattttatttgat 462  Q
    ||||||||||| | |||||||||||||  |||||||||||||||||||||||||| |||||| ||| || |||||||| ||||||||| |||||||||||    
T  31187246 ggacaccacttatgtaccattaaggtaccaatgttatataacattgaccaataag-agtgtgccacataccaatgttactttataaatgttttatttgat 31187148  T
Q  463 atatgttttttaaagtgtgtgccacatgacacaccttaattggctaatgttatataacataatggtacgcaagtg 537  Q
    |||| ||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||| ||||||    
T  31187147 atatattttttaaagtgtgtgccacatgtcacaccttaattggctaatgttatataacataatggtacacaagtg 31187073  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #4
Raw Score: 110; E-Value: 5e-55
Query Start/End: Original strand, 364 - 537
Target Start/End: Complemental strand, 34029466 - 34029294
Alignment:
Q  364 gacaccacttgtataccattaaggtattaatgttatataacattgaccaataaggagtgtgtcacgtatcaatgttattttataaatattttatttgata 463  Q
    |||||||||||| |||||||||||||  |||||||||||||||||| ||||||| |||||| ||| ||  ||||||| ||||||||| ||||||||||||    
T  34029466 gacaccacttgtttaccattaaggtaccaatgttatataacattgatcaataag-agtgtgccacatactaatgttactttataaatgttttatttgata 34029368  T
Q  464 tatgttttttaaagtgtgtgccacatgacacaccttaattggctaatgttatataacataatggtacgcaagtg 537  Q
    |||||||||||||||||||| |||||  ||||||||||||||||||||||||||||||||||||||| ||||||    
T  34029367 tatgttttttaaagtgtgtgtcacatatcacaccttaattggctaatgttatataacataatggtacacaagtg 34029294  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #5
Raw Score: 57; E-Value: 2e-23
Query Start/End: Original strand, 368 - 540
Target Start/End: Original strand, 44380254 - 44380424
Alignment:
Q  368 ccacttgtataccattaaggtattaatgttatataacattgaccaataaggagtgtgtcacgtatcaatgttattttataaatattttatttgatatatg 467  Q
    |||||||| |||||||||||||  |||| ||||||  |||||||||| |  |||||||||| ||||||| ||| |||||||||  |||||||||||||      
T  44380254 ccacttgtgtaccattaaggtaccaatggtatatactattgaccaattat-agtgtgtcacctatcaatattactttataaatgctttatttgatata-c 44380351  T
Q  468 ttttttaaagtgtgtgccacatgacacaccttaattggctaatgttatataacataatggtacgcaagtgtta 540  Q
    |||||||||| ||||||||| |||||||   |||||||  |||| |||||| ||| ||||||| |||||||||    
T  44380352 ttttttaaagggtgtgccacgtgacacattctaattggacaatggtatataccattatggtacacaagtgtta 44380424  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #6
Raw Score: 52; E-Value: 2e-20
Query Start/End: Original strand, 367 - 490
Target Start/End: Original strand, 47426349 - 47426470
Alignment:
Q  367 accacttgtataccattaaggtattaatgttatataacattgaccaataaggagtgtgtcacgtatcaatgttattttataaatattttatttgatatat 466  Q
    ||||||||| |||||||||||||  |||  |||||| ||||| ||||| || |||||||||| ||||||||||| |||||| ||  ||||||||||||||    
T  47426349 accacttgtgtaccattaaggtaccaatagtatataccattggccaattag-agtgtgtcacctatcaatgttactttatagatgctttatttgatatat 47426447  T
Q  467 gttttttaaagtgtgtgccacatg 490  Q
     |||||||||| ||||||||||||    
T  47426448 -ttttttaaagggtgtgccacatg 47426470  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #7
Raw Score: 39; E-Value: 0.000000000001
Query Start/End: Original strand, 363 - 417
Target Start/End: Complemental strand, 21963131 - 21963077
Alignment:
Q  363 ggacaccacttgtataccattaaggtattaatgttatataacattgaccaataag 417  Q
    ||||| ||||| | |||||||||||||| ||||||||||||||||||||||||||    
T  21963131 ggacatcacttatgtaccattaaggtatcaatgttatataacattgaccaataag 21963077  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #8
Raw Score: 38; E-Value: 0.000000000004
Query Start/End: Original strand, 419 - 495
Target Start/End: Complemental strand, 39498790 - 39498716
Alignment:
Q  419 agtgtgtcacgtatcaatgttattttataaatattttatttgatatatgttttttaaagtgtgtgccacatgacaca 495  Q
    |||||||||| |||| ||||||||||||||||||||||||| |||||   |||||||||  |||||||| |||||||    
T  39498790 agtgtgtcacctatcgatgttattttataaatattttatttaatata--atttttaaaggatgtgccacgtgacaca 39498716  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #9
Raw Score: 38; E-Value: 0.000000000004
Query Start/End: Original strand, 369 - 482
Target Start/End: Original strand, 50934501 - 50934613
Alignment:
Q  369 cacttgtataccattaaggtattaatgttatataacattgaccaataaggagtgtgtcacgtatcaatgttattttataaatattttatttgatatatgt 468  Q
    ||||||| |||||||||||||  |||| |||||| ||||| ||||| || |||||| ||| || |||||||| |||||||||   ||||||||||||| |    
