View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF4094-2-Insertion-7 (Length: 238)
Name: NF4094-2-Insertion-7
Description: NF4094-2
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF4094-2-Insertion-7 |
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| [»] chr1 (3 HSPs) |
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| [»] scaffold1337 (1 HSPs) |
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| [»] scaffold0067 (1 HSPs) |
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Alignment Details
Target: chr1 (Bit Score: 179; Significance: 1e-96; HSPs: 3)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 179; E-Value: 1e-96
Query Start/End: Original strand, 37 - 238
Target Start/End: Complemental strand, 30578575 - 30578373
Alignment:
| Q |
37 |
acttgcttattgacttcaacaccaatgacccgcttagtcacattgcagacacgactggtacgacc-tggtagaatttgtgcggcatacctttgtgcacag |
135 |
Q |
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| T |
30578575 |
acttgcttattgacttcaacaccaatggcacgcttagtcacattccagacacgaccggtacgaccgtggtagaatttgtgcggcatacctttgtgcacag |
30578476 |
T |
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| Q |
136 |
ctccgttaactctaatatcgacatagtcgccgatatgataggtcctgaggtaggtggctaaggctattgttcccttcttgcggaagggacgagagaatga |
235 |
Q |
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| T |
30578475 |
ctccgttaactctaatatcgacatagtcgccgatatgataggtcctgaggtaggtggctaaggctattgttcccttcttgcggaagggacgagagaatga |
30578376 |
T |
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| Q |
236 |
atc |
238 |
Q |
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| T |
30578375 |
atc |
30578373 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #2
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 168 - 238
Target Start/End: Complemental strand, 21257252 - 21257183
Alignment:
| Q |
168 |
atatgataggtcctgaggtaggtggctaaggctattgttcccttcttgcggaagggacgagagaatgaatc |
238 |
Q |
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| T |
21257252 |
atatgatag-tcctgaggtatgtagctagggctattgttcctttcttggggaatggacaagagaacgaatc |
21257183 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #3
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 10 - 38
Target Start/End: Complemental strand, 30579536 - 30579508
Alignment:
| Q |
10 |
atcctcttcctcaatatcttgttcctaac |
38 |
Q |
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| T |
30579536 |
atcctcttcctcaatatcttgttcctaac |
30579508 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7 (Bit Score: 48; Significance: 1e-18; HSPs: 1)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 48; E-Value: 1e-18
Query Start/End: Original strand, 94 - 232
Target Start/End: Complemental strand, 43828552 - 43828413
Alignment:
| Q |
94 |
gtacgacc-tggtagaatttgtgcggcatacctttgtgcacagctccgttaactctaatatcgacatagtcgccgatatgataggtcctgaggtaggtgg |
192 |
Q |
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| T |
43828552 |
gtacgaccgtggtagaacttatgaggcatacccttgtgtacagcaccgttaaccctgacatcaacataatcgccgatgtgataggttctgaggtaagtgg |
43828453 |
T |
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| Q |
193 |
ctaaggctattgttcccttcttgcggaagggacgagagaa |
232 |
Q |
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| T |
43828452 |
caagggcgattgtacccttcttcctgaatggacgagagaa |
43828413 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: scaffold1337 (Bit Score: 30; Significance: 0.00000008; HSPs: 1)
Name: scaffold1337
Description:
Target: scaffold1337; HSP #1
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 138 - 187
Target Start/End: Complemental strand, 688 - 639
Alignment:
| Q |
138 |
ccgttaactctaatatcgacatagtcgccgatatgataggtcctgaggta |
187 |
Q |
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| T |
688 |
ccgttaatcctaatatcgacatagtcaccgatatgataagttctgaggta |
639 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: scaffold0067 (Bit Score: 30; Significance: 0.00000008; HSPs: 1)
Name: scaffold0067
Description:
Target: scaffold0067; HSP #1
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 138 - 187
Target Start/End: Original strand, 18310 - 18359
Alignment:
| Q |
138 |
ccgttaactctaatatcgacatagtcgccgatatgataggtcctgaggta |
187 |
Q |
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| T |
18310 |
ccgttaatcctaatatcgacatagtcaccgatatgataagttctgaggta |
18359 |
T |
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