View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF4094_high_22 (Length: 345)
Name: NF4094_high_22
Description: NF4094
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF4094_high_22 |
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Alignment Details
Target: chr7 (Bit Score: 148; Significance: 5e-78; HSPs: 10)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 148; E-Value: 5e-78
Query Start/End: Original strand, 112 - 335
Target Start/End: Original strand, 6237560 - 6237783
Alignment:
| Q |
112 |
agaggcaacatttgtattatagcatatgattggcagtccatctggtgacatacatgtttcaaacgagttgttataatcactttaatgccattcacttttg |
211 |
Q |
| |
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||||| ||||||||||||||| ||| || ||| || |||||||||||||||||||||||||| |||||||| | ||||||||||||||||||||||||| |
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| T |
6237560 |
agaggaaacatttgtattataccatttgtttgacaatccatctggtgacatacatgtttcaaccgagttgtcaaaatcactttaatgccattcacttttt |
6237659 |
T |
|
| Q |
212 |
gatgaattcctaccttctgcaaatcaatatatttccaaacatcatccaaaataagaattgattttctccttttctcccatgccaaagacaaaatttctgc |
311 |
Q |
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|
|||||||||| |||||||||||||||||||| |||||||||||||||||||||||||||||||||| | |||||||| |||||||||||||| ||||||| |
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| T |
6237660 |
gatgaattcccaccttctgcaaatcaatataattccaaacatcatccaaaataagaattgattttccctttttctccaatgccaaagacaaattttctgc |
6237759 |
T |
|
| Q |
312 |
cctaattttttcatcgtcttcatc |
335 |
Q |
| |
|
|||||| ||||||| |||||||| |
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|
| T |
6237760 |
tctaattctttcatcatcttcatc |
6237783 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #2
Raw Score: 144; E-Value: 1e-75
Query Start/End: Original strand, 112 - 335
Target Start/End: Original strand, 6208261 - 6208484
Alignment:
| Q |
112 |
agaggcaacatttgtattatagcatatgattggcagtccatctggtgacatacatgtttcaaacgagttgttataatcactttaatgccattcacttttg |
211 |
Q |
| |
|
||||| ||||||||||||||| ||| || || || |||||||||||||||||||||||||| |||||||| | ||||||||||||||||||||||||| |
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| T |
6208261 |
agaggaaacatttgtattatatcatttgtctgacaatccatctggtgacatacatgtttcaaccgagttgtcaaaatcactttaatgccattcacttttt |
6208360 |
T |
|
| Q |
212 |
gatgaattcctaccttctgcaaatcaatatatttccaaacatcatccaaaataagaattgattttctccttttctcccatgccaaagacaaaatttctgc |
311 |
Q |
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|||||||||| |||||||||||||||||||| |||||||||||||||||||||||||||||||||| | |||||||| |||||| ||||||| ||||||| |
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| T |
6208361 |
gatgaattcccaccttctgcaaatcaatataattccaaacatcatccaaaataagaattgattttccctttttctccaatgccagagacaaattttctgc |
6208460 |
T |
|
| Q |
312 |
cctaattttttcatcgtcttcatc |
335 |
Q |
| |
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|||||| |||||||||||||||| |
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|
| T |
6208461 |
tctaattctttcatcgtcttcatc |
6208484 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #3
Raw Score: 144; E-Value: 1e-75
Query Start/End: Original strand, 112 - 335
Target Start/End: Original strand, 6234679 - 6234902
Alignment:
| Q |
112 |
agaggcaacatttgtattatagcatatgattggcagtccatctggtgacatacatgtttcaaacgagttgttataatcactttaatgccattcacttttg |
211 |
Q |
| |
|
||||| ||||||||||||||| ||| || || || |||||||||||||||||||||||||| |||||||| | |||||||||||||||||||||||||| |
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| T |
6234679 |
agaggaaacatttgtattatatcatttgtctgacaatccatctggtgacatacatgtttcaaccgagttgtcaaaatcactttaatgccattcacttttg |
6234778 |
T |
|
| Q |
212 |
gatgaattcctaccttctgcaaatcaatatatttccaaacatcatccaaaataagaattgattttctccttttctcccatgccaaagacaaaatttctgc |
311 |
Q |
| |
|
|||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||| | | ||||||| |||||||||||||||||| ||| |
