View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF4094-2.5-Insertion-4 (Length: 370)
Name: NF4094-2.5-Insertion-4
Description: NF4094-2-5
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF4094-2.5-Insertion-4 |
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| [»] chr3 (4 HSPs) |
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Alignment Details
Target: chr3 (Bit Score: 303; Significance: 1e-170; HSPs: 4)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 303; E-Value: 1e-170
Query Start/End: Original strand, 17 - 370
Target Start/End: Original strand, 3081174 - 3081530
Alignment:
| Q |
17 |
tttggaactgttagatccaatactgaaaaatacatacacaacaaatgaagttattaaatgcatacacattggtttgttatgtgtacaagaagatgcagtg |
116 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
3081174 |
tttggaactgttagatccaatactgaaaaatacatacacaacaaatgaagttattaaatgcatacacattggtttgttatgtgtacaagaagatgcagtg |
3081273 |
T |
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| Q |
117 |
gatagaccaaccatgtccaatgttgttgtaatgctagcaagtgacacaatgacacttcccaatcctaatcatccagcattttcagttggaagaaaagtag |
216 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
3081274 |
gatagaccaaccatgtccaatgttgttgtaatgctagcaagtgacacaatgacacttcccaatcctaatcatccagcattttcagttggaagaaaagtag |
3081373 |
T |
|
| Q |
217 |
tggaaggtgaatcatcatcaaaagcttccaatgatccttctgtcaatgaagtaacagtaacaaatattttacc----taggtagtggatataacatggta |
312 |
Q |
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| T |
3081374 |
tggaaggtgaatcaacatcaaaagcttccaatgatccttctgtcaatgaagtaacagtaacaaatattttacctaggtaggtagtggatataacatggta |
3081473 |
T |
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| Q |
313 |
aataatttggactc-aatttcctatattattgaaattttctaaaatcacttcagtaagt |
370 |
Q |
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|||||||||||||| ||||||| |||||| ||||||| |||| |||||||||||||| |
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| T |
3081474 |
aataatttggactcaaatttcc--tattatcgaaatttcttaaagtcacttcagtaagt |
3081530 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #2
Raw Score: 221; E-Value: 1e-121
Query Start/End: Original strand, 17 - 305
Target Start/End: Original strand, 3095611 - 3095899
Alignment:
| Q |
17 |
tttggaactgttagatccaatactgaaaaatacatacacaacaaatgaagttattaaatgcatacacattggtttgttatgtgtacaagaagatgcagtg |
116 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||| |
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| T |
3095611 |
tttggaactgttagatccaatactgaaaaatacatacacaacaaatgaagttattaaatgcatacacattggtttgttgtgtgtacaagaagatgcagtg |
3095710 |
T |
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| Q |
117 |
gatagaccaaccatgtccaatgttgttgtaatgctagcaagtgacacaatgacacttcccaatcctaatcatccagcattttcagttggaagaaaagtag |
216 |
Q |
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| T |
3095711 |
gatagaccaaccatgtccaatgttgttgtaatgctagcaagtgacacaatgacacttcccaatcctaatcatccagcattttcagttggaagaaaagtaa |
3095810 |
T |
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| Q |
217 |
tggaaggtgaatcatcatcaaaagcttccaatgatccttctgtcaatgaagtaacagtaacaaatattttacctaggtagtggatataa |
305 |
Q |
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| T |
3095811 |
ctgatgatcaatcaacatctaaagcttccaaagatccttctgttaatgaagttacaatatcaaatgtttttcctaggtaggggatataa |
3095899 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #3
Raw Score: 135; E-Value: 3e-70
Query Start/End: Original strand, 17 - 215
Target Start/End: Complemental strand, 4547320 - 4547122
Alignment:
| Q |
17 |
tttggaactgttagatccaatactgaaaaatacatacacaacaaatgaagttattaaatgcatacacattggtttgttatgtgtacaagaagatgcagtg |
116 |
Q |
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|||||||||||| ||| ||||||||||||||||||||| || ||||||||||| || || ||||| ||||||||||| ||||||||||||||||||||| |
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| T |
4547320 |
tttggaactgttggatacaatactgaaaaatacatacataagcaatgaagttatgaagtgtatacatattggtttgttgtgtgtacaagaagatgcagtg |
