View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF4094-2.5-Insertion-1 (Length: 627)

Name: NF4094-2.5-Insertion-1
Description: NF4094-2-5
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF4094-2.5-Insertion-1
NF4094-2.5-Insertion-1
[»] chr2 (15 HSPs)
chr2 (357-621)||(40875675-40875923)
chr2 (73-212)||(40875419-40875558)
chr2 (196-302)||(40875569-40875675)
chr2 (133-241)||(39918883-39918991)
chr2 (194-246)||(34149122-34149177)
chr2 (8-61)||(43820763-43820816)
chr2 (8-57)||(40874283-40874332)
chr2 (200-241)||(40874687-40874728)
chr2 (12-60)||(13453981-13454029)
chr2 (11-59)||(31227575-31227623)
chr2 (10-57)||(25507255-25507302)
chr2 (197-228)||(34148488-34148519)
chr2 (12-62)||(7258588-7258638)
chr2 (11-57)||(24727615-24727661)
chr2 (10-58)||(22966785-22966833)
[»] chr1 (7 HSPs)
chr1 (131-242)||(31566777-31566888)
chr1 (134-241)||(31569989-31570096)
chr1 (62-117)||(31568872-31568927)
chr1 (11-58)||(33694226-33694273)
chr1 (15-58)||(42577471-42577514)
chr1 (8-58)||(35883629-35883679)
chr1 (19-63)||(25989017-25989061)
[»] chr8 (7 HSPs)
chr8 (8-63)||(30170751-30170806)
chr8 (12-58)||(43066620-43066666)
chr8 (10-58)||(26629134-26629182)
chr8 (12-58)||(3155842-3155888)
chr8 (11-43)||(15116976-15117008)
chr8 (18-66)||(20996179-20996227)
chr8 (13-57)||(21526308-21526352)
[»] chr5 (6 HSPs)
chr5 (20-64)||(11306691-11306735)
chr5 (12-60)||(35475813-35475861)
chr5 (9-57)||(41621951-41621999)
chr5 (10-57)||(8728605-8728652)
chr5 (19-63)||(11881020-11881064)
chr5 (15-59)||(43057433-43057477)
[»] chr4 (3 HSPs)
chr4 (6-54)||(19899313-19899361)
chr4 (19-65)||(17363222-17363268)
chr4 (8-56)||(17367446-17367494)
[»] chr3 (5 HSPs)
chr3 (10-62)||(41448200-41448252)
chr3 (19-65)||(34271523-34271569)
chr3 (8-57)||(9327007-9327056)
chr3 (18-59)||(19150351-19150392)
chr3 (10-58)||(47187544-47187592)
[»] scaffold0115 (1 HSPs)
scaffold0115 (20-59)||(15222-15261)
[»] chr7 (2 HSPs)
chr7 (11-58)||(48395247-48395294)
chr7 (10-42)||(23816296-23816328)
[»] scaffold1625 (1 HSPs)
scaffold1625 (8-58)||(803-853)
[»] chr6 (1 HSPs)
chr6 (10-42)||(20029276-20029308)