T  50934501 cacttgtgtaccattaaggtaccaatggtatataccattggccaattag-agtgtgccacttaccaatgttactttataaatgcattatttgatatattt 50934599  T
Q  469 tttttaaagtgtgt 482  Q
    | ||||||| ||||    
T  50934600 tatttaaagggtgt 50934613  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #10
Raw Score: 36; E-Value: 0.00000000007
Query Start/End: Original strand, 372 - 495
Target Start/End: Original strand, 33509684 - 33509805
Alignment:
Q  372 ttgtataccattaaggtattaatgttatataacattgaccaataaggagtgtgtcacgtatcaatgttattttataaatattttatttgatatatgtttt 471  Q
    |||| ||||||||||||| ||||  |||||| ||||||||||| | ||||||| ||| || |||| ||| |||||| ||  |||||||||| ||| ||||    
T  33509684 ttgtgtaccattaaggtactaatagtatatatcattgaccaatta-gagtgtgccacctaccaatattactttatagatgctttatttgatgtat-tttt 33509781  T
Q  472 ttaaagtgtgtgccacatgacaca 495  Q
    ||||||  ||||||||||| ||||    
T  33509782 ttaaaggatgtgccacatggcaca 33509805  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #11
Raw Score: 35; E-Value: 0.0000000003
Query Start/End: Original strand, 433 - 495
Target Start/End: Original strand, 35094612 - 35094673
Alignment:
Q  433 caatgttattttataaatattttatttgatatatgttttttaaagtgtgtgccacatgacaca 495  Q
    |||||||| ||||||||||||||||||||||||| ||||||||||  |||| ||| |||||||    
T  35094612 caatgttactttataaatattttatttgatatat-ttttttaaaggatgtgtcacgtgacaca 35094673  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #12
Raw Score: 34; E-Value: 0.000000001
Query Start/End: Original strand, 434 - 487
Target Start/End: Original strand, 6023011 - 6023064
Alignment:
Q  434 aatgttattttataaatattttatttgatatatgttttttaaagtgtgtgccac 487  Q
    ||||||||||| ||| || |||||||||||||| |||||||||| |||||||||    
T  6023011 aatgttattttgtaagtactttatttgatatatattttttaaagggtgtgccac 6023064  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #13
Raw Score: 34; E-Value: 0.000000001
Query Start/End: Original strand, 418 - 487
Target Start/End: Original strand, 17466322 - 17466390
Alignment:
Q  418 gagtgtgtcacgtatcaatgttattttataaatattttatttgatatatgttttttaaagtgtgtgccac 487  Q
    ||||||||||| ||||||||||| |||||||||  |||| ||||||||| |||||||||| || ||||||    
T  17466322 gagtgtgtcacctatcaatgttactttataaatgatttagttgatatat-ttttttaaagggtatgccac 17466390  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #14
Raw Score: 33; E-Value: 0.000000004
Query Start/End: Original strand, 474 - 522
Target Start/End: Original strand, 25859019 - 25859067
Alignment:
Q  474 aaagtgtgtgccacatgacacaccttaattggctaatgttatataacat 522  Q
    |||| ||||||||||||||||||  |||||||| |||||||||||||||    
T  25859019 aaagggtgtgccacatgacacactctaattggccaatgttatataacat 25859067  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #15
Raw Score: 30; E-Value: 0.0000003
Query Start/End: Original strand, 363 - 408
Target Start/End: Complemental strand, 34955251 - 34955206
Alignment:
Q  363 ggacaccacttgtataccattaaggtattaatgttatataacattg 408  Q
    ||||||||||||| ||||||| || ||| |||||||||||||||||    
T  34955251 ggacaccacttgtctaccattgagatatcaatgttatataacattg 34955206  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4 (Bit Score: 119; Significance: 2e-60; HSPs: 12)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 119; E-Value: 2e-60
Query Start/End: Original strand, 363 - 537
Target Start/End: Original strand, 52012773 - 52012946
Alignment:
Q  363 ggacaccacttgtataccattaaggtattaatgttatataacattgaccaataaggagtgtgtcacgtatcaatgttattttataaatattttatttgat 462  Q
    ||||||||||||| |||||||||||||  |||||||||||||||||||||||||  |||||| ||| || |||||||| ||||||||| |||||||||||    
T  52012773 ggacaccacttgtgtaccattaaggtaccaatgttatataacattgaccaataaa-agtgtgccacataccaatgttactttataaatgttttatttgat 52012871  T
Q  463 atatgttttttaaagtgtgtgccacatgacacaccttaattggctaatgttatataacataatggtacgcaagtg 537  Q
    |||||||||||||||||||||||||||| |||||||||||| |||||||||||||||||||||||||| ||||||    
T  52012872 atatgttttttaaagtgtgtgccacatgtcacaccttaattagctaatgttatataacataatggtacacaagtg 52012946  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #2
Raw Score: 107; E-Value: 3e-53
Query Start/End: Original strand, 367 - 537
Target Start/End: Complemental strand, 9799535 - 9799366
Alignment:
Q  367 accacttgtataccattaaggtattaatgttatataacattgaccaataaggagtgtgtcacgtatcaatgttattttataaatattttatttgatatat 466  Q
