View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF4094_high_12 (Length: 405)
Name: NF4094_high_12
Description: NF4094
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF4094_high_12 |
 | |
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Alignment Details
Target: chr7 (Bit Score: 267; Significance: 1e-149; HSPs: 11)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 267; E-Value: 1e-149
Query Start/End: Original strand, 1 - 396
Target Start/End: Original strand, 6180844 - 6181239
Alignment:
| Q |
1 |
cctttttctccaatgccgaagacaagttgtcagctctaactctttcatcatcttcatcaagcttcaagcctattctttttgctatatcatgttgcaattt |
100 |
Q |
| |
|
||||||||||||||||| |||||| |||| ||||||||||| ||||||||||||||||||||||||||||||||||||||| |||||||||||||| ||| |
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|
| T |
6180844 |
cctttttctccaatgccaaagacaggttgccagctctaactttttcatcatcttcatcaagcttcaagcctattctttttgttatatcatgttgcagttt |
6180943 |
T |
|
| Q |
101 |
tgagatggtatgattgtgagaaacagtgacccaaaacacatccttgaaagttgctttcctttttatttcattctccacgagagttgcaagtaaagttttt |
200 |
Q |
| |
|
||||||| ||| ||| ||||||||||||||||||||||||||||| ||||||||||||||||||| |||||||||||||||||||||||||||||||||| |
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|
| T |
6180944 |
tgagatgctataattttgagaaacagtgacccaaaacacatccttaaaagttgctttcctttttacttcattctccacgagagttgcaagtaaagttttt |
6181043 |
T |
|
| Q |
201 |
cccacacctcccattccatatatgccaatgacaaagactttatcatcagcaagttgtttcaacactttacgaannnnnnnatctaatctccccccgacat |
300 |
Q |
| |
|
|| || ||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||| || | ||||||||||||||||||| |
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|
| T |
6181044 |
cctactcctcccattccatatatgccaatgacaaagactttatcatcgtcaagttgtttcaacacttcacagatatttttatctaatctccccccgacaa |
6181143 |
T |
|
| Q |
301 |
attcagtcgacaaagtgagaggcttctttttcttgtgctgtttcatattgatgatcaacttatttatcttataaatatcatctaagctattcatct |
396 |
Q |
| |
|
||||||| |||||||||| ||||||||||||||||| | |||||||||||||||||||||||||||||||| ||| |||||| |||||||||||| |
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|
| T |
6181144 |
attcagttgacaaagtgaaaggcttctttttcttgtaatctttcatattgatgatcaacttatttatcttatgaatgtcatctgagctattcatct |
6181239 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #2
Raw Score: 249; E-Value: 1e-138
Query Start/End: Original strand, 1 - 398
Target Start/End: Original strand, 6247665 - 6248062
Alignment:
| Q |
1 |
cctttttctccaatgccgaagacaagttgtcagctctaactctttcatcatcttcatcaagcttcaagcctattctttttgctatatcatgttgcaattt |
100 |
Q |
| |
|
||||||||||||||||| |||| |||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||| |||||||| ||| |
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|
| T |
6247665 |
cctttttctccaatgccaaagataagttgtcagctctaactttttcatcatcttcatcaagcttcaagcctattctttttgctatattatgttgcagttt |
6247764 |
T |
|
| Q |
101 |
tgagatggtatgattgtgagaaacagtgacccaaaacacatccttgaaagttgctttcctttttatttcattctccacgagagttgcaagtaaagttttt |
200 |
Q |
| |
|
| ||||| ||| ||||||||||||||||||||||||||||| ||| ||||||||||||||||||| |||||||||||||||||||||| ||||||||||| |