Alignment Details
Target: chr2 (Bit Score: 203; Significance: 1e-110; HSPs: 15)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 203; E-Value: 1e-110
Query Start/End: Original strand, 357 - 621
Target Start/End: Original strand, 40875675 - 40875923
Alignment:
Q  357 cagggagaacaatgcattaaatcacacaatcatccgttaattctatttcatttggcataatgataatcttccatgcctaacacaaagcatcctacatttg 456  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  40875675 cagggagaacaatgcattaaatcacacaatcatccgttaattctatttcatttggcataatgataatcttccatgcctaacacaaagcatcctacatttg 40875774  T
Q  457 tgttccagcaatgatgacgtcgctacttgactctttttgaacgctctttatccaaagtgagggggtacatgtaaatgtaaatgacgtaaagacactctta 556  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||       |||||||||||||||||||||    
T  40875775 tgttccagcaatgatgacgtcgctacttgactctttttgaacgctctttatccaaagtgagggggtacatgt-------aatgacgtaaagacactctta 40875867  T
Q  557 taataaggggaagagcatagtcaggagcggagctcgaaccccctcagatttgttattttaccccc 621  Q
    |         ||||||||||||||||||||||| |||||||||||||||||||||||||||||||    
T  40875868 t---------aagagcatagtcaggagcggagcccgaaccccctcagatttgttattttaccccc 40875923  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #2
Raw Score: 116; E-Value: 1e-58
Query Start/End: Original strand, 73 - 212
Target Start/End: Original strand, 40875419 - 40875558
Alignment:
Q  73 ttatttgtttatttataaaaatgtaactcaattaattttaactaacgtgacataatgtaacaagaaatgttggcgcaccatggtgtggaacgggaccact 172  Q
    |||||| |||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||| ||||||||||||||| |||||||     
T  40875419 ttatttatttatttataaaaatgtaactcaattaattttaactaacgtgacataatgcaacaagaaatgttggcggaccatggtgtggaacaggaccacc 40875518  T
Q  173 taatgcccgaagaagaaataattaaatgtattgtactttt 212  Q
    ||||||||||||||||||||||||||||||||||| ||||    
T  40875519 taatgcccgaagaagaaataattaaatgtattgtattttt 40875558  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #3
Raw Score: 83; E-Value: 5e-39
Query Start/End: Original strand, 196 - 302
Target Start/End: Original strand, 40875569 - 40875675
Alignment:
Q  196 aaatgtattgtacttttaaatgtgtcatattaaataataaatattttccctnnnnnnnntctgaatttctagttgatcttgtgtttgaccataaacttca 295  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||||        |||||||||||||||||||||||||||||||||||||||||    
T  40875569 aaatgtattgtacttttaaatgtgtcatattaaataataaatattttccctaaaaaaaatctgaatttctagttgatcttgtgtttgaccataaacttca 40875668  T
Q  296 ctttgtc 302  Q
    |||||||    
T  40875669 ctttgtc 40875675  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #4
Raw Score: 77; E-Value: 2e-35
Query Start/End: Original strand, 133 - 241
Target Start/End: Original strand, 39918883 - 39918991
Alignment:
Q  133 caagaaatgttggcgcaccatggtgtggaacgggaccacttaatgcccgaagaagaaataattaaatgtattgtacttttaaatgtgtcatattaaataa 232  Q
    |||||||| |||||||||||||||||||||| ||||||| |||||||| ||||||||||| ||||||||||||||| |||||||||||||| | ||||||    
T  39918883 caagaaatattggcgcaccatggtgtggaacaggaccacataatgcccaaagaagaaatatttaaatgtattgtacctttaaatgtgtcatctaaaataa 39918982  T
Q  233 taaatattt 241  Q
    |||||||||    
T  39918983 taaatattt 39918991  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #5
Raw Score: 42; E-Value: 0.00000000000002
Query Start/End: Original strand, 194 - 246
Target Start/End: Original strand, 34149122 - 34149177
Alignment:
Q  194 ttaaatgtattgtacttttaaatgtgtcatat---taaataataaatattttccct 246  Q
    ||||||||||||||||||||||||||||||||   |||||||||||||||||||||    
T  34149122 ttaaatgtattgtacttttaaatgtgtcatattaataaataataaatattttccct 34149177  T

