View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF4094-2-Insertion-3 (Length: 624)
Name: NF4094-2-Insertion-3
Description: NF4094-2
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF4094-2-Insertion-3 |
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| [»] chr8 (1 HSPs) |
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| [»] scaffold0009 (1 HSPs) |
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Alignment Details
Target: chr8 (Bit Score: 597; Significance: 0; HSPs: 1)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 597; E-Value: 0
Query Start/End: Original strand, 7 - 624
Target Start/End: Original strand, 3402767 - 3403384
Alignment:
| Q |
7 |
acaacaaaatcatataagagaacaaaaatgctacttagagcgaaaaagaagttcacgatgatatcatggctatgcaactaacttaagcccgtatttattc |
106 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
3402767 |
acaacaaaatcatataagagaacaaaaatgctacttagagcgaaaaagaagttcacgatgatatcatggctatgcaactaacttaagcccgtatttattc |
3402866 |
T |
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| Q |
107 |
caccaaagaaaagatctgacagttgttgtaatttcgtgatcaattcgcgatagtgttgttcgctataaacagcaatactcgattacgaaaatgctactta |
206 |
Q |
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| T |
3402867 |
caccaaagaaaagatctgacagttgttgtaatttcgtgatcaattcgcgatagtgttgttcgctataaacagcaatactcgattacgaaaatgctactta |
3402966 |
T |
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| Q |
207 |
gagcgaaaaaggggtgcattagttttgaacacaaattgttgcatctgtaggaagggtaacatgtggcgagacctctattttaggccaatatttgaaaacc |
306 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
3402967 |
gagcgaaaaaggggtgcattagttttgaacacaaattgttgcatctgtaggaagggtaacatgtggcgagacctctattttaggccaatatttgaaaacc |
3403066 |
T |
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| Q |
307 |
taaagcgagattttggaccgttttatctttggaccgaccatgaacatcattattgatcaatacgatacatgggttctcaatactagttccacaatcgtct |
406 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
3403067 |
taaagcgagattttggaccgttttatctttggaccgaccatgaacatcattattgatcaatacgatacatgggttctcaatactagttccacaatcgtct |
3403166 |
T |
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| Q |
407 |
caactacaccattctcaaattgaagaataatccatctaaaaacatgaatgaaagaaaccatgtgagtttggtgtggggcgttggaagatgtctttgcagg |
506 |
Q |
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| T |
3403167 |
caactacaccattctcaaattgaagaataatccatctaaaaacatgaatgaaagaaaccatgtgagtttggtgtggggcgttggaagatgtctttgcagg |
3403266 |
T |
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| Q |
507 |
cacagatccaagttaagcaaattgggggcagttgaccccactaacattctaatttcttcatgagtttttgaataaatttaannnnnnncttaggcaaaat |
606 |
Q |
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| T |
3403267 |
cacagatccaagttaagcaaattgggggcagttgaccccactaacattctaatttcttcatgagtttttgaataaatttaatttttttcttaggcaaaat |
3403366 |
T |
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| Q |
607 |
taagtgttgcccccataa |
624 |
Q |
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| T |
3403367 |
taagtgttgcccccataa |
3403384 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5 (Bit Score: 45; Significance: 2e-16; HSPs: 2)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 45; E-Value: 2e-16
Query Start/End: Original strand, 103 - 231
Target Start/End: Complemental strand, 20829917 - 20829789
Alignment:
| Q |
103 |
attccaccaaagaaaagatctgacagttgttgtaatttcgtgatcaattcgcgatagtgttgttcgctataaacagcaatactcgattacgaaaatgcta |
202 |
Q |
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|||| |||||||||||||| ||| |||| |||||||||| |||||||| | ||||||||||||| ||||||||| ||| | | || || |||||||| |
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| T |
20829917 |
attcaaccaaagaaaagatatgatggttgctgtaatttcgcgatcaatttgtgatagtgttgttccctataaacaacaacattagacaacaaaaatgctg |
20829818 |
T |
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| Q |
203 |
cttagagcgaaaaaggggtgcattagttt |
231 |
Q |
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| T |
20829817 |
cttagagcgaaagtgaggtgcactagttt |
20829789 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #2
Raw Score: 33; E-Value: 0.000000004
Query Start/End: Original strand, 30 - 74
Target Start/End: Complemental strand, 20830015 - 20829971
Alignment:
| Q |
30 |
aaaaatgctacttagagcgaaaaagaagttcacgatgatatcatg |
74 |
Q |
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| T |
20830015 |
aaaaatgctacttagagtgaaaaagaagctcacaatgatatcatg |
20829971 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: scaffold0009 (Bit Score: 31; Significance: 0.00000006; HSPs: 1)
Name: scaffold0009
Description:
Target: scaffold0009; HSP #1
Raw Score: 31; E-Value: 0.00000006
Query Start/End: Original strand, 541 - 587
Target Start/End: Complemental strand, 203864 - 203818
Alignment:
| Q |
541 |
accccactaacattctaatttcttcatgagtttttgaataaatttaa |
587 |
Q |
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| T |
203864 |
accccactaacatttcaattttttcatgagttttttaataaatttaa |
203818 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3 (Bit Score: 29; Significance: 0.0000009; HSPs: 1)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 29; E-Value: 0.0000009
Query Start/End: Original strand, 505 - 587
Target Start/End: Complemental strand, 26773770 - 26773689
Alignment:
| Q |
505 |
ggcacagatccaagttaagcaaattgggggcagttgaccccact-aacattctaatttcttcatgagtttttgaataaatttaa |
587 |
Q |
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| T |
26773770 |
ggcacggatacaggttaagtaaattgggggta--tgaccccatttaacattctaatttctttatgagtttctgaatagatttaa |
26773689 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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