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|
| T |
6247765 |
taagatgctataattgtgagaaacagtgacccaaaacacatgcttaaaagttgctttcctttttacttcattctccacgagagttgcatgtaaagttttt |
6247864 |
T |
|
| Q |
201 |
cccacacctcccattccatatatgccaatgacaaagactttatcatcagcaagttgtttcaacactttacgaannnnnnnatctaatctccccccgacat |
300 |
Q |
| |
|
|| || ||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||| | | ||||||||||||||||||| |
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|
| T |
6247865 |
cctactcctcccattccatatatgccaatgacaaagactttatcatcgtcaagttgtttcaacactttatggattttttcatctaatctccccccgacaa |
6247964 |
T |
|
| Q |
301 |
attcagtcgacaaagtgagaggcttctttttcttgtgctgtttcatattgatgatcaacttatttatcttataaatatcatctaagctattcatctca |
398 |
Q |
| |
|
||||||| |||||||||| |||||||||||||||||| ||||||||||| ||| || | |||||||| || ||| |||||| |||||||||||||| |
|
|
| T |
6247965 |
attcagttgacaaagtgaaaggcttctttttcttgtgtcgtttcatattgtcgatgaaatgatttatctcatgaatgtcatctgagctattcatctca |
6248062 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #3
Raw Score: 193; E-Value: 1e-105
Query Start/End: Original strand, 1 - 330
Target Start/End: Original strand, 6213278 - 6213607
Alignment:
| Q |
1 |
cctttttctccaatgccgaagacaagttgtcagctctaactctttcatcatcttcatcaagcttcaagcctattctttttgctatatcatgttgcaattt |
100 |
Q |
| |
|
||||||||| ||||||| ||||||| || || ||||||| |||||||||||||||||||||||||| |||||||||||||| ||||||||||||||||| |
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|
| T |
6213278 |
cctttttcttcaatgccaaagacaaattttctgctctaattctttcatcatcttcatcaagcttcacacctattctttttgcaatatcatgttgcaattt |
6213377 |
T |
|
| Q |
101 |
tgagatggtatgattgtgagaaacagtgacccaaaacacatccttgaaagttgctttcctttttatttcattctccacgagagttgcaagtaaagttttt |
200 |
Q |
| |
|
||||||| | | ||||||||||||||||||||||||||||| ||| ||||||||||||||||||| |||||| ||||||||||||||||||||||||||| |
|
|
| T |
6213378 |
tgagatgctgtaattgtgagaaacagtgacccaaaacacatgcttaaaagttgctttcctttttacttcattttccacgagagttgcaagtaaagttttt |
6213477 |
T |
|
| Q |
201 |
cccacacctcccattccatatatgccaatgacaaagactttatcatcagcaagttgtttcaacactttacgaannnnnnnatctaatctccccccgacat |
300 |
Q |
| |
|
||||| ||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||| | | | || |||| || ||||||| |
|
|
| T |
6213478 |
cccactcctcccattccatatatgccaatgacaaagactttatcatcagcaaggagtttcaacacttcatggatattttcatttaatttcgacccgacaa |
6213577 |
T |
|
| Q |
301 |
attcagtcgacaaagtgagaggcttctttt |
330 |
Q |
| |
|
||||||||| ||||||||||||||| |||| |
|
|
| T |
6213578 |
attcagtcggcaaagtgagaggcttatttt |
6213607 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #4
Raw Score: 188; E-Value: 1e-102
Query Start/End: Original strand, 1 - 248
Target Start/End: Original strand, 6106459 - 6106706
Alignment:
| Q |
1 |
cctttttctccaatgccgaagacaagttgtcagctctaactctttcatcatcttcatcaagcttcaagcctattctttttgctatatcatgttgcaattt |
100 |
Q |
| |
|
|||||||||||||| |||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||| | ||| |
|
|
| T |
6106459 |
cctttttctccaataccgaagacaagttgtcagctctaactctttcatcatctgcatcaagcttcaagcctattctttttgctatatcatgttggagttt |
6106558 |
T |
|
| Q |
101 |
