View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF4094-2.5-Insertion-2 (Length: 556)
Name: NF4094-2.5-Insertion-2
Description: NF4094-2-5
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF4094-2.5-Insertion-2 |
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Alignment Details
Target: chr3 (Bit Score: 509; Significance: 0; HSPs: 5)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 509; E-Value: 0
Query Start/End: Original strand, 8 - 555
Target Start/End: Original strand, 29333198 - 29333742
Alignment:
| Q |
8 |
gaaaaacaagcgagaacatactcaagaagctccacccaaccaccaagagaacaccggtaaaacctatcagcaagtaaaccaatcgcttcgcatagcgaaa |
107 |
Q |
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| T |
29333198 |
gaaaaacaagcgagaacatactcaagaagctccacccaaccaccaagagaacaccggtaaaacctatcagcaagtaaaccaatcgcttcgcatagcgaaa |
29333297 |
T |
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| Q |
108 |
gaaacagaatctcttcagattccgccttaagcgaatgaagaagaggattcttcagttcgagtaagataatagaattgagaggaccgttaattccttcggg |
207 |
Q |
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| T |
29333298 |
gaaacagaatctcttcagattccgccttaagcgaatgaagaagaggattcttcagttcgagtaagataatagaattgaaaggaccgttaattccttcggg |
29333397 |
T |
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| Q |
208 |
aagaacttgaggaagatgattaacggtttcgattctcgtttgaatcggaggttgaaattctagaagctttgcaagtttcaaagcgaatgcgttagggtaa |
307 |
Q |
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| T |
29333398 |
aagaacttgaagaagatgattaacggtttcgattctcgtttgaatcggaggttgaaattctagaagctttgcaagtttcaaagcgaatgcgttagggtaa |
29333497 |
T |
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| Q |
308 |
tgatgtgcgaatgatttgaaaattgtgaataatgattcgtccttggaattcgcgtactcgtcgattacttcttgaagcaatgaaagatcgttggattgaa |
407 |
Q |
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| T |
29333498 |
tgatgtgcgaatgatttgaaaattgtgaataatgattcgtccttggaattcgcgtactcgtcgattacttcttgaagcgatgaaagatcgttggattgaa |
29333597 |
T |
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| Q |
408 |
gaatcgtttcgacgtgttgttgaagttcgaagccatggaggagtgattcgtcttggtttttcttcgatgcgtcttcgtttgttgactatttcttccaagt |
507 |
Q |
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| T |
29333598 |
gaatcgttgcgacgtgttgttgaagttcgaagccatggaggagtgattcgtcttgg-ttttcttcgatgcgtcttcgtttgttgactatttcttccaagt |
29333696 |
T |
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| Q |
508 |
agttgcgtggtggcgggtttatatccggttcgaaaaggggttgcgaag |
555 |
Q |
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| T |
29333697 |
agttgcgcggtggcgggtttatatccggttcgaaa--gggttgcgaag |
29333742 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #2
Raw Score: 41; E-Value: 0.00000000000005
Query Start/End: Original strand, 292 - 476
Target Start/End: Original strand, 29305102 - 29305285
Alignment:
| Q |
292 |
gaatgcgttagggtaatgatgtgcgaatgatttgaaaattgtgaataatgattcgtccttggaattcgcgtactcgtcgattacttcttgaagcaatgaa |
391 |
Q |
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| T |
29305102 |
gaatgcgttaggataatgaagtgtgaaagatttgaaaatcgtgaataaagattgattcctggtttgagagtattcatcgattgcttcttgcaacgacgag |
29305201 |
T |
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| Q |
392 |
agatcgttggattgaagaatcgtttcgacgtgttgttgaagttcgaagccatggaggagtgattcgtcttggtttttcttcgatg |
476 |
Q |
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| T |
29305202 |
aggtcgttggataggagaaacctttcggcgtgttgtcgaagttcgaagccgtggatgagtgatctgtcttgg-ttttcttcgatg |
29305285 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #3
Raw Score: 36; E-Value: 0.00000000005
Query Start/End: Original strand, 60 - 143
Target Start/End: Original strand, 29322059 - 29322142
Alignment:
| Q |
60 |
accggtaaaacctatcagcaagtaaaccaatcgcttcgcatagcgaaagaaacagaatctcttcagattccgccttaagcgaat |
143 |
Q |
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| T |
29322059 |
accggtacaacctgtcagcgaataaacccatcatttcgcatagcgaaggaaacagaatttcttcagattctaccttgagcgaat |
29322142 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #4
Raw Score: 33; E-Value: 0.000000003
Query Start/End: Original strand, 265 - 329
Target Start/End: Original strand, 29296005 - 29296069
Alignment:
| Q |
265 |
ttctagaagctttgcaagtttcaaagcgaatgcgttagggtaatgatgtgcgaatgatttgaaaa |
329 |
Q |
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| T |
29296005 |
ttctagaagtttcgcgagcttgaaagcgaatgcgttagggtaatgatgagcgagggatttgaaaa |
29296069 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #5
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 420 - 535
Target Start/End: Original strand, 29322419 - 29322533
Alignment:
| Q |
420 |
cgtgttgttgaagttcgaagccatggaggagtgattcgtcttggtttttcttcgatgcgtcttcgtttgttgactatttcttccaagtagttgcgtggtg |
519 |
Q |
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| T |
29322419 |
cgtgttcttgaagttggaggccgtggatgagtgatttatcttggttgtg-ttcgatgcgccttctcttgttcattatttcttccaagtgattgcgcagtg |
29322517 |
T |
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| Q |
520 |
gcgggtttatatccgg |
535 |
Q |
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| T |
29322518 |
gtgggtttatatccgg |
29322533 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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