View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF4094-2-Insertion-6 (Length: 446)
Name: NF4094-2-Insertion-6
Description: NF4094-2
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF4094-2-Insertion-6 |
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| [»] chr5 (4 HSPs) |
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| [»] scaffold0161 (1 HSPs) |
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Alignment Details
Target: chr5 (Bit Score: 423; Significance: 0; HSPs: 4)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 423; E-Value: 0
Query Start/End: Original strand, 8 - 446
Target Start/End: Original strand, 32471599 - 32472037
Alignment:
| Q |
8 |
ataatgcggcaaattcttcctacaatactcaactatctctttctccgttggtatatccctttccttcaacccttctttcaaactcacaaaagcacacggt |
107 |
Q |
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|||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
32471599 |
ataatgcggcaaattcttcctacagtactcaactatctctttctccgttggtatatccctttccttcaacccttctttcaaactcacaaaagcacacggt |
32471698 |
T |
|
| Q |
108 |
gtctccccccaaaactcatcctccctcgccaccaccgccgcctcattcaccgccggatgtccatacaaaaccgactcaacctccacactactcaaattct |
207 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
32471699 |
gtctccccccaaaactcatcctccctcgccaccaccgccgcctcattcaccgccggatgtccatacaaaaccgactcaacctccacactactcaaattct |
32471798 |
T |
|
| Q |
208 |
caccaccactaataatcacatcttttgacctatcttttatctctaaatacccatcttcatgcattacacctacatcaccagtgtaaaaccaacccttctt |
307 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||| |
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| T |
32471799 |
caccaccactaataatcacatcttttgacctatcttttatctctaaatacccatcttcatgcatcacacctacatcaccagtgtaaaaccaacccttctt |
32471898 |
T |
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| Q |
308 |
aaaacaattctttgttccttcactatctttcaaataccctaacataacacaaccacctctcataacaacttcaccaagcgttgcaccatcacgttttaca |
407 |
Q |
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||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
32471899 |
aaaacaattttttgttccttcactatctttcaaataccctaacataacacaaccacctctcataacaacttcaccaagcgttgcaccatcacgttttaca |
32471998 |
T |
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| Q |
408 |
ctttcaccacttggacccaccacatcaacctttgtcatc |
446 |
Q |
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| T |
32471999 |
ctttcaccacttggacccactacatcaacctttgtcatc |
32472037 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #2
Raw Score: 110; E-Value: 3e-55
Query Start/End: Original strand, 48 - 301
Target Start/End: Complemental strand, 32465232 - 32464979
Alignment:
| Q |
48 |
ttctccgttggtatatccctttccttcaacccttctttcaaactcacaaaagcacacggtgtctccccccaaaactcatcctccctcgccaccaccgccg |
147 |
Q |
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|||||||| ||||| ||| |||||||||| | || |||||||||||||| |||||||| ||||| ||||||||||||||| ||||||||||||||||| |
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| T |
32465232 |
ttctccgtcggtatctcctcttccttcaactcgtcattcaaactcacaaatgcacacggcgtctcgccccaaaactcatccggcctcgccaccaccgccg |
32465133 |
T |
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| Q |
148 |
cctcattcaccgccggatgtccatacaaaaccgactcaacctccacactactcaaattctcaccaccactaataatcacatcttttgacctatcttttat |
247 |
Q |
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| T |
32465132 |
cctccttaaccgccggatgcatatacaaaacagcctcaacctccacactactcatattctctccaccacttattatcacatcttttgtcctatccttaat |
32465033 |
T |
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| Q |
248 |
ctctaaatacccatcttcatgcattacacctacatcaccagtgtaaaaccaacc |
301 |
Q |
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||| | |||||||| | ||| || || || |||||||| |||||||||||||| |
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| T |
32465032 |
ctccatatacccattcttatgtataaccccaacatcacccgtgtaaaaccaacc |
32464979 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #3
Raw Score: 99; E-Value: 1e-48
Query Start/End: Original strand, 81 - 307
Target Start/End: Original strand, 32455936 - 32456162
Alignment:
| Q |
81 |
tctttcaaactcacaaaagcacacggtgtctccccccaaaactcatcctccctcgccaccaccgccgcctcattcaccgccggatgtccatacaaaaccg |
180 |
Q |
| |
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||||||||||||||||| ||||||| |||||||||||||| ||||| |||||||||||||||||||| || ||||||| ||| |||||||||| |