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|
| T |
6234779 |
gatgaattcccaccttctgcaaatcaatatatttccaaacatcatccaaaataagaattgatttcccctttttctcaaatgccaaagacaaaatttttgc |
6234878 |
T |
|
| Q |
312 |
cctaattttttcatcgtcttcatc |
335 |
Q |
| |
|
|||||| ||||||| |||||||| |
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|
| T |
6234879 |
tctaattctttcatcatcttcatc |
6234902 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #4
Raw Score: 141; E-Value: 7e-74
Query Start/End: Original strand, 107 - 335
Target Start/End: Original strand, 6213107 - 6213335
Alignment:
| Q |
107 |
aactgagaggcaacatttgtattatagcatatgattggcagtccatctggtgacatacatgtttcaaacgagttgttataatcactttaatgccattcac |
206 |
Q |
| |
|
|||| ||||| |||||||||||||||||||||| ||||| |||||||||| ||||||||||| |||||||||||| | |||||||||||||||||| || |
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|
| T |
6213107 |
aactaagaggaaacatttgtattatagcatatgggtggcaatccatctggtaacatacatgttccaaacgagttgtcaaaatcactttaatgccatttac |
6213206 |
T |
|
| Q |
207 |
ttttggatgaattcctaccttctgcaaatcaatatatttccaaacatcatccaaaataagaattgattttctccttttctcccatgccaaagacaaaatt |
306 |
Q |
| |
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|| |||||||||||| | |||||||||||||||||||||||||||||||||||||||||||| |||||||| | |||||| | |||||||||||||| || |
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| T |
6213207 |
ttctggatgaattcccaacttctgcaaatcaatatatttccaaacatcatccaaaataagaactgattttccctttttcttcaatgccaaagacaaattt |
6213306 |
T |
|
| Q |
307 |
tctgccctaattttttcatcgtcttcatc |
335 |
Q |
| |
|
||||| |||||| ||||||| |||||||| |
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|
| T |
6213307 |
tctgctctaattctttcatcatcttcatc |
6213335 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #5
Raw Score: 138; E-Value: 4e-72
Query Start/End: Original strand, 109 - 302
Target Start/End: Original strand, 6106290 - 6106483
Alignment:
| Q |
109 |
ctgagaggcaacatttgtattatagcatatgattggcagtccatctggtgacatacatgtttcaaacgagttgttataatcactttaatgccattcactt |
208 |
Q |
| |
|
|||||||| || ||||||||||||||||||| ||||| | |||||||| |||||||||||||||||| ||||||| ||||||||||||||||||||||| |
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|
| T |
6106290 |
ctgagaggaaagatttgtattatagcatatgggtggcaattcatctggtcacatacatgtttcaaacgtgttgttagaatcactttaatgccattcactt |
6106389 |
T |
|
| Q |
209 |
ttggatgaattcctaccttctgcaaatcaatatatttccaaacatcatccaaaataagaattgattttctccttttctcccatgccaaagacaa |
302 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| | |||||||| || || ||||||| |
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|
| T |
6106390 |
ttggatgaattcctaccttctgcaaatcaatatatttccaaacatcatccaaaataagaattgattttccctttttctccaataccgaagacaa |
6106483 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #6
Raw Score: 135; E-Value: 3e-70
Query Start/End: Original strand, 121 - 335
Target Start/End: Original strand, 6247508 - 6247722
Alignment:
| Q |
121 |
atttgtattatagcatatgattggcagtccatctggtgacatacatgtttcaaacgagttgttataatcactttaatgccattcacttttggatgaattc |
220 |
Q |
| |
|
||||||| ||||||| ||| ||||| ||||||||||||||||||||||||||||||||||||| |||||||||||||||||| |||||||||||||||| |
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|
| T |
6247508 |
atttgtagtatagcacatggctggcaatccatctggtgacatacatgtttcaaacgagttgttagaatcactttaatgccatttacttttggatgaattc |
6247607 |
T |
|
| Q |
221 |
ctaccttctgcaaatcaatatatttccaaacatcatccaaaataagaattgattttctccttttctcccatgccaaagacaaaatttctgccctaatttt |
320 |
Q |
| |
|
| ||||||| ||||||||||||||||||||||||||||||||||||||||||||||| | |||||||| |||||||||| || | || || |||| ||| |
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|
| T |
6247608 |
ccaccttcttcaaatcaatatatttccaaacatcatccaaaataagaattgattttccctttttctccaatgccaaagataagttgtcagctctaacttt |
6247707 |
T |
|
| Q |
321 |
ttcatcgtcttcatc |
335 |
Q |
| |
|