4547221 |
T |
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| Q |
117 |
gatagaccaaccatgtccaatgttgttgtaatgctagcaagtgacacaatgacacttcccaatcctaatcatccagcattttcagttggaagaaaagta |
215 |
Q |
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||||||||||||||||||||||||||||| ||||| |||||||||||||| |||||||||||||||| ||||| |||||||||||||||||||||||| |
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| T |
4547220 |
gatagaccaaccatgtccaatgttgttgtcatgctggcaagtgacacaatagcacttcccaatcctaaacatcctgcattttcagttggaagaaaagta |
4547122 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #4
Raw Score: 38; E-Value: 0.000000000002
Query Start/End: Original strand, 247 - 304
Target Start/End: Complemental strand, 4547117 - 4547060
Alignment:
| Q |
247 |
atgatccttctgtcaatgaagtaacagtaacaaatattttacctaggtagtggatata |
304 |
Q |
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||||||||||||| |||||||||||| || |||||||||| ||||||||| ||||||| |
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| T |
4547117 |
atgatccttctgttaatgaagtaacaatatcaaatatttttcctaggtaggggatata |
4547060 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8 (Bit Score: 57; Significance: 1e-23; HSPs: 7)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 57; E-Value: 1e-23
Query Start/End: Original strand, 62 - 202
Target Start/End: Complemental strand, 15721894 - 15721754
Alignment:
| Q |
62 |
tgaagttattaaatgcatacacattggtttgttatgtgtacaagaagatgcagtggatagaccaaccatgtccaatgttgttgtaatgctagcaagtgac |
161 |
Q |
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|||||| || |||||||||||||| ||||| || ||||||||||||||||||| ||| ||||||| ||||||| |||||||| ||||||| |||||| |
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| T |
15721894 |
tgaagtaatgaaatgcatacacataggtttattgtgtgtacaagaagatgcagcagatcgaccaacaatgtccaccgttgttgtcatgctaggtagtgac |
15721795 |
T |
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| Q |
162 |
acaatgacacttcccaatcctaatcatccagcattttcagt |
202 |
Q |
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| T |
15721794 |
acaataacccttccaaatcccaagccaccagcattttcagt |
15721754 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #2
Raw Score: 48; E-Value: 2e-18
Query Start/End: Original strand, 75 - 210
Target Start/End: Complemental strand, 15692193 - 15692058
Alignment:
| Q |
75 |
tgcatacacattggtttgttatgtgtacaagaagatgcagtggatagaccaaccatgtccaatgttgttgtaatgctagcaagtgacacaatgacacttc |
174 |
Q |
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|||||| |||| ||| | || ||||| ||||||||||| | ||||||||||||||||| | ||||||||||||| | || |||||||||||||| |||| |
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| T |
15692193 |
tgcataaacataggtcttttgtgtgttcaagaagatgcggcagatagaccaaccatgtcaactgttgttgtaatgttggctagtgacacaatgacccttc |
15692094 |
T |
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| Q |
175 |
ccaatcctaatcatccagcattttcagttggaagaa |
210 |
Q |
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| || || || || || ||||||||| ||||||||| |
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| T |
15692093 |
caaaacccaaacaacctgcattttcaattggaagaa |
15692058 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #3
Raw Score: 41; E-Value: 0.00000000000004
Query Start/End: Original strand, 66 - 210
Target Start/End: Complemental strand, 15696597 - 15696453
Alignment:
| Q |
66 |
gttattaaatgcatacacattggtttgttatgtgtacaagaagatgcagtggatagaccaaccatgtccaatgttgttgtaatgctagcaagtgacacaa |
165 |
Q |
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| T |
15696597 |
gttatgaagtgcatacacattggtttattgtgtgtacaacaagatgctgcagatcgaccaaccatgtccacggtcgttgctatgctaggcagtgacacaa |
15696498 |
T |
|
| Q |
166 |
tgacacttcccaatcctaatcatccagcattttcagttggaagaa |
210 |
Q |
| |
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|| | |||| || || || || || ||||||||||| ||||||| |
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| T |
15696497 |