tgagatggtatgattgtgagaaacagtgacccaaaacacatccttgaaagttgctttcctttttatttcattctccacgagagttgcaagtaaagttttt |
200 |
Q |
| |
|
||||||| ||||||||||||||||||||| ||||| ||||||||| ||||||| |||||||||| ||| |||||||||||||||||||||||||||||| |
|
|
| T |
6106559 |
tgagatgctatgattgtgagaaacagtgatccaaatcacatccttaaaagttggtttcctttttccttccttctccacgagagttgcaagtaaagttttt |
6106658 |
T |
|
| Q |
201 |
cccacacctcccattccatatatgccaatgacaaagactttatcatca |
248 |
Q |
| |
|
|||||||||||||||||| |||||||||| ||||||||||| |||||| |
|
|
| T |
6106659 |
cccacacctcccattccacatatgccaattacaaagactttgtcatca |
6106706 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #5
Raw Score: 171; E-Value: 1e-91
Query Start/End: Original strand, 1 - 243
Target Start/End: Original strand, 6237726 - 6237968
Alignment:
| Q |
1 |
cctttttctccaatgccgaagacaagttgtcagctctaactctttcatcatcttcatcaagcttcaagcctattctttttgctatatcatgttgcaattt |
100 |
Q |
| |
|
||||||||||||||||| ||||||| || || ||||||| |||||||||||||||||||||||||| |||||| ||||||||||||||||||||| ||| |
|
|
| T |
6237726 |
cctttttctccaatgccaaagacaaattttctgctctaattctttcatcatcttcatcaagcttcacacctattatttttgctatatcatgttgcagttt |
6237825 |
T |
|
| Q |
101 |
tgagatggtatgattgtgagaaacagtgacccaaaacacatccttgaaagttgctttcctttttatttcattctccacgagagttgcaagtaaagttttt |
200 |
Q |
| |
|
||||||| ||| ||||||||||||||||||||||||||||||||| ||||||||||||||||||| |||||||||||||||||||||||||||||||||| |
|
|
| T |
6237826 |
tgagatgctataattgtgagaaacagtgacccaaaacacatccttaaaagttgctttcctttttacttcattctccacgagagttgcaagtaaagttttt |
6237925 |
T |
|
| Q |
201 |
cccacacctcccattccatatatgccaatgacaaagactttat |
243 |
Q |
| |
|
|| || |||||||||||| |||||||||| ||||| ||||||| |
|
|
| T |
6237926 |
ccgactcctcccattccacatatgccaataacaaacactttat |
6237968 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #6
Raw Score: 155; E-Value: 4e-82
Query Start/End: Original strand, 1 - 247
Target Start/End: Original strand, 6208427 - 6208673
Alignment:
| Q |
1 |
cctttttctccaatgccgaagacaagttgtcagctctaactctttcatcatcttcatcaagcttcaagcctattctttttgctatatcatgttgcaattt |
100 |
Q |
| |
|
||||||||||||||||| |||||| || || ||||||| ||||||||| |||||||||||||||| |||||||||||||||||||||| ||||| ||| |
|
|
| T |
6208427 |
cctttttctccaatgccagagacaaattttctgctctaattctttcatcgtcttcatcaagcttcacacctattctttttgctatatcattttgcagttt |
6208526 |
T |
|
| Q |
101 |
tgagatggtatgattgtgagaaacagtgacccaaaacacatccttgaaagttgctttcctttttatttcattctccacgagagttgcaagtaaagttttt |
200 |
Q |
| |
|
||||||| ||| ||||||||||||||||||||||||||||||||| ||| ||||||||||||||| |||||||||||| ||||||||||||||||||||| |
|
|
| T |
6208527 |
tgagatgctataattgtgagaaacagtgacccaaaacacatccttaaaacttgctttcctttttacttcattctccacaagagttgcaagtaaagttttt |
6208626 |
T |
|
| Q |
201 |
cccacacctcccattccatatatgccaatgacaaagactttatcatc |
247 |
Q |
| |
|
|| || |||||||||||| ||||||||| ||||| ||||||||||| |
|
|
| T |
6208627 |
ccgactcctcccattccacatatgccaacaacaaacactttatcatc |
6208673 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #7
Raw Score: 95; E-Value: 2e-46
Query Start/End: Original strand, 2 - 240
Target Start/End: Original strand, 6089289 - 6089527
Alignment:
| Q |
2 |
