View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF4094_high_20 (Length: 350)
Name: NF4094_high_20
Description: NF4094
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF4094_high_20 |
 | |
|
Alignment Details
Target: chr1 (Bit Score: 273; Significance: 1e-152; HSPs: 1)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 273; E-Value: 1e-152
Query Start/End: Original strand, 1 - 340
Target Start/End: Complemental strand, 34423160 - 34422822
Alignment:
| Q |
1 |
cctacttttgcttataattaaggccagatggagtaacttttaatcactctcacctccactgcaaaacatgaatatatttaagatggtacatgaatgagag |
100 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||| ||||||||||||||||||||||||| |||||||||||| |
|
|
| T |
34423160 |
cctacttttgcttataattaaggccagatggagtaacttttaatccctctcacctccactacaaaacatgaatatatttaagatggcacatgaatgaga- |
34423062 |
T |
|
| Q |
101 |
aaatcattaatgaacagaacctcgaagtaactgattttttcagtttttcctttcttcgt-aaaaaagacacagaactcttttatatagatgttccacgat |
199 |
Q |
| |
|
||||||||||||||||||||||||||||||| |||||||||||||||||||||||||| |||||||||||| ||||||||||||||||||||||||||| |
|
|
| T |
34423061 |
-aatcattaatgaacagaacctcgaagtaactaattttttcagtttttcctttcttcgttaaaaaagacacaaaactcttttatatagatgttccacgat |
34422963 |
T |
|
| Q |
200 |
atacaatgacagaaatttgaggttagattagtttgacaacgctatttaacacaacagttnnnnnnntatacgcatgacataaaatagcattaaacaatgc |
299 |
Q |
| |
|
||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||| |
|
|
| T |
34422962 |
atacaatgacagaaagttgaggttagattagtttgacaacgctatttaacacaacagttgggggagtatacgcatgacataaaatagcattaaacaatgc |
34422863 |
T |
|
| Q |
300 |
tacagataataacataataagaggaatcaccttggtctgtg |
340 |
Q |
| |
|
|||||||||||||||||||| |||||||||||||||||||| |
|
|
| T |
34422862 |
tacagataataacataataataggaatcaccttggtctgtg |
34422822 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
© Oklahoma State University