|||||| |||||||| |
|
|
| T |
6247708 |
ttcatcatcttcatc |
6247722 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #7
Raw Score: 133; E-Value: 4e-69
Query Start/End: Original strand, 121 - 301
Target Start/End: Original strand, 6180687 - 6180867
Alignment:
| Q |
121 |
atttgtattatagcatatgattggcagtccatctggtgacatacatgtttcaaacgagttgttataatcactttaatgccattcacttttggatgaattc |
220 |
Q |
| |
|
||||||| ||||||| ||| ||||| ||||||||||||||||||||||||||||||||||||| |||||||||||||||||| |||||||||||||||| |
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|
| T |
6180687 |
atttgtagtatagcacatggctggcaatccatctggtgacatacatgtttcaaacgagttgttagaatcactttaatgccatttacttttggatgaattc |
6180786 |
T |
|
| Q |
221 |
ctaccttctgcaaatcaatatatttccaaacatcatccaaaataagaattgattttctccttttctcccatgccaaagaca |
301 |
Q |
| |
|
| ||||||| ||||||||||||||||||||||||||||||||||||||||||||||| | |||||||| |||||||||||| |
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|
| T |
6180787 |
ccaccttcttcaaatcaatatatttccaaacatcatccaaaataagaattgattttccctttttctccaatgccaaagaca |
6180867 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #8
Raw Score: 81; E-Value: 4e-38
Query Start/End: Original strand, 148 - 316
Target Start/End: Original strand, 6094525 - 6094693
Alignment:
| Q |
148 |
tccatctggtgacatacatgtttcaaacgagttgttataatcactttaatgccattcacttttggatgaattcctaccttctgcaaatcaatatatttcc |
247 |
Q |
| |
|
||||||| |||||| |||||||||||||||||||||| |||||||||||| ||||||| ||| || ||||||| ||||| ||||||||||| ||||||| |
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|
| T |
6094525 |
tccatctcgtgacacacatgtttcaaacgagttgttagaatcactttaattacattcacatttagaggaattcccaccttttgcaaatcaatgtatttcc |
6094624 |
T |
|
| Q |
248 |
aaacatcatccaaaataagaattgattttctccttttctcccatgccaaagacaaaatttctgccctaa |
316 |
Q |
| |
|
||||||| || | |||||||||||| |||| | || ||||| | |||||||||||| ||| |||||||| |
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|
| T |
6094625 |
aaacatcgtctagaataagaattgaatttccctttgtctccaacgccaaagacaaagtttttgccctaa |
6094693 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #9
Raw Score: 76; E-Value: 4e-35
Query Start/End: Original strand, 148 - 335
Target Start/End: Original strand, 6089158 - 6089345
Alignment:
| Q |
148 |
tccatctggtgacatacatgtttcaaacgagttgttataatcactttaatgccattcacttttggatgaattcctaccttctgcaaatcaatatatttcc |
247 |
Q |
| |
|
|||||||| ||||| ||| |||||||||||||||| | ||| |||||||| |||||||| |||| ||||||||| ||||| | ||||||||| ||||||| |
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|
| T |
6089158 |
tccatctgttgacacacaagtttcaaacgagttgtcagaattactttaataccattcacctttgtatgaattcccaccttttccaaatcaatgtatttcc |
6089257 |
T |
|
| Q |
248 |
aaacatcatccaaaataagaattgattttctccttttctcccatgccaaagacaaaatttctgccctaattttttcatcgtcttcatc |
335 |
Q |
| |
|
|||||||||||||||||| || |||||||| | |||||| | |||| | ||||| | ||||| | |||||| |||||||||||||| |
|
|
| T |
6089258 |
aaacatcatccaaaataataactgattttcgctttttctgcagtgccgatgacaagttatctgctccaattttctcatcgtcttcatc |
6089345 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #10
Raw Score: 41; E-Value: 0.00000000000003
Query Start/End: Original strand, 148 - 268
Target Start/End: Original strand, 6101041 - 6101161
Alignment:
| Q |
148 |
tccatctggtgacatacatgtttcaaacgagttgttataatcactttaatgccattcacttttggatgaattcctaccttctgcaaatcaatatatttcc |
247 |
Q |
| |
|
||||| || ||||| || ||||||||||||||||| | ||| | ||||||||||||| | |||| |||||||| | ||||| ||||| || || ||| |
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|
| T |
6101041 |
tccatttgttgacacacgtgtttcaaacgagttgtcagaatgagtttaatgccattcgttcttggctgaattccagctttctgaaaatcgatgtacctcc |
6101140 |
T |
|
| Q |
248 |
aaacatcatccaaaataagaa |
268 |
Q |
| |
|
||||||||||||||||||||| |
|
|
| T |
6101141 |
aaacatcatccaaaataagaa |
6101161 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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