View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF4094_high_9 (Length: 451)
Name: NF4094_high_9
Description: NF4094
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF4094_high_9 |
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Alignment Details
Target: chr5 (Bit Score: 398; Significance: 0; HSPs: 2)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 398; E-Value: 0
Query Start/End: Original strand, 19 - 436
Target Start/End: Original strand, 4370644 - 4371061
Alignment:
| Q |
19 |
aacttgaccataagcacttgaatcatatctctccaaagcattctcaccagcaagttcaccacctgcaatctttgttgccatcttcacttgattcaccaat |
118 |
Q |
| |
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|||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
4370644 |
aacttgaccataagcacttgaatcatatctctccaatgcattctcaccagcaagttcaccacctgcaatctttgttgccatcttcacttgattcaccaat |
4370743 |
T |
|
| Q |
119 |
ccttctggtgaacaattagcatggccaggttgttcattatccttcatttccatgcatgtgaaatttagtataactccatgttttgcaagcatttgtgcta |
218 |
Q |
| |
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||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| | |||||||||||||||||| ||||||||||||| |
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| T |
4370744 |
ccttctggtgaacaattagcatggccaggttgttcattatccttcatttccatgcatgtgaaattcaatataactccatgttttgctagcatttgtgcta |
4370843 |
T |
|
| Q |
219 |
ttggtatataaccatcatgaaaccttgtgttatagtaacctgcagttaattcagttgcatgtgatcttgcattgtaatgccaatgaattccagctatttt |
318 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
4370844 |
ttggtatataaccatcatgaaaccttgtgttatagtaacctgcagttaattcagttgcatgtgatcttgcattgtaatgccaatgaattccagctatttt |
4370943 |
T |
|
| Q |
319 |
ggcagatagtttcactccacttgtttggaatatgcttttagctgatacaagaattttctcaccatgttcaacaagtttgcttgagtaccaatcaaggaag |
418 |
Q |
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||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||| |
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| T |
4370944 |
ggcagatagtttcactccacttgtttggaatatgcttttagctgatacaagaattttctcaccatgttcaacaagcttgcttgagtaccaatcaaggaag |
4371043 |
T |
|
| Q |
419 |
aaatctccatattctgtg |
436 |
Q |
| |
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|||||||||||||||||| |
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|
| T |
4371044 |
aaatctccatattctgtg |
4371061 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #2
Raw Score: 370; E-Value: 0
Query Start/End: Original strand, 19 - 436
Target Start/End: Original strand, 4362841 - 4363258
Alignment:
| Q |
19 |
aacttgaccataagcacttgaatcatatctctccaaagcattctcaccagcaagttcaccacctgcaatctttgttgccatcttcacttgattcaccaat |
118 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||| |||||| |
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|
| T |
4362841 |
aacttgaccataagcacttgaatcatatctctccaaagcattctcaccagcaagttcaccacctgcaatctttgttgccattctcacttgatttaccaat |
4362940 |
T |
|
| Q |
119 |
ccttctggtgaacaattagcatggccaggttgttcattatccttcatttccatgcatgtgaaatttagtataactccatgttttgcaagcatttgtgcta |
218 |
Q |
| |
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||||||||||||||||| |||| | ||||||||||||||||||||||||||||||||||||||| | |||||||||||||||||| ||||||||||||| |
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| T |
4362941 |
ccttctggtgaacaatttgcatcacaaggttgttcattatccttcatttccatgcatgtgaaattcaatataactccatgttttgctagcatttgtgcta |
4363040 |
T |
|
| Q |
219 |
ttggtatataaccatcatgaaaccttgtgttatagtaacctgcagttaattcagttgcatgtgatcttgcattgtaatgccaatgaattccagctatttt |
318 |
Q |
| |
|
||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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|
| T |
4363041 |
ttggtatataaccatcatgaaactttgtgttatagtaacctgcagttaattcagttgcatgtgatcttgcattgtaatgccaatgaattccagctatttt |
4363140 |
T |
|
| Q |
319 |
ggcagatagtttcactccacttgtttggaatatgcttttagctgatacaagaattttctcaccatgttcaacaagtttgcttgagtaccaatcaaggaag |
418 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||| |
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|
| T |
4363141 |
ggcagatagtttcactccacttgtttggaatatgcttttagctgatacaagaattttctcaccatgttcaacaagcttgcttgagtaccaatcaaggaag |
4363240 |
T |
|
| Q |
419 |
aaatctccatattctgtg |
436 |
Q |
| |
|
|||||||||||||||||| |
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|
| T |
4363241 |
aaatctccatattctgtg |
4363258 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4 (Bit Score: 59; Significance: 8e-25; HSPs: 1)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 59; E-Value: 8e-25
Query Start/End: Original strand, 19 - 369
Target Start/End: Complemental strand, 41044212 - 41043862
Alignment:
| Q |
19 |
aacttgaccataagcacttgaatcatatctctccaaagcattctcaccagcaagttcaccacctgcaatctttgttgccatcttcacttgattcaccaat |
118 |
Q |
| |
|
||||||| |||| ||| ||||||||||||||||| ||||| || ||||||||||| | || || ||||||||| |||| ||||| | || || |
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| T |
41044212 |
aacttgagcatatccacctgaatcatatctctccagtgcattttccccagcaagttctatattagccatttttgttgccttcttgacttggtgaactaac |
41044113 |
T |
|
| Q |
119 |
ccttctggtgaacaattagcatggccaggttgttcattatccttcatttccatgcatgtgaaatttagtataactccatgttttgcaagcatttgtgcta |
218 |
Q |
| |
|
|||||||| ||||| |||||||| ||||||||||| | || |||||||||||||| |||||||| | | ||| |||| ||||||| ||||| || | |
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|
| T |
41044112 |
ccttctggcgaacagttagcatgtccaggttgttctctgtctttcatttccatgcaggtgaaattgaagacaacgtcatggtttgcaaacattttggcaa |
41044013 |
T |
|
| Q |
219 |
ttggtatataaccatcatgaaaccttgtgttatagtaacctgcagttaattcagttgcatgtgatcttgcattgtaatgccaatgaattccagctatttt |
318 |
Q |
| |
|
|||| | ||| ||||||| | || |||||||||||||| ||||||| ||||| ||| || || |||| ||||||||||||| ||||| || | ||| |
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|
| T |
41044012 |
ttggaagatacccatcattatgtctagtgttatagtaaccagcagttagttcagctgcgtgcgaccttgatctgtaatgccaatggattcccgcaacttt |
41043913 |
T |
|
| Q |
319 |
ggcagatagtttcactccacttgtttggaatatgcttttagctgatacaag |
369 |
Q |
| |
|
||||||||||||| ||| ||| |||||||| ||| ||||||||||| |
|
|
| T |
41043912 |
accagatagtttcacaccagatgtctggaatatttctttggctgatacaag |
41043862 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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