    |||||||||||||||||||||||  |||||||||||||||||||||| ||| | |||| ||| || |||||||| ||||||||| |||||||| ||||||    
T  9799535 accacttgtataccattaaggtaccaatgttatataacattgaccaacaagaa-tgtgccacataccaatgttactttataaatgttttatttaatatat 9799437  T
Q  467 gttttttaaagtgtgtgccacatgacacaccttaattggctaatgttatataacataatggtacgcaagtg 537  Q
    ||||||||||||||||| |||||| |||||||||||| |||||||||||||||||||||||||| ||||||    
T  9799436 gttttttaaagtgtgtgtcacatgtcacaccttaattagctaatgttatataacataatggtacacaagtg 9799366  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #3
Raw Score: 75; E-Value: 4e-34
Query Start/End: Original strand, 363 - 512
Target Start/End: Original strand, 47943153 - 47943302
Alignment:
Q  363 ggacaccacttgtataccattaaggtattaatgttatataacatt-gaccaataaggagtgtgtcacgtatcaatgttattttataaatattttatttga 461  Q
    ||||||||||||| |||||||||  ||  |||||||||||| ||| |||||||||  | |||| ||| || |||| ||||||||||||||||||||||||    
T  47943153 ggacaccacttgtgtaccattaaaataccaatgttatataatatttgaccaataaaaa-tgtgccacataccaatattattttataaatattttatttga 47943251  T
Q  462 tatatgttttttaaagtgtgtgccacatgacacaccttaattggctaatgt 512  Q
    ||||||||||||||| ||||||||||||| |||||||||||| ||||||||    
T  47943252 tatatgttttttaaaatgtgtgccacatgtcacaccttaattagctaatgt 47943302  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #4
Raw Score: 68; E-Value: 6e-30
Query Start/End: Original strand, 368 - 527
Target Start/End: Original strand, 21260794 - 21260951
Alignment:
Q  368 ccacttgtataccattaaggtattaatgttatataacattgaccaataaggagtgtgtcacgtatcaatgttattttataaatattttatttgatatatg 467  Q
    |||||| |||||||||||||||  |||| |||||| ||||| ||||| || |||||||||| || |||||||| ||||||||| |||||||||||||||     
T  21260794 ccacttatataccattaaggtaccaatgatatatatcattggccaattag-agtgtgtcacctaccaatgttactttataaatgttttatttgatatat- 21260891  T
Q  468 ttttttaaagtgtgtgccacatgacacaccttaattggctaatgttatataacataatgg 527  Q
    |||||||||| |||||||||||| ||||   ||||||| |||||||||||| ||| ||||    
T  21260892 ttttttaaagggtgtgccacatggcacattctaattgggtaatgttatataccattatgg 21260951  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #5
Raw Score: 65; E-Value: 3e-28
Query Start/End: Original strand, 454 - 529
Target Start/End: Original strand, 46720200 - 46720276
Alignment:
Q  454 ttatttgatatatgtttt-ttaaagtgtgtgccacatgacacaccttaattggctaatgttatataacataatggta 529  Q
    |||||||||||||||||| ||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||    
T  46720200 ttatttgatatatgtttttttaaagtgtgtgccacatgacacaccttaattgactaatgttatataacataatggta 46720276  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #6
Raw Score: 60; E-Value: 3e-25
Query Start/End: Original strand, 368 - 495
Target Start/End: Original strand, 22343337 - 22343462
Alignment:
Q  368 ccacttgtataccattaaggtattaatgttatataacattgaccaataaggagtgtgtcacgtatcaatgttattttataaatattttatttgatatatg 467  Q
    |||||||| |||||||||||||| |||| |||||| ||||||||||| | ||||||||||  ||||||||||| |||||||||  ||||||||||||||     
T  22343337 ccacttgtgtaccattaaggtatcaatggtatatatcattgaccaatta-gagtgtgtcatctatcaatgttactttataaatgctttatttgatatat- 22343434  T
Q  468 ttttttaaagtgtgtgccacatgacaca 495  Q
    | ||||||||  ||||||||||||||||    
T  22343435 tattttaaaggatgtgccacatgacaca 22343462  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #7
Raw Score: 56; E-Value: 8e-23
Query Start/End: Original strand, 362 - 537
Target Start/End: Original strand, 12473698 - 12473871
Alignment:
Q  362 cggacaccacttgtataccattaaggtattaatgttatataacattgaccaataaggagtgtgtcacgtatcaatgttattttataaatattttatttga 461  Q
    |||| |||||||||||||||||||||||  |||| |||||| ||||| ||||| | ||||||| ||| || |||||||| |||||| ||  |||||||||    
T  12473698 cggataccacttgtataccattaaggtaccaatggtatataccattggccaatta-gagtgtgccacctaccaatgttactttatagatgctttatttga 12473796  T
Q  462 tatatgttttttaaagtgtgtgccacatgacacaccttaattggctaatgttatataacataatggtacgcaagtg 537  Q
    ||||| |||||||||| ||||| |||||||||||   ||||||   |||| |||||| ||| ||||||| ||||||    
T  12473797 tatat-ttttttaaagggtgtggcacatgacacattctaattgagcaatggtatataccattatggtacacaagtg 12473871  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #8
Raw Score: 56; E-Value: 8e-23
Query Start/End: Original strand, 362 - 537
Target Start/End: Original strand, 12528107 - 12528280
Alignment:
Q  362 cggacaccacttgtataccattaaggtattaatgttatataacattgaccaataaggagtgtgtcacgtatcaatgttattttataaatattttatttga 461  Q