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Target: chr2; HSP #6
Raw Score: 38; E-Value: 0.000000000004
Query Start/End: Original strand, 8 - 61
Target Start/End: Original strand, 43820763 - 43820816
Alignment:
Q  8 atggttgtttcaaaagttgttaaaaagtgattgtacgaatttcatttctctatt 61  Q
    |||||||||||||||||||| ||||| ||||||||| ||| |||||||||||||    
T  43820763 atggttgtttcaaaagttgtaaaaaaatgattgtacaaatatcatttctctatt 43820816  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #7
Raw Score: 34; E-Value: 0.0000000009
Query Start/End: Original strand, 8 - 57
Target Start/End: Original strand, 40874283 - 40874332
Alignment:
Q  8 atggttgtttcaaaagttgttaaaaagtgattgtacgaatttcatttctc 57  Q
    |||||||||||||||||||||||||| || |||||| ||| |||||||||    
T  40874283 atggttgtttcaaaagttgttaaaaaatggttgtacaaatatcatttctc 40874332  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #8
Raw Score: 34; E-Value: 0.0000000009
Query Start/End: Original strand, 200 - 241
Target Start/End: Complemental strand, 40874728 - 40874687
Alignment:
Q  200 gtattgtacttttaaatgtgtcatattaaataataaatattt 241  Q
    ||||||||| |||||||||||||| |||||||||||||||||    
T  40874728 gtattgtacctttaaatgtgtcatcttaaataataaatattt 40874687  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #9
Raw Score: 33; E-Value: 0.000000004
Query Start/End: Original strand, 12 - 60
Target Start/End: Original strand, 13453981 - 13454029
Alignment:
Q  12 ttgtttcaaaagttgttaaaaagtgattgtacgaatttcatttctctat 60  Q
    |||||||||||||||| |||||||||||||||  || ||||||||||||    
T  13453981 ttgtttcaaaagttgtcaaaaagtgattgtacagatatcatttctctat 13454029  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #10
Raw Score: 33; E-Value: 0.000000004
Query Start/End: Original strand, 11 - 59
Target Start/End: Original strand, 31227575 - 31227623
Alignment:
Q  11 gttgtttcaaaagttgttaaaaagtgattgtacgaatttcatttctcta 59  Q
    ||||||||||||||||| |||||||||||||||  || |||||||||||    
T  31227575 gttgtttcaaaagttgtcaaaaagtgattgtacacatatcatttctcta 31227623  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #11
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 10 - 57
Target Start/End: Complemental strand, 25507302 - 25507255
Alignment:
Q  10 ggttgtttcaaaagttgttaaaaagtgattgtacgaatttcatttctc 57  Q
    |||||||||||||||||| |||||||| |||||| ||| |||||||||    
T  25507302 ggttgtttcaaaagttgtcaaaaagtggttgtacaaatatcatttctc 25507255  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #12
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 197 - 228
Target Start/End: Complemental strand, 34148519 - 34148488
Alignment:
Q  197 aatgtattgtacttttaaatgtgtcatattaa 228  Q
    ||||||||||||||||||||||||||||||||    
T  34148519 aatgtattgtacttttaaatgtgtcatattaa 34148488  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #13
Raw Score: 31; E-Value: 0.00000006
Query Start/End: Original strand, 12 - 62
Target Start/End: Original strand, 7258588 - 7258638
Alignment:
Q  12 ttgtttcaaaagttgttaaaaagtgattgtacgaatttcatttctctattt 62  Q
    ||||| |||||||||| ||| ||||||||||| ||| ||||||||||||||    
T  7258588 ttgttacaaaagttgtcaaagagtgattgtacaaatgtcatttctctattt 7258638  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #14
Raw Score: 31; E-Value: 0.00000006
Query Start/End: Original strand, 11 - 57
Target Start/End: Original strand, 24727615 - 24727661
Alignment:
Q  11 gttgtttcaaaagttgttaaaaagtgattgtacgaatttcatttctc 57  Q
    ||||||||||||||||| |||||||| |||||| ||| |||||||||    
T  24727615 gttgtttcaaaagttgtcaaaaagtggttgtacaaatatcatttctc 24727661  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #15
Raw Score: 29; E-Value: 0.0000009
Query Start/End: Original strand, 10 - 58
Target Start/End: Complemental strand, 22966833 - 22966785
Alignment:
Q  10 ggttgtttcaaaagttgttaaaaagtgattgtacgaatttcatttctct 58  Q
