View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF4094_high_48 (Length: 206)
Name: NF4094_high_48
Description: NF4094
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF4094_high_48 |
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Alignment Details
Target: chr5 (Bit Score: 174; Significance: 8e-94; HSPs: 1)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 174; E-Value: 8e-94
Query Start/End: Original strand, 18 - 191
Target Start/End: Complemental strand, 5654367 - 5654194
Alignment:
| Q |
18 |
agaaatttcatcaaacatttacaacagttcctgccactctacgtctcttcttccatgactgctttgttcaggtaattaatttcaattacatgcattttat |
117 |
Q |
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| T |
5654367 |
agaaatttcatcaaacatttacaacagttcctgccactctacgtctcttcttccatgactgctttgttcaggtaattaatttcaattacatgcattttat |
5654268 |
T |
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| Q |
118 |
ttggttcaccataaataaatgttaccttttctaatttatgttgtgcatgtctatcatattgcaattaccacagg |
191 |
Q |
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| T |
5654267 |
ttggttcaccataaataaatgttaccttttctaatttatgttgtgcatgtctatcatattgcaattaccacagg |
5654194 |
T |
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Target: chr4 (Bit Score: 35; Significance: 0.00000000007; HSPs: 1)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 35; E-Value: 0.00000000007
Query Start/End: Original strand, 18 - 100
Target Start/End: Original strand, 39800537 - 39800619
Alignment:
| Q |
18 |
agaaatttcatcaaacatttacaacagttcctgccactctacgtctcttcttccatgactgctttgttcaggtaattaatttc |
100 |
Q |
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|||||||||| ||||| ||| || |||||||| || || ||||||||||| ||||| || ||||||||||||||||||||| |
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| T |
39800537 |
agaaatttcaacaaacttttgttactgttcctgctacccttcgtctcttctttcatgattgttttgttcaggtaattaatttc |
39800619 |
T |
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