    |||| |||||||||||||||||||||||  |||| |||||| ||||| ||||| | ||||||| ||| || |||||||| |||||| ||  |||||||||    
T  12528107 cggataccacttgtataccattaaggtaccaatggtatataccattggccaatta-gagtgtgccacctaccaatgttactttatagatgctttatttga 12528205  T
Q  462 tatatgttttttaaagtgtgtgccacatgacacaccttaattggctaatgttatataacataatggtacgcaagtg 537  Q
    ||||| |||||||||| ||||| |||||||||||   ||||||   |||| |||||| ||| ||||||| ||||||    
T  12528206 tatat-ttttttaaagggtgtggcacatgacacattctaattgagcaatggtatataccattatggtacacaagtg 12528280  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #9
Raw Score: 47; E-Value: 2e-17
Query Start/End: Original strand, 369 - 495
Target Start/End: Complemental strand, 33249544 - 33249420
Alignment:
Q  369 cacttgtataccattaaggtattaatgttatataacattgaccaataaggagtgtgtcacgtatcaatgttattttataaatattttatttgatatatgt 468  Q
    ||||||| |||||||||||||  |||| ||||||  |||| ||||| || |||||||||| || |||||||| |||||||||  ||||||||||||||      
T  33249544 cacttgtgtaccattaaggtacaaatggtatatacaattggccaattag-agtgtgtcacctaccaatgttactttataaatgctttatttgatatat-a 33249447  T
Q  469 tttttaaagtgtgtgccacatgacaca 495  Q
    ||||||||| |||||||||||| ||||    
T  33249446 tttttaaagggtgtgccacatggcaca 33249420  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #10
Raw Score: 44; E-Value: 0.000000000000001
Query Start/End: Original strand, 368 - 495
Target Start/End: Complemental strand, 35869742 - 35869617
Alignment:
Q  368 ccacttgtataccattaaggtattaatgttatataacattgaccaataaggagtgtgtcacgtatcaatgttattttataaatattttatttgatatatg 467  Q
    |||||||| |||||||||||||  |||| |||||| ||||||||||| |  | |||| ||| || |||||||| | ||||||| ||||||||||||||      
T  35869742 ccacttgtgtaccattaaggtaccaatggtatataccattgaccaatta-taatgtgccacctaccaatgttactatataaatgttttatttgatata-c 35869645  T
Q  468 ttttttaaagtgtgtgccacatgacaca 495  Q
    |||||||||| ||||||||| |||||||    
T  35869644 ttttttaaagggtgtgccacgtgacaca 35869617  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #11
Raw Score: 39; E-Value: 0.000000000001
Query Start/End: Original strand, 392 - 462
Target Start/End: Original strand, 46719954 - 46720023
Alignment:
Q  392 aatgttatataacattgaccaataaggagtgtgtcacgtatcaatgttattttataaatattttatttgat 462  Q
    ||||||||||||||||||||||||| ||||||| ||| ||  ||||||| |||||||||| ||||||||||    
T  46719954 aatgttatataacattgaccaataa-gagtgtgccacatacaaatgttactttataaatactttatttgat 46720023  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #12
Raw Score: 34; E-Value: 0.000000001
Query Start/End: Original strand, 369 - 466
Target Start/End: Complemental strand, 49999758 - 49999662
Alignment:
Q  369 cacttgtataccattaaggtattaatgttatataacattgaccaataaggagtgtgtcacgtatcaatgttattttataaatattttatttgatatat 466  Q
    ||||||| |||||| ||| || ||||||||| |  |||||  |||| || |||||||||| || ||||||||||||||||||  ||||||||||||||    
T  49999758 cacttgtgtaccatcaagatactaatgttatgtgtcattggtcaattag-agtgtgtcacataccaatgttattttataaatgctttatttgatatat 49999662  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8 (Bit Score: 85; Significance: 4e-40; HSPs: 8)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 85; E-Value: 4e-40
Query Start/End: Original strand, 361 - 517
Target Start/End: Original strand, 1514796 - 1514951
Alignment:
Q  361 acggacaccacttgtataccattaaggtattaatgttatataacattgaccaataaggagtgtgtcacgtatcaatgttattttataaatattttatttg 460  Q
    ||||||||||||||| |||||||||||||  |||||||||||||||||| ||||||| |||||  ||| || |||||||| ||||||||| |||||||||    
T  1514796 acggacaccacttgtgtaccattaaggtaccaatgttatataacattgatcaataag-agtgtaccacataccaatgttactttataaatgttttatttg 1514894  T
Q  461 atatatgttttttaaagtgtgtgccacatgacacaccttaattggctaatgttatat 517  Q
    |||||| ||||||||| ||||| ||| ||| |||||||||||||| |||||||||||    
T  1514895 atatatattttttaaaatgtgtaccatatgtcacaccttaattggttaatgttatat 1514951  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #2
Raw Score: 58; E-Value: 5e-24
Query Start/End: Original strand, 369 - 522
Target Start/End: Complemental strand, 32826005 - 32825854
Alignment:
Q  369 cacttgtataccattaaggtattaatgttatataacattgaccaataaggagtgtgtcacgtatcaatgttattttataaatattttatttgatatatgt 468  Q
    ||||||| ||||||||| |||| |||||| |||| ||||| ||||| || ||| |||||| ||||||||||||||||||  | ||||||||||||||| |    
