View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF4094-2-Insertion-4 (Length: 517)
Name: NF4094-2-Insertion-4
Description: NF4094-2
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF4094-2-Insertion-4 |
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| [»] chr6 (11 HSPs) |
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Alignment Details
Target: chr6 (Bit Score: 437; Significance: 0; HSPs: 11)
Name: chr6
Description:
Target: chr6; HSP #1
Raw Score: 437; E-Value: 0
Query Start/End: Original strand, 8 - 517
Target Start/End: Complemental strand, 32685420 - 32684916
Alignment:
| Q |
8 |
gataatagttatataggaattagtgcagaataaatacaatagttatataggaatcagtacataataaccagacacgcatagacaagatttgcgagcttgg |
107 |
Q |
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|||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
32685420 |
gataatagttatataggaattagtacagaataaatacaatagttatataggaatcagtacataataaccagacacgcatagacaagatttgcgagcttgg |
32685321 |
T |
|
| Q |
108 |
aacttcccaagtgtctatctaacactcacaacttaaggataaaacagaacatagttcagttttcctttcttaccctacacaactgcctaattttatttac |
207 |
Q |
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|||||||||||||||| | |||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||| |
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| T |
32685320 |
cacttcccaagtgtcta----aaactcacaacttaaggataaaacagaacatagttcagttttcctttcttactatacacaactgcctaattttatttac |
32685225 |
T |
|
| Q |
208 |
agccttcaacatcctttatttgaatttcggcttttggatttctttcatcttaagcttcattctcctgctggtttggaacttcagctgccttagatgtacc |
307 |
Q |
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|||||||||||||||||||||||| ||||||||||||| | |||||||||||||||||||||||||||||||||||||||| |||||||||||||||||| |
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| T |
32685224 |
agccttcaacatcctttatttgaacttcggcttttggaat-ctttcatcttaagcttcattctcctgctggtttggaacttgagctgccttagatgtacc |
32685126 |
T |
|
| Q |
308 |
ttcttcatttggaacttcagctgccttagatgcagctttttcatctatcttcttttgaacttgaactctcagtttcttaatttcaactgtaaccctttta |
407 |
Q |
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||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
32685125 |
ttcttcaattggaacttcagctgccttagatgcagctttttcatctatcttcttttgaacttgaactctcagtttcttaatttcaactgtaaccctttta |
32685026 |
T |
|
| Q |
408 |
aaatcagcttctttctgcttttcaagtttatccagggcagtccgcgctgcattcaacaactccaatccagctgctggtttacaggttaattaatattaaa |
507 |
Q |
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| T |
32685025 |
aaatcagcttctttctgcttttcaattttatccagggcagtccgcgctgcattcaacaactccaatccaactgctggtttataggttaattaatattaaa |
32684926 |
T |
|
| Q |
508 |
gaactcaaat |
517 |
Q |
| |
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|||||||||| |
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| T |
32684925 |
gaactcaaat |
32684916 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #2
Raw Score: 371; E-Value: 0
Query Start/End: Original strand, 46 - 517
Target Start/End: Complemental strand, 32683672 - 32683211
Alignment:
| Q |
46 |
atagttatataggaatcagtacataataaccagacacgcatagacaagatttgcgagcttggaacttcccaagtgtctatctaacactcacaacttaagg |
145 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||| | ||||||||||||||| |
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| T |
32683672 |
atagttatataggaatcagtacataataaccagacacgcatagacaagatttgcgagcttggcacttcccaagtgtcta----aaactcacaacttaagg |
32683577 |
T |
|
| Q |
146 |
ataaaacagaacatagttcagttttcctttcttaccctacacaactgcctaattttatttacagccttcaacatcctttatttgaatttcggcttttgga |
245 |
Q |
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||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||| |
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| T |
32683576 |
ataaaacagaacatagttcagttttcctttcttactctacacaactgcctaattttatttacagccttcaacatcctttatttgaacttcggcttttgga |
32683477 |
T |
|
| Q |
246 |
tttctttcatcttaagcttcattctcctgctggtttggaacttcagctgccttagatgtaccttcttcatttggaacttcagctgccttagatgcagctt |
345 |
Q |
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| |||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||| |||||||||||||||||||||||||||||| |
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| T |
32683476 |
at-ctttcatcttaagcttcattctcctgctggtttggaacttgagctgccttagatgtaccttcttcaattggaacttcagctgccttagatgcagctt |
32683378 |
T |
|
| Q |
346 |
tttcatctatcttcttttgaacttgaactctcagtttcttaatttcaactgtaacccttttaaaatcagcttctttctgcttttcaagtttatccagggc |
445 |
Q |
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||||||||||||||||||||||||||||||||||||||||||||||||||| | |||||||||||||||||||| |||||||||||| || ||||||||| |
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| T |
32683377 |
tttcatctatcttcttttgaacttgaactctcagtttcttaatttcaactgcagcccttttaaaatcagcttctctctgcttttcaatttcatccagggc |
32683278 |
T |
|
| Q |
446 |
agtccgcgctgcattcaacaactccaatccagctgctggtttacaggttaattaatattaaagaactcaaat |
517 |
Q |
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||| ||||||||||||||||||||||| ||||||||||| |||||||||||||||||||||||||||| |
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| T |
32683277 |
agtacgcgctgcattcaacaactccaa-----ctgctggtttataggttaattaatattaaagaactcaaat |
32683211 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #3
Raw Score: 82; E-Value: 2e-38
Query Start/End: Original strand, 315 - 517
Target Start/End: Original strand, 33010907 - 33011092
Alignment:
| Q |
315 |
tttggaacttcagctgccttagatgcagctttttcatctatcttcttttgaacttgaactctcagtttcttaatttcaactgtaacccttttaaaatcag |
414 |
Q |
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||||||||||||||||||||||||| ||||||||||||||||||||||||||| |||||||||||||||| | ||||||||||||||| |
