View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF4094_high_5 (Length: 487)
Name: NF4094_high_5
Description: NF4094
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF4094_high_5 |
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Alignment Details
Target: chr5 (Bit Score: 401; Significance: 0; HSPs: 1)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 401; E-Value: 0
Query Start/End: Original strand, 11 - 469
Target Start/End: Original strand, 5562425 - 5562887
Alignment:
| Q |
11 |
cacagatcacgtggccattgggcagtatagtttgaaactttgaaatttgagtttgaaaggcaagtcagcatgggtcaaagacacacac----attcatca |
106 |
Q |
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| T |
5562425 |
cacagatcacgtagccattgggcagtatagtttgaaactttgaaatttgagtttgaaaggcaagtcagcatgggtcaaagacacccacccacattcatca |
5562524 |
T |
|
| Q |
107 |
cgtgatcacattgggtatggtcgtggataataagtgaactttttattatcctcggcaggcctaaaattaggtatttcgtggcccataagcatccc-gatt |
205 |
Q |
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| T |
5562525 |
cgtgatcacattgggtatggtcgtggataataagtgaacttt--attatcctcggcaggcctaaaattaggtatttcgtggcccataagcatccccgatt |
5562622 |
T |
|
| Q |
206 |
tatggaaaaagcaagtactctgtttcaaggtcagtgtcctactcttgtcccaaaacgagccaatgtcacctctatctacccc-ctcacgttcagcatgaa |
304 |
Q |
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||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||| |
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| T |
5562623 |
tatggaaaaagtaagtactctgtttcaaggtcagtgtcctactcttgtcccaaaacgagccaatgtcacctctatctacccccctcacgttcagcatgaa |
5562722 |
T |
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| Q |
305 |
aacccgcgaaactgagaacaaaacgctaccgttttattttatctagttttattttccataaagctttggttaatttttagggttcattcatcacattgaa |
404 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||| |
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| T |
5562723 |
aacccgcgaaactgagaacaaaacgctaccgttttattttatctagttttattttccataaagcttcggttaatttttagggttcattcatcacattgaa |
5562822 |
T |
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| Q |
405 |
acggcgcagcagcattgtgaaaactccatggacgacgtaagagcaacctctgcttgggtcgctag |
469 |
Q |
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|||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||| |
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| T |
5562823 |
acggcgcagcagcattgtgaaaactccatggacgacgtaagatcaacctctgcttgggtcgctag |
5562887 |
T |
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