T  32826005 cacttgtgtaccattaaagtatcaatgttgtataccattggccaattag-agtatgtcacatatcaatgttattttatatgtgttttatttgatatat-t 32825908  T
Q  469 tttttaaagtgtgtgccacatgacacaccttaattggctaatgttatataacat 522  Q
    |||| ||||  |||| ||||||||||| |||||||||| |||  ||||||||||    
T  32825907 ttttaaaaggttgtgtcacatgacacatcttaattggccaattatatataacat 32825854  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #3
Raw Score: 46; E-Value: 7e-17
Query Start/End: Original strand, 368 - 537
Target Start/End: Complemental strand, 41179734 - 41179567
Alignment:
Q  368 ccacttgtataccattaaggtattaatgttatataacattgaccaataaggagtgtgtcacgtatcaatgttattttataaatattttatttgatatatg 467  Q
    |||||||| |||||||||||||  |||| |||||| ||||| ||||| |  |||||||||| || | |||||| ||||||||| |||||||| ||||||     
T  41179734 ccacttgtgtaccattaaggtaccaatgatatatatcattggccaatta-aagtgtgtcacctaccgatgttactttataaatgttttatttaatatat- 41179637  T
Q  468 ttttttaaagtgtgtgccacatgacacaccttaattggctaatgttatataacataatggtacgcaagtg 537  Q
    |||||||| |  ||||||||||| ||||   |||||||  |||| |||||| ||| ||||||| ||||||    
T  41179636 ttttttaatggatgtgccacatggcacattctaattgggcaatggtatataccattatggtacacaagtg 41179567  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #4
Raw Score: 43; E-Value: 0.000000000000005
Query Start/End: Original strand, 377 - 495
Target Start/End: Original strand, 18168394 - 18168511
Alignment:
Q  377 taccattaaggtattaatgttatataacattgaccaataaggagtgtgtcacgtatcaatgttattttataaatattttatttgatatatgttttttaaa 476  Q
    |||||||||||||  |||| |||||| |||||| |||| || |||||  ||| || |||| ||| |||||||||| |||||||||||||| |||||||||    
T  18168394 taccattaaggtaccaatggtatatatcattgatcaattag-agtgtcccacctaccaatcttactttataaatactttatttgatatattttttttaaa 18168492  T
Q  477 gtgtgtgccacatgacaca 495  Q
    |  |||||||| |||||||    
T  18168493 ggatgtgccacgtgacaca 18168511  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #5
Raw Score: 43; E-Value: 0.000000000000005
Query Start/End: Original strand, 377 - 495
Target Start/End: Original strand, 18631951 - 18632068
Alignment:
Q  377 taccattaaggtattaatgttatataacattgaccaataaggagtgtgtcacgtatcaatgttattttataaatattttatttgatatatgttttttaaa 476  Q
    |||||||||||||  |||| |||||| |||||| |||| || |||||  ||| || |||| ||| |||||||||| |||||||||||||| |||||||||    
T  18631951 taccattaaggtaccaatggtatatatcattgatcaattag-agtgtcccacctaccaatcttactttataaatactttatttgatatattttttttaaa 18632049  T
Q  477 gtgtgtgccacatgacaca 495  Q
    |  |||||||| |||||||    
T  18632050 ggatgtgccacgtgacaca 18632068  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #6
Raw Score: 37; E-Value: 0.00000000002
Query Start/End: Original strand, 419 - 487
Target Start/End: Complemental strand, 4708428 - 4708361
Alignment:
Q  419 agtgtgtcacgtatcaatgttattttataaatattttatttgatatatgttttttaaagtgtgtgccac 487  Q
    |||||||||| || |||||||| ||||||||| |||||||||||||||  ||||||||| |||||||||    
T  4708428 agtgtgtcacctaccaatgttactttataaatgttttatttgatatat-atttttaaagggtgtgccac 4708361  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #7
Raw Score: 31; E-Value: 0.00000007
Query Start/End: Original strand, 433 - 495
Target Start/End: Complemental strand, 11254135 - 11254074
Alignment:
Q  433 caatgttattttataaatattttatttgatatatgttttttaaagtgtgtgccacatgacaca 495  Q
    |||||||| ||||||||| ||||||||||||||   ||||||||| ||||||||| |||||||    
T  11254135 caatgttactttataaatgttttatttgatata-catttttaaagggtgtgccacgtgacaca 11254074  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #8
Raw Score: 31; E-Value: 0.00000007
Query Start/End: Original strand, 367 - 537
Target Start/End: Complemental strand, 24338002 - 24337834
Alignment:
Q  367 accacttgtataccattaaggtattaatgttatataacattgaccaataaggagtgtgtcacgtatcaatgttattttataaatattttatttgatatat 466  Q
    ||||||||| ||| |||||||||  |||| |||||| ||| |  |||| || |||||| ||  || |||||||| |||||| ||  ||||||||||||||    
T  24338002 accacttgtgtactattaaggtagcaatggtatataccatcggtcaattag-agtgtgccatctaccaatgttactttatagatgctttatttgatatat 24337904  T
Q  467 gttttttaaagtgtgtgccacatgacacaccttaattggctaatgttatataacataatggtacgcaagtg 537  Q
     ||||| |||| |||||||||||  ||||   |||||||  |||| |||||| ||| ||||||| ||||||    