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| T |
33010907 |
tttggaacttcagctgccttagatgtagctttttcatctatcttcttttgaac------------tttcttaatttcaacttcatcccttttaaaatcag |
33010994 |
T |
|
| Q |
415 |
cttctttctgcttttcaagtttatccagggcagtccgcgctgcattcaacaactccaatccagctgctggtttacaggttaattaatattaaagaactca |
514 |
Q |
| |
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||| ||||||||||||| || ||||| |||| || ||||||||||| ||||| ||| ||||||||||| ||||||||||||||||||||||||| |
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| T |
33010995 |
attccttctgcttttcaatttcatccaaggcattcagcgctgcattcgccaacttcaa-----ctgctggtttataggttaattaatattaaagaactca |
33011089 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #4
Raw Score: 79; E-Value: 1e-36
Query Start/End: Original strand, 63 - 231
Target Start/End: Original strand, 33010662 - 33010824
Alignment:
| Q |
63 |
agtacataataaccagacacgcatagac-aagatttgcgagcttggaacttcccaagtgtctatctaacactcacaacttaaggataaaacagaacatag |
161 |
Q |
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||||||||||||||| |||||||||||| ||||||||| ||||||| |||||||||| ||||||| |||||||| |||||||||| |||||||| |
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| T |
33010662 |
agtacataataaccaaacacgcatagaccaagatttgcaagcttggctcttcccaagtatctatct------cacaacttgaggataaaacggaacatag |
33010755 |
T |
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| Q |
162 |
ttcagttttcctttcttaccctacacaactgcctaattttatttacagccttcaacatcctttatttgaa |
231 |
Q |
| |
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|||| ||| | |||||||| | |||||||||| |||||||||||||| |||||||||||||||||||||| |
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| T |
33010756 |
ttcaatttccttttcttactccacacaactgcttaattttatttaca-ccttcaacatcctttatttgaa |
33010824 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #5
Raw Score: 54; E-Value: 9e-22
Query Start/End: Original strand, 242 - 315
Target Start/End: Original strand, 33010870 - 33010943
Alignment:
| Q |
242 |
tggatttctttcatcttaagcttcattctcctgctggtttggaacttcagctgccttagatgtaccttcttcat |
315 |
Q |
| |
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||||| |||||||||||||||||| | ||||||||||||||||||||||||||||||||||||| ||| ||||| |
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| T |
33010870 |
tggatgtctttcatcttaagcttcgtactcctgctggtttggaacttcagctgccttagatgtagctttttcat |
33010943 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #6
Raw Score: 43; E-Value: 0.000000000000003
Query Start/End: Original strand, 239 - 293
Target Start/End: Complemental strand, 33011259 - 33011205
Alignment:
| Q |
239 |
ttttggatttctttcatcttaagcttcattctcctgctggtttggaacttcagct |
293 |
Q |
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||||||||||||||| |||||| |||| ||||||||||||||||||||||||||| |
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| T |
33011259 |
ttttggatttctttcttcttaatcttcgttctcctgctggtttggaacttcagct |
33011205 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #7
Raw Score: 33; E-Value: 0.000000003
Query Start/End: Original strand, 239 - 291
Target Start/End: Complemental strand, 28734811 - 28734759
Alignment:
| Q |
239 |
ttttggatttctttcatcttaagcttcattctcctgctggtttggaacttcag |
291 |
Q |
| |
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|||||||| | ||||||| ||||||||| ||| |||||||||||||||||||| |
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|
| T |
28734811 |
ttttggatgtttttcatcataagcttcaatcttctgctggtttggaacttcag |
28734759 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #8
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 478 - 517
Target Start/End: Complemental strand, 28711125 - 28711086
Alignment:
| Q |
478 |
ctgctggtttacaggttaattaatattaaagaactcaaat |
517 |
Q |
| |
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|||| |||||| |||||||||||||||||||||||||||| |
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| T |
28711125 |
ctgcaggtttagaggttaattaatattaaagaactcaaat |
28711086 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #9
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 250 - 297
Target Start/End: Complemental strand, 28711423 - 28711376
Alignment:
| Q |
250 |
tttcatcttaagcttcattctcctgctggtttggaacttcagctgcct |
297 |
Q |
| |
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|||||| |||||||||| ||||||| |||||||||||||||| ||||| |
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| T |
28711423 |
tttcatgttaagcttcaatctcctgttggtttggaacttcaggtgcct |
28711376 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #10
Raw Score: 31; E-Value: 0.00000005
Query Start/End: Original strand, 259 - 297
Target Start/End: Complemental strand, 28711300 - 28711262
Alignment:
| Q |
259 |
aagcttcattctcctgctggtttggaacttcagctgcct |
297 |
Q |
| |
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|||||||| |||||||||||||||||||||||| ||||| |
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| T |
28711300 |
aagcttcaatctcctgctggtttggaacttcaggtgcct |
28711262 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #11
Raw Score: 29; E-Value: 0.0000007
Query Start/End: Original strand, 48 - 107
Target Start/End: Original strand, 34925139 - 34925199
Alignment:
| Q |
48 |
agttatataggaatcagtacataataaccagacacgcataga-caagatttgcgagcttgg |
107 |
Q |
| |
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||||||||||||| |||||| |||||| |||||| |||||| ||||||||| |||||||| |
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|
| T |
34925139 |
agttatataggaaatagtacagaataacaagacacacatagaccaagatttgagagcttgg |
34925199 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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