    |||||||||||||||| | |||||||| |||||| ||| ||||||||||    
T  22966833 ggttgtttcaaaagttatcaaaaagtggttgtacaaatatcatttctct 22966785  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1 (Bit Score: 56; Significance: 7e-23; HSPs: 7)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 56; E-Value: 7e-23
Query Start/End: Original strand, 131 - 242
Target Start/End: Complemental strand, 31566888 - 31566777
Alignment:
Q  131 aacaagaaatgttggcgcaccatggtgtggaacgggaccacttaatgcccgaagaagaaataattaaatgtattgtacttttaaatgtgtcatattaaat 230  Q
    ||||||||||| ||| |||||||||| || |||  ||| || |||||||| ||||||||||| |||||||||||||| || |||||||||||| ||||||    
T  31566888 aacaagaaatgctggtgcaccatggtatgaaacaagacaacataatgcccaaagaagaaatatttaaatgtattgtatttgtaaatgtgtcatcttaaat 31566789  T
Q  231 aataaatatttt 242  Q
    || |||||||||    
T  31566788 aacaaatatttt 31566777  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #2
Raw Score: 56; E-Value: 7e-23
Query Start/End: Original strand, 134 - 241
Target Start/End: Original strand, 31569989 - 31570096
Alignment:
Q  134 aagaaatgttggcgcaccatggtgtggaacgggaccacttaatgcccgaagaagaaataattaaatgtattgtacttttaaatgtgtcatattaaataat 233  Q
    |||||||||||  |||| ||||| |||||| | ||||| |||||||| || |||||||| ||||||||||||||  |||||||||||||| |||||||||    
T  31569989 aagaaatgttgaggcactatggtatggaacagtaccacataatgcccaaaaaagaaatatttaaatgtattgtagctttaaatgtgtcatcttaaataat 31570088  T
Q  234 aaatattt 241  Q
    ||||||||    
T  31570089 aaatattt 31570096  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #3
Raw Score: 44; E-Value: 0.000000000000001
Query Start/End: Original strand, 62 - 117
Target Start/End: Original strand, 31568872 - 31568927
Alignment:
Q  62 tataatgactattatttgtttatttataaaaatgtaactcaattaattttaactaa 117  Q
    ||||||||||||||||||||||||||||||||  ||||||||||| ||||||||||    
T  31568872 tataatgactattatttgtttatttataaaaacataactcaattagttttaactaa 31568927  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #4
Raw Score: 36; E-Value: 0.00000000006
Query Start/End: Original strand, 11 - 58
Target Start/End: Original strand, 33694226 - 33694273
Alignment:
Q  11 gttgtttcaaaagttgttaaaaagtgattgtacgaatttcatttctct 58  Q
    ||||||| ||||||||||||||||||||||||| ||| ||||||||||    
T  33694226 gttgttttaaaagttgttaaaaagtgattgtacaaatatcatttctct 33694273  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #5
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 15 - 58
Target Start/End: Complemental strand, 42577514 - 42577471
Alignment:
Q  15 tttcaaaagttgttaaaaagtgattgtacgaatttcatttctct 58  Q
    |||||||||||||||||| |||||||||| ||| ||||||||||    
T  42577514 tttcaaaagttgttaaaatgtgattgtacaaatatcatttctct 42577471  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #6
Raw Score: 31; E-Value: 0.00000006
Query Start/End: Original strand, 8 - 58
Target Start/End: Original strand, 35883629 - 35883679
Alignment:
Q  8 atggttgtttcaaaagttgttaaaaagtgattgtacgaatttcatttctct 58  Q
    |||||||||||||||||||| ||||| | ||||||| ||| ||||||||||    
T  35883629 atggttgtttcaaaagttgtcaaaaaataattgtacaaatatcatttctct 35883679  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #7
Raw Score: 29; E-Value: 0.0000009
Query Start/End: Original strand, 19 - 63
Target Start/End: Original strand, 25989017 - 25989061
Alignment:
Q  19 aaaagttgttaaaaagtgattgtacgaatttcatttctctattta 63  Q
    ||||||||||||||| || |||||| ||| |||||||||||||||    
T  25989017 aaaagttgttaaaaaatggttgtacaaatatcatttctctattta 25989061  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8 (Bit Score: 36; Significance: 0.00000000006; HSPs: 7)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 36; E-Value: 0.00000000006
Query Start/End: Original strand, 8 - 63
Target Start/End: Original strand, 30170751 - 30170806
Alignment:
Q  8 atggttgtttcaaaagttgttaaaaagtgattgtacgaatttcatttctctattta 63  Q
    |||||||||||||||||||| |||||||| |||||| ||| |||||||||| ||||    
T  30170751 atggttgtttcaaaagttgtcaaaaagtggttgtacaaatatcatttctcttttta 30170806  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #2
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 12 - 58
Target Start/End: Original strand, 43066620 - 43066666
Alignment:
Q  12 ttgtttcaaaagttgttaaaaagtgattgtacgaatttcatttctct 58  Q
    ||||||||||||||||||||||||| |||||| ||| ||||||||||    
T  43066620 ttgtttcaaaagttgttaaaaagtggttgtacaaatatcatttctct 43066666  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #3
Raw Score: 33; E-Value: 0.000000004
Query Start/End: Original strand, 10 - 58
Target Start/End: Original strand, 26629134 - 26629182
Alignment:
Q  10 ggttgtttcaaaagttgttaaaaagtgattgtacgaatttcatttctct 58  Q
    |||||||||||||||||| |||||||| |||||| ||| ||||||||||    
T  26629134 ggttgtttcaaaagttgtcaaaaagtggttgtacaaatatcatttctct 26629182  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #4
Raw Score: 31; E-Value: 0.00000006
Query Start/End: Original strand, 12 - 58
Target Start/End: Complemental strand, 3155888 - 3155842
Alignment:
Q  12 ttgtttcaaaagttgttaaaaagtgattgtacgaatttcatttctct 58  Q
    ||||| ||||||||||||||||||| |||||| ||| ||||||||||    
T  3155888 ttgttccaaaagttgttaaaaagtggttgtacaaatatcatttctct 3155842  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #5
Raw Score: 29; E-Value: 0.0000009
Query Start/End: Original strand, 11 - 43
Target Start/End: Original strand, 15116976 - 15117008
Alignment:
Q  11 gttgtttcaaaagttgttaaaaagtgattgtac 43  Q
    |||||||||||||||||||||||||| ||||||    
T  15116976 gttgtttcaaaagttgttaaaaagtggttgtac 15117008  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #6
Raw Score: 29; E-Value: 0.0000009
Query Start/End: Original strand, 18 - 66
Target Start/End: Original strand, 20996179 - 20996227
Alignment:
Q  18 caaaagttgttaaaaagtgattgtacgaatttcatttctctatttataa 66  Q
    ||||||||||| |||| ||||||||| ||| |||||||||| |||||||    
T  20996179 caaaagttgttcaaaaatgattgtacaaatatcatttctctttttataa 20996227  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #7
Raw Score: 29; E-Value: 0.0000009
Query Start/End: Original strand, 13 - 57
Target Start/End: Original strand, 21526308 - 21526352
Alignment:
Q  13 tgtttcaaaagttgttaaaaagtgattgtacgaatttcatttctc 57  Q
    |||| ||||||||||||||||||| |||||| ||| |||||||||    
T  21526308 tgttacaaaagttgttaaaaagtggttgtacaaatatcatttctc 21526352  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5 (Bit Score: 33; Significance: 0.000000004; HSPs: 6)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 33; E-Value: 0.000000004
Query Start/End: Original strand, 20 - 64
Target Start/End: Complemental strand, 11306735 - 11306691
Alignment:
Q  20 aaagttgttaaaaagtgattgtacgaatttcatttctctatttat 64  Q
    |||||||||||||||||||||||| ||| ||||||||| ||||||    
T  11306735 aaagttgttaaaaagtgattgtacaaatatcatttctcaatttat 11306691  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #2
Raw Score: 33; E-Value: 0.000000004
Query Start/End: Original strand, 12 - 60
Target Start/End: Complemental strand, 35475861 - 35475813
Alignment:
Q  12 ttgtttcaaaagttgttaaaaagtgattgtacgaatttcatttctctat 60  Q
    |||||| ||||||||||||||| ||||||||||||| ||| ||||||||    
T  35475861 ttgtttaaaaagttgttaaaaaatgattgtacgaatatcaattctctat 35475813  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #3
Raw Score: 33; E-Value: 0.000000004
Query Start/End: Original strand, 9 - 57
Target Start/End: Original strand, 41621951 - 41621999
Alignment:
Q  9 tggttgtttcaaaagttgttaaaaagtgattgtacgaatttcatttctc 57  Q
    ||||||||||||||||||| |||||||| |||||| ||| |||||||||    
T  41621951 tggttgtttcaaaagttgtcaaaaagtggttgtacaaatatcatttctc 41621999  T