T  24337903 attttt-aaagggtgtgccacatagcacattctaattggacaatggtatataccattatggtacacaagtg 24337834  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2 (Bit Score: 69; Significance: 1e-30; HSPs: 9)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 69; E-Value: 1e-30
Query Start/End: Original strand, 392 - 528
Target Start/End: Original strand, 10163506 - 10163641
Alignment:
Q  392 aatgttatataacattgaccaataaggagtgtgtcacgtatcaatgttattttataaatattttatttgatatatgttttttaaagtgtgtgccacatga 491  Q
    |||||||||||||||||||||||||  | |||| ||| ||   || ||| |||||||||| |||||||||||||||||||||||||| ||||| |||||     
T  10163506 aatgttatataacattgaccaataaaaa-tgtgccacatactgatattactttataaataatttatttgatatatgttttttaaagtatgtgctacatgg 10163604  T
Q  492 cacaccttaattggctaatgttatataacataatggt 528  Q
    || |||||||||| |||||||||||||||||||||||    
T  10163605 cataccttaattgactaatgttatataacataatggt 10163641  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #2
Raw Score: 57; E-Value: 2e-23
Query Start/End: Original strand, 453 - 537
Target Start/End: Complemental strand, 3668097 - 3668013
Alignment:
Q  453 tttatttgatatatgttttttaaagtgtgtgccacatgacacaccttaattggctaatgttatataacataatggtacgcaagtg 537  Q
    ||||||| ||||||||||||||||||| |||||||||| |||| |||||||||||||| |||||||| |||||||||| ||||||    
T  3668097 tttattttatatatgttttttaaagtgagtgccacatggcacatcttaattggctaatattatataatataatggtacacaagtg 3668013  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #3
Raw Score: 50; E-Value: 3e-19
Query Start/End: Original strand, 368 - 537
Target Start/End: Complemental strand, 34392252 - 34392085
Alignment:
Q  368 ccacttgtataccattaaggtattaatgttatataacattgaccaataaggagtgtgtcacgtatcaatgttattttataaatattttatttgatatatg 467  Q
    |||||||| ||||||| |||||  |||| |||||| ||||| ||||| || |||||| ||| || |||| ||| |||||||||  ||||||||||||||     
T  34392252 ccacttgtgtaccattgaggtaccaatggtatataccattggccaattag-agtgtgccacctaccaatcttactttataaatgctttatttgatatat- 34392155  T
Q  468 ttttttaaagtgtgtgccacatgacacaccttaattggctaatgttatataacataatggtacgcaagtg 537  Q
    |||||||||| |||||||||||| ||||   |||||||  |||| |||||| ||| ||||||| ||||||    
T  34392154 ttttttaaagggtgtgccacatggcacaatctaattggacaatggtatataccattatggtacacaagtg 34392085  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #4
Raw Score: 42; E-Value: 0.00000000000002
Query Start/End: Original strand, 368 - 465
Target Start/End: Original strand, 21603959 - 21604055
Alignment:
Q  368 ccacttgtataccattaaggtattaatgttatataacattgaccaataaggagtgtgtcacgtatcaatgttattttataaatattttatttgatata 465  Q
    |||||||| |||||||||||||  |||| |||||| ||||||||||| |  ||||| |||| || |||||||| ||||||||| ||||||||||||||    
T  21603959 ccacttgtgtaccattaaggtaccaatggtatataccattgaccaatta-tagtgtatcacctaccaatgttactttataaatgttttatttgatata 21604055  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #5
Raw Score: 38; E-Value: 0.000000000004
Query Start/End: Original strand, 368 - 473
Target Start/End: Complemental strand, 37358092 - 37357988
Alignment:
Q  368 ccacttgtataccattaaggtattaatgttatataacattgaccaataaggagtgtgtcacgtatcaatgttattttataaatattttatttgatatatg 467  Q
    |||||||| || ||||||||||  |||| |||||| ||||||| ||| || |||||||||| ||||||||||| |||||||||  ||||||| |||| |     
T  37358092 ccacttgtgtatcattaaggtaccaatgatatataccattgactaattag-agtgtgtcacctatcaatgttactttataaatgctttatttaatatttt 37357994  T
Q  468 tttttt 473  Q
    ||||||    
T  37357993 tttttt 37357988  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #6
Raw Score: 37; E-Value: 0.00000000002
Query Start/End: Original strand, 418 - 530
Target Start/End: Complemental strand, 23863925 - 23863814
Alignment:
Q  418 gagtgtgtcacgtatcaatgttattttataaatattttatttgatatatgttttttaaagtgtgtgccacatgacacaccttaattggctaatgttatat 517  Q
    ||||||| ||| || |||||||| |||||||||  ||||||||||||||  ||||||||| |||||||||||| ||||   |||||||  |||| |||||    
T  23863925 gagtgtgccacctaccaatgttactttataaatgctttatttgatatat-atttttaaagggtgtgccacatggcacattctaattggacaatgatatat 23863827  T
Q  518 aacataatggtac 530  Q
    | ||| |||||||    
T  23863826 atcattatggtac 23863814  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #7
Raw Score: 36; E-Value: 0.00000000007
Query Start/End: Original strand, 433 - 540
Target Start/End: Original strand, 4779649 - 4779755
Alignment:
Q  433 caatgttattttataaatattttatttgatatatgttttttaaagtgtgtgccacatgacacaccttaattggctaatgttatataacataatggtacgc 532  Q
