View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF4094_high_11 (Length: 415)
Name: NF4094_high_11
Description: NF4094
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF4094_high_11 |
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Alignment Details
Target: chr1 (Bit Score: 375; Significance: 0; HSPs: 1)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 375; E-Value: 0
Query Start/End: Original strand, 1 - 400
Target Start/End: Original strand, 2729393 - 2729798
Alignment:
| Q |
1 |
ttcaccaagatcaagtac------tacatcatttatacagatcaacaaaacccagaaaaaataaatacataaaagtgattcaaagcaatgaaaatgaaga |
94 |
Q |
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| T |
2729393 |
ttcaccaagatcaagtacagtacatacatcatttatacaaatcaacaaaacccataaaaaataaatacataaaagtgattcaaagcaatgaaaatgaaga |
2729492 |
T |
|
| Q |
95 |
acctgatccattccagaaggcagaggttgagcaacaaaagtagggatctcatccatatactgatcactcttaccagaatgcaaaatcctagtaaatccac |
194 |
Q |
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| T |
2729493 |
acctgatccattccagaaggcagaggttgagcaacaaaagtagggatctcatccatatactgatcactcttaccagaatgcaaaatcctagtaaatccac |
2729592 |
T |
|
| Q |
195 |
ccataccagaattctcatcaccactttccttcatcttcttaaaccaataatacataactctacactgccatgtattgtaaacagaatcagaagctgtaac |
294 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
2729593 |
ccataccagaattctcatcaccactttccttcatcttcttaaaccaataatacataactctacactgccatgtattgtaaacagaatcagaagctgtaac |
2729692 |
T |
|
| Q |
295 |
tgctgtatgaaataatctcttagaagaagcactttttctattaagtggcatcttgattattgggtcgatttttattgatggtttacgtgatggaccagga |
394 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
2729693 |
tgctgtatgaaataatctcttagaagaagcactttttctattaagtggcatcttgattattgggtcgatttttattgatggtttacgtgatggaccagga |
2729792 |
T |
|
| Q |
395 |
aaatct |
400 |
Q |
| |
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|||||| |
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| T |
2729793 |
aaatct |
2729798 |
T |
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