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Target: chr5; HSP #4
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 10 - 57
Target Start/End: Original strand, 8728605 - 8728652
Alignment:
Q  10 ggttgtttcaaaagttgttaaaaagtgattgtacgaatttcatttctc 57  Q
    |||||||||||||||||| |||||||| |||||| ||| |||||||||    
T  8728605 ggttgtttcaaaagttgtcaaaaagtggttgtacaaatatcatttctc 8728652  T

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Target: chr5; HSP #5
Raw Score: 29; E-Value: 0.0000009
Query Start/End: Original strand, 19 - 63
Target Start/End: Original strand, 11881020 - 11881064
Alignment:
Q  19 aaaagttgttaaaaagtgattgtacgaatttcatttctctattta 63  Q
    ||||||||||||||| | ||||||| ||| |||||||||||||||    
T  11881020 aaaagttgttaaaaaataattgtacaaatatcatttctctattta 11881064  T

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Target: chr5; HSP #6
Raw Score: 29; E-Value: 0.0000009
Query Start/End: Original strand, 15 - 59
Target Start/End: Complemental strand, 43057477 - 43057433
Alignment:
Q  15 tttcaaaagttgttaaaaagtgattgtacgaatttcatttctcta 59  Q
    ||||||||||||| |||||||| |||||| ||| |||||||||||    
T  43057477 tttcaaaagttgtcaaaaagtggttgtacaaatatcatttctcta 43057433  T

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Target: chr4 (Bit Score: 33; Significance: 0.000000004; HSPs: 3)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 33; E-Value: 0.000000004
Query Start/End: Original strand, 6 - 54
Target Start/End: Complemental strand, 19899361 - 19899313
Alignment:
Q  6 caatggttgtttcaaaagttgttaaaaagtgattgtacgaatttcattt 54  Q
    ||||||||| ||||||||||||||||||||| |||||| ||| ||||||    
T  19899361 caatggttgcttcaaaagttgttaaaaagtggttgtacaaatatcattt 19899313  T

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Target: chr4; HSP #2
Raw Score: 31; E-Value: 0.00000006
Query Start/End: Original strand, 19 - 65
Target Start/End: Complemental strand, 17363268 - 17363222
Alignment:
Q  19 aaaagttgttaaaaagtgattgtacgaatttcatttctctatttata 65  Q
    ||||||||| | ||||||||||||| ||| |||||||||||||||||    
T  17363268 aaaagttgtaataaagtgattgtacaaatatcatttctctatttata 17363222  T

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Target: chr4; HSP #3
Raw Score: 29; E-Value: 0.0000009
Query Start/End: Original strand, 8 - 56
Target Start/End: Complemental strand, 17367494 - 17367446
Alignment:
Q  8 atggttgtttcaaaagttgttaaaaagtgattgtacgaatttcatttct 56  Q
    |||||||||||||||||||| |||||||| |||||  ||| ||||||||    
T  17367494 atggttgtttcaaaagttgtcaaaaagtggttgtataaatatcatttct 17367446  T

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Target: chr3 (Bit Score: 33; Significance: 0.000000004; HSPs: 5)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 33; E-Value: 0.000000004
Query Start/End: Original strand, 10 - 62
Target Start/End: Original strand, 41448200 - 41448252
Alignment:
Q  10 ggttgtttcaaaagttgttaaaaagtgattgtacgaatttcatttctctattt 62  Q
    ||||||||||||||||||| |||| || |||||| ||| ||||||||||||||    
T  41448200 ggttgtttcaaaagttgtttaaaaatggttgtacaaatatcatttctctattt 41448252  T

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Target: chr3; HSP #2
Raw Score: 31; E-Value: 0.00000006
Query Start/End: Original strand, 19 - 65
Target Start/End: Original strand, 34271523 - 34271569
Alignment:
Q  19 aaaagttgttaaaaagtgattgtacgaatttcatttctctatttata 65  Q
    ||||||||||| |||||| |||||| ||| |||||||||||||||||    
T  34271523 aaaagttgttacaaagtggttgtacaaatatcatttctctatttata 34271569  T