    |||||||| |||||||||| |||||||||||||| ||||||||||  |||| ||| |||||||   |||||||  |||| |||||| ||| ||| ||| |    
T  4779649 caatgttactttataaatactttatttgatatat-ttttttaaaggatgtgtcacgtgacacattctaattggacaatggtatataccattatgatacac 4779747  T
Q  533 aagtgtta 540  Q
    ||||||||    
T  4779748 aagtgtta 4779755  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #8
Raw Score: 34; E-Value: 0.000000001
Query Start/End: Original strand, 433 - 530
Target Start/End: Complemental strand, 41095893 - 41095797
Alignment:
Q  433 caatgttattttataaatattttatttgatatatgttttttaaagtgtgtgccacatgacacaccttaattggctaatgttatataacataatggtac 530  Q
    |||||||| |||||||||  ||||||||||| || |||||||||  || ||||||||| |||||| ||| |||| |||| |||||| ||| |||||||    
T  41095893 caatgttactttataaatgctttatttgatagat-ttttttaaaaggtatgccacatggcacaccctaaatggccaatggtatataccattatggtac 41095797  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #9
Raw Score: 31; E-Value: 0.00000007
Query Start/End: Original strand, 371 - 536
Target Start/End: Original strand, 7381695 - 7381857
Alignment:
Q  371 cttgtataccattaaggtattaatgttatataacattgaccaataaggagtgtgtcacgtatcaatgttattttataaatattttatttgatatatgttt 470  Q
    ||||| |||||||||||||  |||| ||||||  |||| ||||| || |||||| ||  || |||||||| |||||||||  |||||||||||||  |||    
T  7381695 cttgtgtaccattaaggtaccaatggtatatactattggccaattag-agtgtgccatctaccaatgttactttataaattctttatttgatata--ttt 7381791  T
Q  471 tttaaagtgtgtgccacatgacacaccttaattggctaatgttatataacataatggtacgcaagt 536  Q
    |||||||  |||| ||  |||||||  ||||||||  |||  |||||| ||| || ||||||||||    
T  7381792 tttaaaggatgtgtcatgtgacacattttaattgggcaatagtatataccattatagtacgcaagt 7381857  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7 (Bit Score: 54; Significance: 1e-21; HSPs: 7)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 54; E-Value: 1e-21
Query Start/End: Original strand, 368 - 529
Target Start/End: Original strand, 35341536 - 35341695
Alignment:
Q  368 ccacttgtataccattaaggtattaatgttatataacattgaccaataaggagtgtgtcacgtatcaatgttattttataaatattttatttgatatatg 467  Q
    |||||||| |||||||||||||  |||| |||||| ||||||||||| |  |||||| ||| || |||||||| ||||||||| ||||||||||||||      
T  35341536 ccacttgtgtaccattaaggtaccaatgatatataccattgaccaatta-tagtgtgccacctaccaatgttactttataaatgttttatttgatata-c 35341633  T
Q  468 ttttttaaagtgtgtgccacatgacacaccttaattggctaatgttatataacataatggta 529  Q
    |||||||||| ||||||||| |||||||   |||||||  |||| |||||| ||| ||||||    
T  35341634 ttttttaaagggtgtgccacgtgacacattctaattggacaatgatatatatcattatggta 35341695  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #2
Raw Score: 48; E-Value: 5e-18
Query Start/End: Original strand, 418 - 537
Target Start/End: Original strand, 48072436 - 48072554
Alignment:
Q  418 gagtgtgtcacgtatcaatgttattttataaatattttatttgatatatgttttttaaagtgtgtgccacatgacacaccttaattggctaatgttatat 517  Q
    ||||||| ||| | ||||||||||||||||||||||||||||||| ||| |||||||||| ||||||||| || ||||   |||||||  |||| |||||    
T  48072436 gagtgtgccacatttcaatgttattttataaatattttatttgatgtat-ttttttaaagggtgtgccacgtggcacattctaattgggcaatggtatat 48072534  T
Q  518 aacataatggtacgcaagtg 537  Q
    | ||| ||||||| ||||||    
T  48072535 accattatggtacacaagtg 48072554  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #3
Raw Score: 43; E-Value: 0.000000000000005
Query Start/End: Original strand, 421 - 495
Target Start/End: Original strand, 23178475 - 23178549
Alignment:
Q  421 tgtgtcacgtatcaatgttattttataaatattttatttgatatatgttttttaaagtgtgtgccacatgacaca 495  Q
    |||||||| ||||||||||||||||||||| ||||||| ||||||  |||||||||  || ||||||||||||||    
T  23178475 tgtgtcacatatcaatgttattttataaatgttttattcgatatacattttttaaatggtatgccacatgacaca 23178549  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #4
Raw Score: 38; E-Value: 0.000000000004
Query Start/End: Original strand, 430 - 495
Target Start/End: Complemental strand, 32694680 - 32694616
Alignment:
Q  430 tatcaatgttattttataaatattttatttgatatatgttttttaaagtgtgtgccacatgacaca 495  Q
    ||||||||||| |||||||||  |||||||||||||| |||||||||| ||||||||| |||||||    
T  32694680 tatcaatgttactttataaattctttatttgatatat-ttttttaaagggtgtgccacgtgacaca 32694616  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #5
Raw Score: 33; E-Value: 0.000000004