ctttttctccaatgccgaagacaagttgtcagctctaactctttcatcatcttcatcaagcttcaagcctattctttttgctatatcatgttgcaatttt |
101 |
Q |
| |
|
|||||||| || |||||| |||||||| || |||| || | | ||||| |||||||||||||||| || ||||||||||| ||||| |||||||||| | |
|
|
| T |
6089289 |
ctttttctgcagtgccgatgacaagttatctgctccaattttctcatcgtcttcatcaagcttcacaccaattctttttgcgatatcgtgttgcaattct |
6089388 |
T |
|
| Q |
102 |
gagatggtatgattgtgagaaacagtgacccaaaacacatccttgaaagttgctttcctttttatttcattctccacgagagttgcaagtaaagtttttc |
201 |
Q |
| |
|
|||| | |||| | |||||||| |||||||||||||| |||||| || ||||||||||| ||||||||| ||||||||||||||||||||||||| |
|
|
| T |
6089389 |
aagattttgaaattgggggaaacagtaacccaaaacacatctatgaaaggtggtttcctttttacttcattctcgacgagagttgcaagtaaagtttttc |
6089488 |
T |
|
| Q |
202 |
ccacacctcccattccatatatgccaatgacaaagactt |
240 |
Q |
| |
|
|||| || |||||||||||||| ||||| ||||| |||| |
|
|
| T |
6089489 |
ccactccccccattccatatataccaataacaaaaactt |
6089527 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #8
Raw Score: 85; E-Value: 2e-40
Query Start/End: Original strand, 1 - 141
Target Start/End: Original strand, 6234845 - 6234985
Alignment:
| Q |
1 |
cctttttctccaatgccgaagacaagttgtcagctctaactctttcatcatcttcatcaagcttcaagcctattctttttgctatatcatgttgcaattt |
100 |
Q |
| |
|
|||||||||| |||||| ||||||| | | ||||||| |||||||||||||||||||||||||| ||||||||| ||||||||||||||||||||| |
|
|
| T |
6234845 |
cctttttctcaaatgccaaagacaaaatttttgctctaattctttcatcatcttcatcaagcttcacatctattctttgtgctatatcatgttgcaattt |
6234944 |
T |
|
| Q |
101 |
tgagatggtatgattgtgagaaacagtgacccaaaacacat |
141 |
Q |
| |
|
||||||| ||| ||||||||||||||||||||||||||||| |
|
|
| T |
6234945 |
tgagatgttataattgtgagaaacagtgacccaaaacacat |
6234985 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #9
Raw Score: 59; E-Value: 7e-25
Query Start/End: Original strand, 133 - 219
Target Start/End: Original strand, 6094805 - 6094891
Alignment:
| Q |
133 |
aaaacacatccttgaaagttgctttcctttttatttcattctccacgagagttgcaagtaaagtttttcccacacctcccattccat |
219 |
Q |
| |
|
||||||||| | ||||||| |||||||||||| |||||||||||| |||||||||||||||||||||||||| ||||||||||||| |
|
|
| T |
6094805 |
aaaacacattgtcgaaagttcctttcctttttacttcattctccacaagagttgcaagtaaagtttttcccactcctcccattccat |
6094891 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #10
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 69 - 107
Target Start/End: Original strand, 6101233 - 6101271
Alignment:
| Q |
69 |
cctattctttttgctatatcatgttgcaattttgagatg |
107 |
Q |
| |
|
|||||||||||||| ||||||| |||||||||||||||| |
|
|
| T |
6101233 |
cctattctttttgcgatatcatcttgcaattttgagatg |
6101271 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #11
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 301 - 366
Target Start/End: Original strand, 6094973 - 6095038
Alignment:
| Q |
301 |
attcagtcgacaaagtgagaggcttctttttcttgtgctgtttcatattgatgatcaacttattta |
366 |
Q |
| |
|
|||||||||||||| |||||||||| | ||||||||| ||||||||| ||||||| ||||||| |
|
|
| T |
6094973 |
attcagtcgacaaaatgagaggcttttctttcttgtgtcgtttcatatctttgatcaatttattta |
6095038 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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