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Target: chr3; HSP #3
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 8 - 57
Target Start/End: Original strand, 9327007 - 9327056
Alignment:
Q  8 atggttgtttcaaaagttgttaaaaagtgattgtacgaatttcatttctc 57  Q
    ||||||||||||||||||||  |||| ||||||||| ||| |||||||||    
T  9327007 atggttgtttcaaaagttgtcgaaaattgattgtacaaatatcatttctc 9327056  T

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Target: chr3; HSP #4
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 18 - 59
Target Start/End: Original strand, 19150351 - 19150392
Alignment:
Q  18 caaaagttgttaaaaagtgattgtacgaatttcatttctcta 59  Q
    |||||||||||||||| ||||||||| ||| |||||||||||    
T  19150351 caaaagttgttaaaaaatgattgtacaaatatcatttctcta 19150392  T

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Target: chr3; HSP #5
Raw Score: 29; E-Value: 0.0000009
Query Start/End: Original strand, 10 - 58
Target Start/End: Original strand, 47187544 - 47187592
Alignment:
Q  10 ggttgtttcaaaagttgttaaaaagtgattgtacgaatttcatttctct 58  Q
    |||||||||||||||||| ||||||| ||||||| ||| ||||| ||||    
T  47187544 ggttgtttcaaaagttgtgaaaaagtaattgtacaaatatcattcctct 47187592  T

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Target: scaffold0115 (Bit Score: 32; Significance: 0.00000001; HSPs: 1)
Name: scaffold0115
Description:

Target: scaffold0115; HSP #1
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 20 - 59
Target Start/End: Original strand, 15222 - 15261
Alignment:
Q  20 aaagttgttaaaaagtgattgtacgaatttcatttctcta 59  Q
    |||||||||||||||||||||||| ||| |||||||||||    
T  15222 aaagttgttaaaaagtgattgtacaaatatcatttctcta 15261  T

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Target: chr7 (Bit Score: 32; Significance: 0.00000001; HSPs: 2)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 11 - 58
Target Start/End: Complemental strand, 48395294 - 48395247
Alignment:
Q  11 gttgtttcaaaagttgttaaaaagtgattgtacgaatttcatttctct 58  Q
    ||||||||||||||||| |||||||| |||||| ||| ||||||||||    
T  48395294 gttgtttcaaaagttgtcaaaaagtggttgtacaaatatcatttctct 48395247  T

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Target: chr7; HSP #2
Raw Score: 29; E-Value: 0.0000009
Query Start/End: Original strand, 10 - 42
Target Start/End: Complemental strand, 23816328 - 23816296
Alignment:
Q  10 ggttgtttcaaaagttgttaaaaagtgattgta 42  Q
    ||||||| |||||||||||||||||||||||||    
T  23816328 ggttgttccaaaagttgttaaaaagtgattgta 23816296  T

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Target: scaffold1625 (Bit Score: 31; Significance: 0.00000006; HSPs: 1)
Name: scaffold1625
Description:

Target: scaffold1625; HSP #1
Raw Score: 31; E-Value: 0.00000006
Query Start/End: Original strand, 8 - 58
Target Start/End: Original strand, 803 - 853
Alignment:
Q  8 atggttgtttcaaaagttgttaaaaagtgattgtacgaatttcatttctct 58  Q
    |||||||||||||||||||| ||||| ||||||||| ||| ||||| ||||    
T  803 atggttgtttcaaaagttgtcaaaaaatgattgtacaaatatcattcctct 853  T

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Target: chr6 (Bit Score: 29; Significance: 0.0000009; HSPs: 1)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 29; E-Value: 0.0000009
Query Start/End: Original strand, 10 - 42
Target Start/End: Complemental strand, 20029308 - 20029276
Alignment:
Q  10 ggttgtttcaaaagttgttaaaaagtgattgta 42  Q
    ||||||||||||||||||||||||||| |||||    
T  20029308 ggttgtttcaaaagttgttaaaaagtggttgta 20029276  T

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