tgcccattccaaaacccaagcaaccggcattttcagtaggaagaa |
15696453 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #4
Raw Score: 41; E-Value: 0.00000000000004
Query Start/End: Original strand, 74 - 210
Target Start/End: Complemental strand, 15703189 - 15703053
Alignment:
| Q |
74 |
atgcatacacattggtttgttatgtgtacaagaagatgcagtggatagaccaaccatgtccaatgttgttgtaatgctagcaagtgacacaatgacactt |
173 |
Q |
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||||||||||| |||||| || || ||||||||||||||| ||| ||||||||||||||| || ||| | ||||||| ||||||||||||| | ||| |
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| T |
15703189 |
atgcatacacaatggtttattgtgcatacaagaagatgcagcagatcgaccaaccatgtccaccgtcgttctcatgctaggaagtgacacaatgcctctt |
15703090 |
T |
|
| Q |
174 |
cccaatcctaatcatccagcattttcagttggaagaa |
210 |
Q |
| |
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|| || || | | ||||||||||||||||||||| |
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| T |
15703089 |
ccgaaacccatgaaagcagcattttcagttggaagaa |
15703053 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #5
Raw Score: 37; E-Value: 0.000000000009
Query Start/End: Original strand, 78 - 210
Target Start/End: Complemental strand, 15763724 - 15763592
Alignment:
| Q |
78 |
atacacattggtttgttatgtgtacaagaagatgcagtggatagaccaaccatgtccaatgttgttgtaatgctagcaagtgacacaatgacacttccca |
177 |
Q |
| |
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|||||||||||||| || ||||||||||||||||||| ||| |||||||||| |||| ||| ||| ||||||| ||||| ||| | | ||||| |
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| T |
15763724 |
atacacattggtttattgtgtgtacaagaagatgcagcagatcgaccaaccatttccactgtcgttcgtatgctagggagtgatacagtagctcttccac |
15763625 |
T |
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| Q |
178 |
atcctaatcatccagcattttcagttggaagaa |
210 |
Q |
| |
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| || ||||| ||||||||||||||||| |||| |
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| T |
15763624 |
aacccaatcaaccagcattttcagttgggagaa |
15763592 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #6
Raw Score: 34; E-Value: 0.0000000005
Query Start/End: Original strand, 78 - 135
Target Start/End: Complemental strand, 15804756 - 15804699
Alignment:
| Q |
78 |
atacacattggtttgttatgtgtacaagaagatgcagtggatagaccaaccatgtcca |
135 |
Q |
| |
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|||||||||||||| | ||||||||||||||||||| ||| ||||||||||||||| |
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|
| T |
15804756 |
atacacattggtttactttgtgtacaagaagatgcagcagatcgaccaaccatgtcca |
15804699 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #7
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 78 - 164
Target Start/End: Complemental strand, 15799142 - 15799056
Alignment:
| Q |
78 |
atacacattggtttgttatgtgtacaagaagatgcagtggatagaccaaccatgtccaatgttgttgtaatgctagcaagtgacaca |
164 |
Q |
| |
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|||||||||||||| | ||||||||||||||||||| ||| ||||||| ||||||| |||||| ||||||| ||||||||| |
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| T |
15799142 |
atacacattggtttactttgtgtacaagaagatgcagcagatcgaccaacgatgtccaccgttgttcgcatgctagggagtgacaca |
15799056 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1 (Bit Score: 34; Significance: 0.0000000005; HSPs: 1)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 34; E-Value: 0.0000000005
Query Start/End: Original strand, 62 - 107
Target Start/End: Original strand, 47593954 - 47593999
Alignment:
| Q |
62 |
tgaagttattaaatgcatacacattggtttgttatgtgtacaagaa |
107 |
Q |
| |
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|||||||||||| |||||||| ||||||||||||||||| |||||| |
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|
| T |
47593954 |
tgaagttattaagtgcatacagattggtttgttatgtgttcaagaa |
47593999 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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