Query Start/End: Original strand, 367 - 466
Target Start/End: Complemental strand, 40893214 - 40893115
Alignment:
Q  367 accacttgtataccattaaggtattaatgttatataacattgaccaataaggagtgtgtcacgtatcaatgttattttataaat-attttatttgatata 465  Q
    |||||||||||||||| || ||||||||| |||||| |||||  |||| | || ||| |||  ||||||||||| |||||||||  ||||||||||||||    
T  40893214 accacttgtataccatcaaagtattaatggtatataccattggtcaatta-gaatgtctcatctatcaatgttactttataaatgcttttatttgatata 40893116  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #6
Raw Score: 32; E-Value: 0.00000002
Query Start/End: Original strand, 367 - 490
Target Start/End: Original strand, 48250153 - 48250274
Alignment:
Q  367 accacttgtataccattaaggtattaatgttatataacattgaccaataaggagtgtgtcacgtatcaatgttattttataaatattttatttgatatat 466  Q
    ||||||||| |||||||||||||  |||| |||||| |||||  |||| | ||||||| ||| || |||||||| |||||| ||  |||||||||||| |    
T  48250153 accacttgtgtaccattaaggtaccaatgatatatatcattggtcaatta-gagtgtgccacctaccaatgttactttatagatgctttatttgatat-t 48250250  T
Q  467 gttttttaaagtgtgtgccacatg 490  Q
     |||||||||| || ||| |||||    
T  48250251 tttttttaaagggtatgctacatg 48250274  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #7
Raw Score: 31; E-Value: 0.00000007
Query Start/End: Original strand, 418 - 472
Target Start/End: Original strand, 40856480 - 40856534
Alignment:
Q  418 gagtgtgtcacgtatcaatgttattttataaatattttatttgatatatgttttt 472  Q
    ||||||||||| || ||||||||||||||| || ||||||||||| ||| |||||    
T  40856480 gagtgtgtcacctaccaatgttattttatagatgttttatttgatgtattttttt 40856534  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0032 (Bit Score: 52; Significance: 2e-20; HSPs: 1)
Name: scaffold0032
Description:

Target: scaffold0032; HSP #1
Raw Score: 52; E-Value: 2e-20
Query Start/End: Original strand, 368 - 518
Target Start/End: Original strand, 34194 - 34341
Alignment:
Q  368 ccacttgtataccattaaggtattaatgttatataacattgaccaataaggagtgtgtcacgtatcaatgttattttataaatattttatttgatatatg 467  Q
    |||||||| |||||||||||||  |||| ||||||  |||| ||||| || |||||| ||| || |||| ||| ||||||||||||||||||||||||      
T  34194 ccacttgtgtaccattaaggtaccaatggtatatattattggccaattag-agtgtgccacttaccaatattactttataaatattttatttgatata-- 34290  T
Q  468 ttttttaaagtgtgtgccacatgacacaccttaattggctaatgttatata 518  Q
    |||||||||| ||||| ||| |||||||   ||||||| ||||||||||||    
T  34291 ttttttaaagggtgtgtcacgtgacacattctaattggataatgttatata 34341  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0041 (Bit Score: 33; Significance: 0.000000004; HSPs: 1)
Name: scaffold0041
Description:

Target: scaffold0041; HSP #1
Raw Score: 33; E-Value: 0.000000004
Query Start/End: Original strand, 367 - 466
Target Start/End: Original strand, 73070 - 73169
Alignment:
Q  367 accacttgtataccattaaggtattaatgttatataacattgaccaataaggagtgtgtcacgtatcaatgttattttataaat-attttatttgatata 465  Q
    |||||||||||||||| || ||||||||| |||||| |||||  |||| | || ||| |||  ||||||||||| |||||||||  ||||||||||||||    
T  73070 accacttgtataccatcaaagtattaatggtatataccattggtcaatta-gaatgtctcatctatcaatgttactttataaatgcttttatttgatata 73168  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0519 (Bit Score: 31; Significance: 0.00000007; HSPs: 1)
Name: scaffold0519
Description:

Target: scaffold0519; HSP #1
Raw Score: 31; E-Value: 0.00000007
Query Start/End: Original strand, 433 - 495
Target Start/End: Original strand, 11258 - 11319
Alignment:
Q  433 caatgttattttataaatattttatttgatatatgttttttaaagtgtgtgccacatgacaca 495  Q
    |||||||| ||||||||| ||||||||||||||   ||||||||| ||||||||| |||||||    
T  11258 caatgttactttataaatgttttatttgatata-catttttaaagggtgtgccacgtgacaca 11319  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0263 (Bit Score: 30; Significance: 0.0000003; HSPs: 1)
Name: scaffold0263
Description:

Target: scaffold0263; HSP #1
Raw Score: 30; E-Value: 0.0000003
Query Start/End: Original strand, 418 - 471
Target Start/End: Complemental strand, 23221 - 23168
Alignment:
Q  418 gagtgtgtcacgtatcaatgttattttataaatattttatttgatatatgtttt 471  Q
    ||||||| ||| || |||| ||| ||||||||||||||||||||||||| ||||    
T  23221 gagtgtgccacctaccaattttactttataaatattttatttgatatatttttt 23168  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]



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