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| T |
32455936 |
tctttcaaactcacaaacccacacggcgtctccccccaaaaatcatctggtctcgccaccaccgccgcctccttaaccgccgaatgcatatacaaaaccc |
32456035 |
T |
|
| Q |
181 |
actcaacctccacactactcaaattctcaccaccactaataatcacatcttttgacctatcttttatctctaaatacccatcttcatgcattacacctac |
280 |
Q |
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|||||||||||||||||||| |||||| || ||||| || |||| |||||||||||||||||| ||||| ||||||||||| |||||||| || | || |
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| T |
32456036 |
cctcaacctccacactactcatattctctccgccacttattatcaaatcttttgacctatctttaatctccaaatacccatcctcatgcataaccgcaac |
32456135 |
T |
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| Q |
281 |
atcaccagtgtaaaaccaacccttctt |
307 |
Q |
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|||||| || ||||||||||| ||||| |
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| T |
32456136 |
atcacccgtataaaaccaaccattctt |
32456162 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #4
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 332 - 438
Target Start/End: Complemental strand, 32464945 - 32464839
Alignment:
| Q |
332 |
atctttcaaataccctaacataacacaaccacctctcataacaacttcaccaagcgttgcaccatcacgttttacactttcaccacttggacccaccaca |
431 |
Q |
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|||||| ||||| || | |||||||||| ||||| | | ||| | |||||||| |||| |||||||| ||||||||||||||| | || || |||||| |
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| T |
32464945 |
atcttttaaataaccaagcataacacaagcaccttttacaacgatttcaccaaccgttacaccatcattctttacactttcaccagtgggtccgaccaca |
32464846 |
T |
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| Q |
432 |
tcaacct |
438 |
Q |
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| T |
32464845 |
tcaacct |
32464839 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: scaffold0161 (Bit Score: 88; Significance: 4e-42; HSPs: 1)
Name: scaffold0161
Description:
Target: scaffold0161; HSP #1
Raw Score: 88; E-Value: 4e-42
Query Start/End: Original strand, 84 - 307
Target Start/End: Complemental strand, 24626 - 24403
Alignment:
| Q |
84 |
ttcaaactcacaaaagcacacggtgtctccccccaaaactcatcctccctcgccaccaccgccgcctcattcaccgccggatgtccatacaaaaccgact |
183 |
Q |
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|||||||||||||| |||||||| ||||| |||||||| |||||| ||| ||||||||||||||||| || ||||| ||||| |||||||| || |
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| T |
24626 |
ttcaaactcacaaacgcacacggcgtctctccccaaaaatcatccggcctagccaccaccgccgcctccttaaccgcgggatgcatgtacaaaacaccct |
24527 |
T |
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| Q |
184 |
caacctccacactactcaaattctcaccaccactaataatcacatcttttgacctatcttttatctctaaatacccatcttcatgcattacacctacatc |
283 |
Q |
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|||| ||||||||||||| |||||| |||||||| || |||||||||||| ||||||| || ||||| ||||||||||| |||||||| || | ||||| |
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| T |
24526 |
caacttccacactactcatattctccccaccacttattatcacatcttttaacctatccttaatctccaaatacccatcctcatgcataaccgcaacatc |
24427 |
T |
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| Q |
284 |
accagtgtaaaaccaacccttctt |
307 |
Q |
| |
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||| || ||||||||||| ||||| |
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| T |
24426 |
acctgtataaaaccaaccattctt |
24403 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3 (Bit Score: 36; Significance: 0.00000000004; HSPs: 1)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 36; E-Value: 0.00000000004
Query Start/End: Original strand, 218 - 289
Target Start/End: Original strand, 29003809 - 29003880
Alignment:
| Q |
218 |
aataatcacatcttttgacctatcttttatctctaaatacccatcttcatgcattacacctacatcaccagt |
289 |
Q |
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||||||||||||||| ||||||||||| || || ||||| ||||||| ||| || ||||| ||||||||||| |
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| T |
29003809 |
aataatcacatctttagacctatctttaatttccaaataaccatctttatgtataacaccaacatcaccagt |
29003880 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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